These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7540#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 934 fasta sequence [GCAGAATCCGCACGAGGCCAACGGCCAAACGACAATTCTCAGTTCCGACGACAGCTCTGATCAGGGATGTTTGGACATTAAAAACGATACGCTCATCAAACACATCGTGCACAAGTACGCACGGAATGGATGCAACGGGGACGAAGGACAATATACAACAACTAAGGCTGGCAAATCGGTACATCAGGACGACCATCATCACGGTCCGGCCTGGGATCGAGGCGTTGCCGATGGAGTCTCCAACCAACCCGACTCTGATTTTGATGAGTTCTCCTCCCAAGACGAAGACGAAGATCGTTGCTCGGTGGCACCGAAACAGATGCTCGAAAACGGTTGCCATCCGGCACTGGCGAACGGGGCGAGCCCAGCGTCCGTTGACCATCCGGACGCTGTTGCCGGCCAGCCGGTCATATTGGGCCGCTGCCGAGCCTTATTTAACTACACACCAAAGCTTTACGACGAGCTGGAGCTGCAGCCGGGCGATATTCTCGAAGTGCACATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCGCGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGGCTGGTGCGGTGTAAATAGCTCGTAGTGTATTGTAAAAGTGAAGGCAGGAAAAGCAGAGGAACGCAATACGCATTATTGATTTTTAACGAAAGGCAGCGGCAGTTATGTGTACCATAGAGAAGGAATAGCTATGTAGTATCATTGGAAAGGGCAANTCTTCCTTCCCGTTAACCTAGGGGAACATTATGGGGTTTTACACAGGGGGCGGGCCAGATCCTGAGNTTAACGCNNGANTCTGGGACGTGGAGGTTACAAAAGTATCCTTATTCGGAAGGTTGCGGTTAACATGGGTCTCCAACANGGGTTTTTTTTAAGGCAAAANGGTTGGTGGGACTTT] [+] EMBL BX467475 [GCAGAATCCGCACGAGGCCAACGGCCAAACGACAATTCTCAGTTCCGACGACAGCTCTGATCAGGGATGTTTGGACATTAAAAACGATACGCTCATCAAACACATCGTGCACAAGTACGCACGGAATGGATGCAACGGGGACGAAGGACAATATACAACAACTAAGGCTGGCAAATCGGTACATCAGGACGACCATCATCACGGTCCGGCCTGGGATCGAGGCGTTGCCGATGGAGTCTCCAACCAACCCGACTCTGATTTTGATGAGTTCTCCTCCCAAGACGAAGACGAAGATCGTTGCTCGGTGGCACCGAAACAGATGCTCGAAAACGGTTGCCATCCGGCACTGGCGAACGGGGCGAGCCCAGCGTCCGTTGACCATCCGGACGCTGTTGCCGGCCAGCCGGTCATATTGGGCCGCTGCCGAGCCTTATTTAACTACACACCAAAGCTTTACGACGAGCTGGAGCTGCAGCCGGGCGATATTCTCGAAGTGCACATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCGCGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGGCTGGTGCGGTGTAAATAGCTCGTAGTGTATTGTAAAAGTGAAGGCAGGAAAAGCAGAGGAACGCAATACGCATTATTGATTTTTAACGAAAGGCAGCGGCAGTTATGTGTACCATAGAGAAGGAATAGCTATGTAGTATCATTGGAAAGGGCAANTCTTCCTTCCCGTTAACCTAGGGGAACATTATGGGGTTTTACACAGGGGGCGGGCCAGATCCTGAGNTTAACGCNNGANTCTGGGACGTGGAGGTTACAAAAGTATCCTTATTCGGAAGGTTGCGGTTAACATGGGTCTCCAACANGGGTTTTTTTTAAGGCAAAANGGTTGGTGGGACTTT] consensusID : consensus_7540#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 908 fasta sequence [CCGCCCACGCGTCCGCATCAAACACATCGTGCACAAGTACGCACGGAATGGATGCAACGGGGACGAAGGACAATATACAACAACTAAGGCTGGCAAATCGGTACATCAGGACGATCATCATCACGGTCCGGCCTGGGATCGAGGCGTTGCCGATGGAGTCTCCAACCAACCCGACTCCGATTTTGATGAGTTCTCCTCCCAAGACGAAGACGAAGATCGTTGCTCGGTGGCACCGAAACAGATGCTCGAAAACGGTTGCCATCCGGCACTGGCGAACGGGGCGAGCCCAGCGTCCGTTGACCATCCGGACGCTGTTGCCGGCCAGCCGGTCATATTGGGCCGCTGCCGAGCCTTATTTAACTACACACCAAAGCTTTACGACGAGCTGGAGCTGCAGCCGGGCGATATTCTCGAAGTGCACATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCGCGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGGCTGGTGCGGTGTAAATAGCTCGTGTTGTATTTGTAAAAGTGAAGCAGGAAAGCAGAGAACGCAATACGCATTATTGATTTTAACGAAGGCAGCGCAGTATGTGTACCATAGAGAAAGAATAGCTAATGTAGTATCATTGAAAGCAATCTCTCCTACTAGGAATATGGTTTAAAGGCGCAATCTAGTAACAGACTGGAGTGAGTAAA-ATATCTATCGAAGTGCGTGAATGGATCAAATGTATA-TAAGCGAAGGTTGTGGATAGAATGTTACGAGATATGACGAAACGCAAAGAAAACTATCAAACGCACACAGTTTCGCGAAGTACACGATAGGATGTTGAGAGGAAGTGAATAAAGTGAGTAAAAGATTTATATTTCCCAACAACACAC] [+] EMBL BM609454 [CCGCCCACGCGTCCGCATCAAACACATCGTGCACAAGTACGCACGGAATGGATGCAACGGGGACGAAGGACAATATACAACAACTAAGGCTGGCAAATCGGTACATCAGGACGATCATCATCACGGTCCGGCCTGGGATCGAGGCGTTGCCGATGGAGTCTCCAACCAACCCGACTCCGATTTTGATGAGTTCTCCTCCCAAGACGAAGACGAAGATCGTTGCTCGGTGGCACCGAAACAGATGCTCGAAAACGGTTGCCATCCGGCACTGGCGAACGGGGCGAGCCCAGCGTCCGTTGACCATCCGGACGCTGTTGCCGGCCAGCCGGTCATATTGGGCCGCTGCCGAGCCTTATTTAACTACACACCAAAGCTTTACGACGAGCTGGAGCTGCAGCCGGGCGATATTCTCGAAGTGCACATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCGCGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGGCTGGTGCGGTGTAAATAGCTCGTGTTGTATTTGTAAAAGTGAAGCAGGAAAGCAGAGAACGCAATACGCATTATTGATTTTAACGAAGGCAGCGCAGTATGTGTACCATAGAGAAAGAATAGCTAATGTAGTACTATCGAAAGCAATCTCTCCTACTAGGAATATGGTTTGAGGGCGCAACCTGGTAACAGACT ] [+] EMBL BX614937 [ GCAAATCGGTACATCAGGACGACCATCATCACGGTCCGGCCTGGGATCGAGGCGTTGCCGATGGAGTCTCCAACCAACCCGACTCTGATTTTGATGAGTTCTCCTCCCAAGACGAAGACGAAGATCGTTGCTCGGTGGCACCGAAACAGATGCTCGAAAACGGTTGCCATCCGGCACTGGCGAACTGGGCGAGCCCAGCGTCCGTTGACCATCCGGACGCTGTTGCCGGCCAGCCGGTCATATTGGGCCGCTGCCGAGCCTTATTTAACTACACACCAAAGCTTTACGACGAGCTGGAGCTGCAGCCGGGCGATATTCTCGAAGTGCACATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCGCGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGGCTGGTGCGGTGTAAATAGCTCGTGTTGTATTTGTAAAAGTGAAGCAGGAAAGCAGAGAACGCAATACGCATTATTGATTTTAACGAAGGCAGCGCAGTATGTGTACCATAGAGAAAGAATAGCTAATGTAGTATCATTGAAAGCAATCTCTCCTACTAGGAATATGGTTTAAAGGCGCAATCTAGTAACAGACTGGAGTGAGTAAA ATATCTATCGAAGTGCGTGAATGGATCAAATGTATA TAAGCGAAGGTTGTGGATAGAATGTTACGAGA ] [+] EMBL BM640419 [ CCGATTTTGATGAGTTCTCCTCCCAAGACGAAGACGAAGATCGTTGCTCGGTGGCACCGAAACAGATGCTCGAAAACGGTTGCCATCCGGCACTGGCGAACGGGGCGAGCCCAGCGTCCGTTGACCATCCGGACGCTGTTGCCGGCCAGCCGGTCATATTGGGCCGCTGCCGAGCCTTATTTAACTACACACCAAAGCTTTACGATGAGCTGGAGCTGCAGCCGGGCGATATTCTCGAAGTGCACATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCGCGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGGCTGGTGCGGTGTAAATAGCTCGTGTTGTATTTGTAAAAGTGAAGCAGGAAAGCAGAGAACGCAATACGCATTATTGATTTTAACGAAGGCAGCGCAGTATGTGTACCATAGAGAAAGAATAGCTAATGTAGTACTATCGAAAGCAATCTCTCCTACTAGGAATATGGTTTAAGGGCGCAACCTGGTAACAGACTGGAGTGAGTAAATAT TCTATCGAAGTGCGTGAATGGATCGAATGTACACTAAGCGCAGGTTGTGGATAGAATGTT ] [+] EMBL BX621964 [ AGATGCTCGAAAACGGTTGCCATCCGGCACTGGCGAACGGGGCGAGCCCAGCGTCCGTTGACCATCCGGACGCTGTTGCCGGCCAGCCGGTCATATTGGGCCGCTGCCGAGCCTTATTTAACTACACACCAAAGCTTTACGACGAGCTGGAGCTGCAGCCGGGCGATATTCTCGAAGTGCACATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCGCGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGGCTGGTGCGGTGTAAATAGCTCGTGTTGTATTTGTAAAAGTGAAGCAGGAAAGCAGAGAACGCAATACGCATTATTGATTTTAACGAAGGCAGCGCAGTATGTGTACCATAGAGAAAGAATAGCTAATGTAGTATCATTGAAAGCAATCTCTCCTACTAGGAATATGGTTTAAAGGCGCAATCTAGTAACAGACTGGAGTGAGTAAA ATATCTATCGAAGTGCGTGAATGGATCAAATGTATA TAAGCGAAGGTTGTGGATAGAATGTTACGAGATATGACGAAACGCAAAGAAAACTATCAAACGCACACAGTTTCGCGAAGTACACGATAGGATGTTGAGAGGAAGTGAATAAAGTGAGTAAAAGA ] [+] EMBL BM619236 [ ccgATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCGCGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGGCTGGTGCGGTGTAAATAGCTCGTGTTGTATTTGTAAAAGTGAAGCAGGAAAGCAGAGAACGCAATACGCATTATTGATTTTAACGAAGGCAGCGCAGTATGTGTACCATAGAGAAAGAATAGCTAATGTAGTATCATTGAAAGCAATCTCTCCTACTAGGAATATGGTTTAAAGGCGCAATCTAGTAACAGACTGGAGTGAGTAAA ATATCTATCGAAGTGCGTGAATGGATCGAATGTATA TAAGCGAAGGTTGTGGATAGAATGTTACGAGATATGACGAAACGCAAAGAAAACTATCAAACGCACACGGTTTCGCGAAGTACACGATAGGATGTTGAGAGGAAGTGAATAAAGTGAGTAAAAGATTTATATTTCCCAACAACACAC] consensusID : consensus_7540#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence [GCAAGAATCCGCACGATGGTTCCGACGACAGCTCTGATCACCGCGATGTTTGGACATTAAAAACGATACGCTCATCAAACACATCGTGCACAAGTACGCACGGAATGGATGCAACGGGGACGAAGGACAATATACAACAACTAAGGCTGGCAAATCGGTACATCAGGACGACCATCATCACGGTCCGGCCTGGGATCGAGGCGTTGCCGATGGAGTCTCCAACCAACCCGACTCTGATTTTGATGAGTTCTCCTCCCAAGACGAAGACGAAGATCGTTGCTCGGTGGCACCGAAACAGATGCTCGAAAACGGTTGCCATCCGGCACTGGCGAACGGGGCGAGCCCAGCGTCCGTTGACCATCCGGACGCTGTTGCCGGCCAGCCGGTCATATTGGGCCGCTGCCGAGCCTTATTTAACTACACACNCAAAGCTTTACGACGAGCTGGAGCTGCAGCCGGGCGATATTCTCGAAGTGCACATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCGCGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGGCTGGTGCGGGTGTANAATAGCTCGTGTTGTATTTGTAAAAGTGAAGCCAGGAAAAGCAGAGAACGCAATACGGCATTATTGGACTTTTAACGAAAGGCCGAGCNGCAGTA] [+] EMBL BX467974 [GCAAGAATCCGCACGATGGTTCCGACGACAGCTCTGATCACCGCGATGTTTGGACATTAAAAACGATACGCTCATCAAACACATCGTGCACAAGTACGCACGGAATGGATGCAACGGGGACGAAGGACAATATACAACAACTAAGGCTGGCAAATCGGTACATCAGGACGACCATCATCACGGTCCGGCCTGGGATCGAGGCGTTGCCGATGGAGTCTCCAACCAACCCGACTCTGATTTTGATGAGTTCTCCTCCCAAGACGAAGACGAAGATCGTTGCTCGGTGGCACCGAAACAGATGCTCGAAAACGGTTGCCATCCGGCACTGGCGAACGGGGCGAGCCCAGCGTCCGTTGACCATCCGGACGCTGTTGCCGGCCAGCCGGTCATATTGGGCCGCTGCCGAGCCTTATTTAACTACACACNCAAAGCTTTACGACGAGCTGGAGCTGCAGCCGGGCGATATTCTCGAAGTGCACATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCGCGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGGCTGGTGCGGGTGTANAATAGCTCGTGTTGTATTTGTAAAAGTGAAGCCAGGAAAAGCAGAGAACGCAATACGGCATTATTGGACTTTTAACGAAAGGCCGAGCNGCAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7540#0 GCAGAATCCGCACGAGGCCAACGGCCAAACGACAATTCTCAGTTCCGACGACAGCTCTGA 60 consensus_7540#2 -----------------------GCAAGAATCCGCACGATGGTTCCGACGACAGCTCTGA 37 consensus_7540#1 ------------------------------------------------------------ consensus_7540#0 TCA--GGGATGTTTGGACATTAAAAACGATACGCTCATCAAACACATCGTGCACAAGTAC 118 consensus_7540#2 TCACCGCGATGTTTGGACATTAAAAACGATACGCTCATCAAACACATCGTGCACAAGTAC 97 consensus_7540#1 -------------------CCGCCCACG-CGTCCGCATCAAACACATCGTGCACAAGTAC 40 *** * ************************* consensus_7540#0 GCACGGAATGGATGCAACGGGGACGAAGGACAATATACAACAACTAAGGCTGGCAAATCG 178 consensus_7540#2 GCACGGAATGGATGCAACGGGGACGAAGGACAATATACAACAACTAAGGCTGGCAAATCG 157 consensus_7540#1 GCACGGAATGGATGCAACGGGGACGAAGGACAATATACAACAACTAAGGCTGGCAAATCG 100 ************************************************************ consensus_7540#0 GTACATCAGGACGACCATCATCACGGTCCGGCCTGGGATCGAGGCGTTGCCGATGGAGTC 238 consensus_7540#2 GTACATCAGGACGACCATCATCACGGTCCGGCCTGGGATCGAGGCGTTGCCGATGGAGTC 217 consensus_7540#1 GTACATCAGGACGATCATCATCACGGTCCGGCCTGGGATCGAGGCGTTGCCGATGGAGTC 160 ************** ********************************************* consensus_7540#0 TCCAACCAACCCGACTCTGATTTTGATGAGTTCTCCTCCCAAGACGAAGACGAAGATCGT 298 consensus_7540#2 TCCAACCAACCCGACTCTGATTTTGATGAGTTCTCCTCCCAAGACGAAGACGAAGATCGT 277 consensus_7540#1 TCCAACCAACCCGACTCCGATTTTGATGAGTTCTCCTCCCAAGACGAAGACGAAGATCGT 220 ***************** ****************************************** consensus_7540#0 TGCTCGGTGGCACCGAAACAGATGCTCGAAAACGGTTGCCATCCGGCACTGGCGAACGGG 358 consensus_7540#2 TGCTCGGTGGCACCGAAACAGATGCTCGAAAACGGTTGCCATCCGGCACTGGCGAACGGG 337 consensus_7540#1 TGCTCGGTGGCACCGAAACAGATGCTCGAAAACGGTTGCCATCCGGCACTGGCGAACGGG 280 ************************************************************ consensus_7540#0 GCGAGCCCAGCGTCCGTTGACCATCCGGACGCTGTTGCCGGCCAGCCGGTCATATTGGGC 418 consensus_7540#2 GCGAGCCCAGCGTCCGTTGACCATCCGGACGCTGTTGCCGGCCAGCCGGTCATATTGGGC 397 consensus_7540#1 GCGAGCCCAGCGTCCGTTGACCATCCGGACGCTGTTGCCGGCCAGCCGGTCATATTGGGC 340 ************************************************************ consensus_7540#0 CGCTGCCGAGCCTTATTTAACTACACACC-AAAGCTTTACGACGAGCTGGAGCTGCAGCC 477 consensus_7540#2 CGCTGCCGAGCCTTATTTAACTACACACNCAAAGCTTTACGACGAGCTGGAGCTGCAGCC 457 consensus_7540#1 CGCTGCCGAGCCTTATTTAACTACACACC-AAAGCTTTACGACGAGCTGGAGCTGCAGCC 399 **************************** ****************************** consensus_7540#0 GGGCGATATTCTCGAAGTGCACATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCG 537 consensus_7540#2 GGGCGATATTCTCGAAGTGCACATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCG 517 consensus_7540#1 GGGCGATATTCTCGAAGTGCACATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCG 459 ************************************************************ consensus_7540#0 CGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGG 597 consensus_7540#2 CGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGG 577 consensus_7540#1 CGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGG 519 ************************************************************ consensus_7540#0 CTGGTGCGG-TGTAAA-TAGCTCGTAGTGTATT-GTAAAAGTGAAGGCAGGAAAAGCAGA 654 consensus_7540#2 CTGGTGCGGGTGTANAATAGCTCGTGTTGTATTTGTAAAAGTGAAGCCAGGAAAAGCAGA 637 consensus_7540#1 CTGGTGCGG-TGTAAA-TAGCTCGTGTTGTATTTGTAAAAGTGAAG-CAGGAAA-GCAGA 575 ********* **** * ******** ****** ************ ******* ***** consensus_7540#0 GGAACGCAATACG-CATTATTG-ATTTTTAACGAAAGGC--AGCGGCAGTTATGTGTACC 710 consensus_7540#2 G-AACGCAATACGGCATTATTGGACTTTTAACGAAAGGCCGAGCNGCAGTA--------- 687 consensus_7540#1 G-AACGCAATACG-CATTATTG--ATTTTAACGAAGGC---AGCG-CAGT-ATGTGTACC 626 * *********** ******** ********** * *** **** consensus_7540#0 ATAGAGAAGGAATAGCTA-TGTAGTATCATTGGAAAGGGCAANTCTTCCTTCCCGT-TAA 768 consensus_7540#2 ------------------------------------------------------------ consensus_7540#1 ATAGAGAAAGAATAGCTAATGTAGTATCATTGAAAGCAATCTCTCCTACTAGGAATATGG 686 consensus_7540#0 CCTAGGGGAACATTATGGGGTTTTAC-ACAGGGGGCGGGCCAGATCCTGAGNTTAACGCN 827 consensus_7540#2 ------------------------------------------------------------ consensus_7540#1 TTTAAAGGCGCAATCTAGTAACAGACTGGAGTGAGTAAAATATCTATCGAAGTGCGTGAA 746 consensus_7540#0 NGANTCTGGGACGT------GGAGGTTACAAAAGTATCCTTATTCGGAAGGTTGCGGTTA 881 consensus_7540#2 ------------------------------------------------------------ consensus_7540#1 TGGATCAAATGTATATAAGCGAAGGTTGTGGATAGAATGTTA--CGAGATATGACGAAAC 804 consensus_7540#0 ACATGGGTCTCCAACANGGGTTTTTTTTAAGGCAAAANGGTTGGTGGGACTTT------- 934 consensus_7540#2 ------------------------------------------------------------ consensus_7540#1 GCAAAGAAAACTATCAAACGCACACAGTTTCGCGAAGTACACGATAGGATGTTGAGAGGA 864 consensus_7540#0 -------------------------------------------- consensus_7540#2 -------------------------------------------- consensus_7540#1 AGTGAATAAAGTGAGTAAAAGATTTATATTTCCCAACAACACAC 908 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||