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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7540#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 934 fasta sequence
[GCAGAATCCGCACGAGGCCAACGGCCAAACGACAATTCTCAGTTCCGACGACAGCTCTGATCAGGGATGTTTGGACATTAAAAACGATACGCTCATCAAACACATCGTGCACAAGTACGCACGGAATGGATGCAACGGGGACGAAGGACAATATACAACAACTAAGGCTGGCAAATCGGTACATCAGGACGACCATCATCACGGTCCGGCCTGGGATCGAGGCGTTGCCGATGGAGTCTCCAACCAACCCGACTCTGATTTTGATGAGTTCTCCTCCCAAGACGAAGACGAAGATCGTTGCTCGGTGGCACCGAAACAGATGCTCGAAAACGGTTGCCATCCGGCACTGGCGAACGGGGCGAGCCCAGCGTCCGTTGACCATCCGGACGCTGTTGCCGGCCAGCCGGTCATATTGGGCCGCTGCCGAGCCTTATTTAACTACACACCAAAGCTTTACGACGAGCTGGAGCTGCAGCCGGGCGATATTCTCGAAGTGCACATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCGCGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGGCTGGTGCGGTGTAAATAGCTCGTAGTGTATTGTAAAAGTGAAGGCAGGAAAAGCAGAGGAACGCAATACGCATTATTGATTTTTAACGAAAGGCAGCGGCAGTTATGTGTACCATAGAGAAGGAATAGCTATGTAGTATCATTGGAAAGGGCAANTCTTCCTTCCCGTTAACCTAGGGGAACATTATGGGGTTTTACACAGGGGGCGGGCCAGATCCTGAGNTTAACGCNNGANTCTGGGACGTGGAGGTTACAAAAGTATCCTTATTCGGAAGGTTGCGGTTAACATGGGTCTCCAACANGGGTTTTTTTTAAGGCAAAANGGTTGGTGGGACTTT]
[+] EMBL BX467475 [GCAGAATCCGCACGAGGCCAACGGCCAAACGACAATTCTCAGTTCCGACGACAGCTCTGATCAGGGATGTTTGGACATTAAAAACGATACGCTCATCAAACACATCGTGCACAAGTACGCACGGAATGGATGCAACGGGGACGAAGGACAATATACAACAACTAAGGCTGGCAAATCGGTACATCAGGACGACCATCATCACGGTCCGGCCTGGGATCGAGGCGTTGCCGATGGAGTCTCCAACCAACCCGACTCTGATTTTGATGAGTTCTCCTCCCAAGACGAAGACGAAGATCGTTGCTCGGTGGCACCGAAACAGATGCTCGAAAACGGTTGCCATCCGGCACTGGCGAACGGGGCGAGCCCAGCGTCCGTTGACCATCCGGACGCTGTTGCCGGCCAGCCGGTCATATTGGGCCGCTGCCGAGCCTTATTTAACTACACACCAAAGCTTTACGACGAGCTGGAGCTGCAGCCGGGCGATATTCTCGAAGTGCACATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCGCGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGGCTGGTGCGGTGTAAATAGCTCGTAGTGTATTGTAAAAGTGAAGGCAGGAAAAGCAGAGGAACGCAATACGCATTATTGATTTTTAACGAAAGGCAGCGGCAGTTATGTGTACCATAGAGAAGGAATAGCTATGTAGTATCATTGGAAAGGGCAANTCTTCCTTCCCGTTAACCTAGGGGAACATTATGGGGTTTTACACAGGGGGCGGGCCAGATCCTGAGNTTAACGCNNGANTCTGGGACGTGGAGGTTACAAAAGTATCCTTATTCGGAAGGTTGCGGTTAACATGGGTCTCCAACANGGGTTTTTTTTAAGGCAAAANGGTTGGTGGGACTTT]
consensusID : consensus_7540#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 908 fasta sequence
[CCGCCCACGCGTCCGCATCAAACACATCGTGCACAAGTACGCACGGAATGGATGCAACGGGGACGAAGGACAATATACAACAACTAAGGCTGGCAAATCGGTACATCAGGACGATCATCATCACGGTCCGGCCTGGGATCGAGGCGTTGCCGATGGAGTCTCCAACCAACCCGACTCCGATTTTGATGAGTTCTCCTCCCAAGACGAAGACGAAGATCGTTGCTCGGTGGCACCGAAACAGATGCTCGAAAACGGTTGCCATCCGGCACTGGCGAACGGGGCGAGCCCAGCGTCCGTTGACCATCCGGACGCTGTTGCCGGCCAGCCGGTCATATTGGGCCGCTGCCGAGCCTTATTTAACTACACACCAAAGCTTTACGACGAGCTGGAGCTGCAGCCGGGCGATATTCTCGAAGTGCACATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCGCGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGGCTGGTGCGGTGTAAATAGCTCGTGTTGTATTTGTAAAAGTGAAGCAGGAAAGCAGAGAACGCAATACGCATTATTGATTTTAACGAAGGCAGCGCAGTATGTGTACCATAGAGAAAGAATAGCTAATGTAGTATCATTGAAAGCAATCTCTCCTACTAGGAATATGGTTTAAAGGCGCAATCTAGTAACAGACTGGAGTGAGTAAA-ATATCTATCGAAGTGCGTGAATGGATCAAATGTATA-TAAGCGAAGGTTGTGGATAGAATGTTACGAGATATGACGAAACGCAAAGAAAACTATCAAACGCACACAGTTTCGCGAAGTACACGATAGGATGTTGAGAGGAAGTGAATAAAGTGAGTAAAAGATTTATATTTCCCAACAACACAC]
[+] EMBL BM609454 [CCGCCCACGCGTCCGCATCAAACACATCGTGCACAAGTACGCACGGAATGGATGCAACGGGGACGAAGGACAATATACAACAACTAAGGCTGGCAAATCGGTACATCAGGACGATCATCATCACGGTCCGGCCTGGGATCGAGGCGTTGCCGATGGAGTCTCCAACCAACCCGACTCCGATTTTGATGAGTTCTCCTCCCAAGACGAAGACGAAGATCGTTGCTCGGTGGCACCGAAACAGATGCTCGAAAACGGTTGCCATCCGGCACTGGCGAACGGGGCGAGCCCAGCGTCCGTTGACCATCCGGACGCTGTTGCCGGCCAGCCGGTCATATTGGGCCGCTGCCGAGCCTTATTTAACTACACACCAAAGCTTTACGACGAGCTGGAGCTGCAGCCGGGCGATATTCTCGAAGTGCACATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCGCGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGGCTGGTGCGGTGTAAATAGCTCGTGTTGTATTTGTAAAAGTGAAGCAGGAAAGCAGAGAACGCAATACGCATTATTGATTTTAACGAAGGCAGCGCAGTATGTGTACCATAGAGAAAGAATAGCTAATGTAGTACTATCGAAAGCAATCTCTCCTACTAGGAATATGGTTTGAGGGCGCAACCTGGTAACAGACT ]
[+] EMBL BX614937 [ GCAAATCGGTACATCAGGACGACCATCATCACGGTCCGGCCTGGGATCGAGGCGTTGCCGATGGAGTCTCCAACCAACCCGACTCTGATTTTGATGAGTTCTCCTCCCAAGACGAAGACGAAGATCGTTGCTCGGTGGCACCGAAACAGATGCTCGAAAACGGTTGCCATCCGGCACTGGCGAACTGGGCGAGCCCAGCGTCCGTTGACCATCCGGACGCTGTTGCCGGCCAGCCGGTCATATTGGGCCGCTGCCGAGCCTTATTTAACTACACACCAAAGCTTTACGACGAGCTGGAGCTGCAGCCGGGCGATATTCTCGAAGTGCACATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCGCGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGGCTGGTGCGGTGTAAATAGCTCGTGTTGTATTTGTAAAAGTGAAGCAGGAAAGCAGAGAACGCAATACGCATTATTGATTTTAACGAAGGCAGCGCAGTATGTGTACCATAGAGAAAGAATAGCTAATGTAGTATCATTGAAAGCAATCTCTCCTACTAGGAATATGGTTTAAAGGCGCAATCTAGTAACAGACTGGAGTGAGTAAA ATATCTATCGAAGTGCGTGAATGGATCAAATGTATA TAAGCGAAGGTTGTGGATAGAATGTTACGAGA ]
[+] EMBL BM640419 [ CCGATTTTGATGAGTTCTCCTCCCAAGACGAAGACGAAGATCGTTGCTCGGTGGCACCGAAACAGATGCTCGAAAACGGTTGCCATCCGGCACTGGCGAACGGGGCGAGCCCAGCGTCCGTTGACCATCCGGACGCTGTTGCCGGCCAGCCGGTCATATTGGGCCGCTGCCGAGCCTTATTTAACTACACACCAAAGCTTTACGATGAGCTGGAGCTGCAGCCGGGCGATATTCTCGAAGTGCACATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCGCGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGGCTGGTGCGGTGTAAATAGCTCGTGTTGTATTTGTAAAAGTGAAGCAGGAAAGCAGAGAACGCAATACGCATTATTGATTTTAACGAAGGCAGCGCAGTATGTGTACCATAGAGAAAGAATAGCTAATGTAGTACTATCGAAAGCAATCTCTCCTACTAGGAATATGGTTTAAGGGCGCAACCTGGTAACAGACTGGAGTGAGTAAATAT TCTATCGAAGTGCGTGAATGGATCGAATGTACACTAAGCGCAGGTTGTGGATAGAATGTT ]
[+] EMBL BX621964 [ AGATGCTCGAAAACGGTTGCCATCCGGCACTGGCGAACGGGGCGAGCCCAGCGTCCGTTGACCATCCGGACGCTGTTGCCGGCCAGCCGGTCATATTGGGCCGCTGCCGAGCCTTATTTAACTACACACCAAAGCTTTACGACGAGCTGGAGCTGCAGCCGGGCGATATTCTCGAAGTGCACATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCGCGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGGCTGGTGCGGTGTAAATAGCTCGTGTTGTATTTGTAAAAGTGAAGCAGGAAAGCAGAGAACGCAATACGCATTATTGATTTTAACGAAGGCAGCGCAGTATGTGTACCATAGAGAAAGAATAGCTAATGTAGTATCATTGAAAGCAATCTCTCCTACTAGGAATATGGTTTAAAGGCGCAATCTAGTAACAGACTGGAGTGAGTAAA ATATCTATCGAAGTGCGTGAATGGATCAAATGTATA TAAGCGAAGGTTGTGGATAGAATGTTACGAGATATGACGAAACGCAAAGAAAACTATCAAACGCACACAGTTTCGCGAAGTACACGATAGGATGTTGAGAGGAAGTGAATAAAGTGAGTAAAAGA ]
[+] EMBL BM619236 [ ccgATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCGCGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGGCTGGTGCGGTGTAAATAGCTCGTGTTGTATTTGTAAAAGTGAAGCAGGAAAGCAGAGAACGCAATACGCATTATTGATTTTAACGAAGGCAGCGCAGTATGTGTACCATAGAGAAAGAATAGCTAATGTAGTATCATTGAAAGCAATCTCTCCTACTAGGAATATGGTTTAAAGGCGCAATCTAGTAACAGACTGGAGTGAGTAAA ATATCTATCGAAGTGCGTGAATGGATCGAATGTATA TAAGCGAAGGTTGTGGATAGAATGTTACGAGATATGACGAAACGCAAAGAAAACTATCAAACGCACACGGTTTCGCGAAGTACACGATAGGATGTTGAGAGGAAGTGAATAAAGTGAGTAAAAGATTTATATTTCCCAACAACACAC]
consensusID : consensus_7540#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence
[GCAAGAATCCGCACGATGGTTCCGACGACAGCTCTGATCACCGCGATGTTTGGACATTAAAAACGATACGCTCATCAAACACATCGTGCACAAGTACGCACGGAATGGATGCAACGGGGACGAAGGACAATATACAACAACTAAGGCTGGCAAATCGGTACATCAGGACGACCATCATCACGGTCCGGCCTGGGATCGAGGCGTTGCCGATGGAGTCTCCAACCAACCCGACTCTGATTTTGATGAGTTCTCCTCCCAAGACGAAGACGAAGATCGTTGCTCGGTGGCACCGAAACAGATGCTCGAAAACGGTTGCCATCCGGCACTGGCGAACGGGGCGAGCCCAGCGTCCGTTGACCATCCGGACGCTGTTGCCGGCCAGCCGGTCATATTGGGCCGCTGCCGAGCCTTATTTAACTACACACNCAAAGCTTTACGACGAGCTGGAGCTGCAGCCGGGCGATATTCTCGAAGTGCACATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCGCGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGGCTGGTGCGGGTGTANAATAGCTCGTGTTGTATTTGTAAAAGTGAAGCCAGGAAAAGCAGAGAACGCAATACGGCATTATTGGACTTTTAACGAAAGGCCGAGCNGCAGTA]
[+] EMBL BX467974 [GCAAGAATCCGCACGATGGTTCCGACGACAGCTCTGATCACCGCGATGTTTGGACATTAAAAACGATACGCTCATCAAACACATCGTGCACAAGTACGCACGGAATGGATGCAACGGGGACGAAGGACAATATACAACAACTAAGGCTGGCAAATCGGTACATCAGGACGACCATCATCACGGTCCGGCCTGGGATCGAGGCGTTGCCGATGGAGTCTCCAACCAACCCGACTCTGATTTTGATGAGTTCTCCTCCCAAGACGAAGACGAAGATCGTTGCTCGGTGGCACCGAAACAGATGCTCGAAAACGGTTGCCATCCGGCACTGGCGAACGGGGCGAGCCCAGCGTCCGTTGACCATCCGGACGCTGTTGCCGGCCAGCCGGTCATATTGGGCCGCTGCCGAGCCTTATTTAACTACACACNCAAAGCTTTACGACGAGCTGGAGCTGCAGCCGGGCGATATTCTCGAAGTGCACATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCGCGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGGCTGGTGCGGGTGTANAATAGCTCGTGTTGTATTTGTAAAAGTGAAGCCAGGAAAAGCAGAGAACGCAATACGGCATTATTGGACTTTTAACGAAAGGCCGAGCNGCAGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7540#0 GCAGAATCCGCACGAGGCCAACGGCCAAACGACAATTCTCAGTTCCGACGACAGCTCTGA 60
consensus_7540#2 -----------------------GCAAGAATCCGCACGATGGTTCCGACGACAGCTCTGA 37
consensus_7540#1 ------------------------------------------------------------
consensus_7540#0 TCA--GGGATGTTTGGACATTAAAAACGATACGCTCATCAAACACATCGTGCACAAGTAC 118
consensus_7540#2 TCACCGCGATGTTTGGACATTAAAAACGATACGCTCATCAAACACATCGTGCACAAGTAC 97
consensus_7540#1 -------------------CCGCCCACG-CGTCCGCATCAAACACATCGTGCACAAGTAC 40
*** * *************************
consensus_7540#0 GCACGGAATGGATGCAACGGGGACGAAGGACAATATACAACAACTAAGGCTGGCAAATCG 178
consensus_7540#2 GCACGGAATGGATGCAACGGGGACGAAGGACAATATACAACAACTAAGGCTGGCAAATCG 157
consensus_7540#1 GCACGGAATGGATGCAACGGGGACGAAGGACAATATACAACAACTAAGGCTGGCAAATCG 100
************************************************************
consensus_7540#0 GTACATCAGGACGACCATCATCACGGTCCGGCCTGGGATCGAGGCGTTGCCGATGGAGTC 238
consensus_7540#2 GTACATCAGGACGACCATCATCACGGTCCGGCCTGGGATCGAGGCGTTGCCGATGGAGTC 217
consensus_7540#1 GTACATCAGGACGATCATCATCACGGTCCGGCCTGGGATCGAGGCGTTGCCGATGGAGTC 160
************** *********************************************
consensus_7540#0 TCCAACCAACCCGACTCTGATTTTGATGAGTTCTCCTCCCAAGACGAAGACGAAGATCGT 298
consensus_7540#2 TCCAACCAACCCGACTCTGATTTTGATGAGTTCTCCTCCCAAGACGAAGACGAAGATCGT 277
consensus_7540#1 TCCAACCAACCCGACTCCGATTTTGATGAGTTCTCCTCCCAAGACGAAGACGAAGATCGT 220
***************** ******************************************
consensus_7540#0 TGCTCGGTGGCACCGAAACAGATGCTCGAAAACGGTTGCCATCCGGCACTGGCGAACGGG 358
consensus_7540#2 TGCTCGGTGGCACCGAAACAGATGCTCGAAAACGGTTGCCATCCGGCACTGGCGAACGGG 337
consensus_7540#1 TGCTCGGTGGCACCGAAACAGATGCTCGAAAACGGTTGCCATCCGGCACTGGCGAACGGG 280
************************************************************
consensus_7540#0 GCGAGCCCAGCGTCCGTTGACCATCCGGACGCTGTTGCCGGCCAGCCGGTCATATTGGGC 418
consensus_7540#2 GCGAGCCCAGCGTCCGTTGACCATCCGGACGCTGTTGCCGGCCAGCCGGTCATATTGGGC 397
consensus_7540#1 GCGAGCCCAGCGTCCGTTGACCATCCGGACGCTGTTGCCGGCCAGCCGGTCATATTGGGC 340
************************************************************
consensus_7540#0 CGCTGCCGAGCCTTATTTAACTACACACC-AAAGCTTTACGACGAGCTGGAGCTGCAGCC 477
consensus_7540#2 CGCTGCCGAGCCTTATTTAACTACACACNCAAAGCTTTACGACGAGCTGGAGCTGCAGCC 457
consensus_7540#1 CGCTGCCGAGCCTTATTTAACTACACACC-AAAGCTTTACGACGAGCTGGAGCTGCAGCC 399
**************************** ******************************
consensus_7540#0 GGGCGATATTCTCGAAGTGCACATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCG 537
consensus_7540#2 GGGCGATATTCTCGAAGTGCACATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCG 517
consensus_7540#1 GGGCGATATTCTCGAAGTGCACATCAAGCAGGAGGACGGCTGGTGGCTCGGAGCGCTTCG 459
************************************************************
consensus_7540#0 CGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGG 597
consensus_7540#2 CGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGG 577
consensus_7540#1 CGGCCAGATTGGCATCTTTCCGGCAACGTACGTGGAGGAGATACCGTAGCGACATGCAGG 519
************************************************************
consensus_7540#0 CTGGTGCGG-TGTAAA-TAGCTCGTAGTGTATT-GTAAAAGTGAAGGCAGGAAAAGCAGA 654
consensus_7540#2 CTGGTGCGGGTGTANAATAGCTCGTGTTGTATTTGTAAAAGTGAAGCCAGGAAAAGCAGA 637
consensus_7540#1 CTGGTGCGG-TGTAAA-TAGCTCGTGTTGTATTTGTAAAAGTGAAG-CAGGAAA-GCAGA 575
********* **** * ******** ****** ************ ******* *****
consensus_7540#0 GGAACGCAATACG-CATTATTG-ATTTTTAACGAAAGGC--AGCGGCAGTTATGTGTACC 710
consensus_7540#2 G-AACGCAATACGGCATTATTGGACTTTTAACGAAAGGCCGAGCNGCAGTA--------- 687
consensus_7540#1 G-AACGCAATACG-CATTATTG--ATTTTAACGAAGGC---AGCG-CAGT-ATGTGTACC 626
* *********** ******** ********** * *** ****
consensus_7540#0 ATAGAGAAGGAATAGCTA-TGTAGTATCATTGGAAAGGGCAANTCTTCCTTCCCGT-TAA 768
consensus_7540#2 ------------------------------------------------------------
consensus_7540#1 ATAGAGAAAGAATAGCTAATGTAGTATCATTGAAAGCAATCTCTCCTACTAGGAATATGG 686
consensus_7540#0 CCTAGGGGAACATTATGGGGTTTTAC-ACAGGGGGCGGGCCAGATCCTGAGNTTAACGCN 827
consensus_7540#2 ------------------------------------------------------------
consensus_7540#1 TTTAAAGGCGCAATCTAGTAACAGACTGGAGTGAGTAAAATATCTATCGAAGTGCGTGAA 746
consensus_7540#0 NGANTCTGGGACGT------GGAGGTTACAAAAGTATCCTTATTCGGAAGGTTGCGGTTA 881
consensus_7540#2 ------------------------------------------------------------
consensus_7540#1 TGGATCAAATGTATATAAGCGAAGGTTGTGGATAGAATGTTA--CGAGATATGACGAAAC 804
consensus_7540#0 ACATGGGTCTCCAACANGGGTTTTTTTTAAGGCAAAANGGTTGGTGGGACTTT------- 934
consensus_7540#2 ------------------------------------------------------------
consensus_7540#1 GCAAAGAAAACTATCAAACGCACACAGTTTCGCGAAGTACACGATAGGATGTTGAGAGGA 864
consensus_7540#0 --------------------------------------------
consensus_7540#2 --------------------------------------------
consensus_7540#1 AGTGAATAAAGTGAGTAAAAGATTTATATTTCCCAACAACACAC 908
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||