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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7544#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1198 fasta sequence
[CGCTGTTTCCGTAACCTTCGCGCTGAAAGATTGTTCGTCTATGTTAGCCGTACTTAAACGTAATTAATGTGTCATATATTCTNCATGTGTCAATGTAGAGTCCTGTTTATGGACGACGATCAACCCAAAAGGCAAAGCAAAACGAGGGCAAGCACCGGCAGACAGTAGTTTAAAAGCTCCCGCACATAATAAAGGAAACTCGTGTAAATAGTTCAATGCGAGAATGTTGAGCAAATTGTAGCAGAAGGTTAGGTCGGGTTGAAATAAGGTTTGTGTTAGGAAGATCGGGTCGGCGGAGTTTGAATGAGATTTAATATATTTCGATAAAAAGTTAGGGCAAATAATACTAAGCTAGCGCACAGAAACCATGTAAGATGTAAGCAGGTAATCTTCTTTACATCTTGTGGTTGTTGTAGAGAAGATGTTTAGTGAACAGTGTGTAAGGGATGCGTTACAGTAATACCATCCGCATCGGTGCAGCGCAGTGTTGCAACGGGCAGCAGTTCTGTCTATTGTTATTGTTGAAGC-CGTGTGTGAGTGTAAAAGCTTTCTATTTATTTATTTGCTCGTACTCGTACTTAAGCAAGAAAGTTTCGCTTCCACTGGAAAGTAAGGCCCCGTTGCCCTCGTCACTTATCTTCGTTAGTGCATCGGTTTGCCGGCATCGTGTAATTTGGTTTACCAGCAGTTGTAAAGATTCTATACTAAAAGGAGATATAATAGAGCATTTAAATGTCCTCGACACGGCAGTCTGTGTGCCAGTGTCCTGAGGCTGAGTATTAAAGCAAGCAAGCAAGCAACCAAGCAAGCAAGCAAGCATGCAAACAAACAGACACACAAAGATCCAGCAGCAGCTGCAGTGCAAATCAAGAACAATAGTGAGAACGGAACAGATAAATACTACTACTACGCGTGTTAGGTGCTAGTGTAAGTGATTGTGGTTGAATCATCATTGTAAATATCCTTTCCAACAAAGAAGCTACGAGCAGTAGTAGTACTAGGTGGCGAGCTAGAGGCGTGCGCGAAAGGATGATACAGTGAGCGCGAGTAACCATTATCGAAGTAAATGAGTGTCGAACCTCGTCGTTAACCGCTCCGCAGGCGAGTGTGTGAGTAGTTCCAAACACGCTAGAGATAATAAATGTGGTACAATTACCGTAAAAAAAAAAAAAAAAAAAAAAGGGCACAGGGGGGCGGG]
[+] EMBL BX620374 [CGCTGTTTCCGTAACCTTCGCGCTGAAAGATTGTTCGTCTATGTTAGCCGTACTTAAACGTAATTAATGTGTCATATATTCTNCATGTGTCAATGTAGAGTCCTGTTTATGGACGACGATCAACCCAAAAGGCAAAGCAAAACGAGGGCAAGCACCGGCAGACAGTAGTTTAAAAGCTCCCGCACATAATAAAGGAAACTCGTGTAAATAGTTCAATGCGAGAATGTTGAGCAAATTGTAGTAGAAGGTTAGGTCGGGTTGAAATAAGGTTTGTGTTAGGAAGATCGGGTCGGCGGAATTTGAATGAGATTTAATATATATTGATAAAAAGTTAGGGCAAATAATACTAAGCTAGCGCACAGAAACCATGTAAGATGTAAGCAGGTAATCTTCTTTACATCTTGTGGTTGTTGTANAGAAGATGTTTAGTGAACAGTGTGTAAGGGATGCGTTACAGTAATACCATCCGCATCGGTGCAGCGCAGTGTTGCAACGGGCAGCAGNTCTGTCTATTGTTATTGTTG ]
[+] EMBL CNS09PL8 [ ggGTTCAATGCGAGCATGTTGAGCAAATTGTAGCAGAAGGTTAGGTCGGGTTGAAATAAGGTTTGTGTTAGGAAGATCGGGTCGGCGGAGTTTGAATGAGATTTAATATATTTCGATAAAAAGTTAGGGCAAATAATACTAAGCTAGCGCACAGAAACCATGTAAGATGTAAGCAGGTAATCTTCTTTACATCTTGTGGTTGTTGTAGAGAAGATGTTTAGTGAACAGTGTGTAAGGGATGCGTTACAGTAATACCATCCGCATCGGTGCAGCGCAGTGTTGCAACGGGCAGCAGTTCTGTCTATTGTTATTGTTGAAGCGCGTGTGTGAGTGTAAAAGCTTTCTATTTATTTATTTGCTCGTACTCGTACTTAAGCAAGAAAGTTTCGCTTCCACTGGAAAGTAAGGCCCCGTTGCCCTCGTCACTTATCTTCGTTAGTGCATCGGTTTGCCGGCATCGTGTAATTTGGTTTACCAGCAGTTGTAAAGATTCTATACTAAAAGGAGATATAATAGAGCATTTAAATGTCCTCGACACGGCAGTCTGTGTGCCAGTATCCTGAGGCTGAGTATTAAAGCAAGCAAGCAAGCAACCAAGCAAGCAAGCAAGCATGCAAACAAACAGACACACAAAGATCCAGCAGCAGCTGCAGTGCAAATCAAGAACAATAGTGAGAACGGAACAGATAAATACTACTACTACGCGTGTTAGGTGCTAGTGTAAGTGATTGTGGTTGAATCATCATTGTAAATATCCTTTCCAACAAAGAAGCTACGAGCAGTAGTAGTACTAGGTGGCGAGCTAGAGGCGTGCGCGAAAGGATGATACAGTGAGCGCGAGTAACCATTATCGAAGTAAATGAGTGTCGAACCTCGTCGTTAACCGCTCCGCAGcg ]
[+] EMBL CNS09ILD [ AGCAAATTGTAGCAGAAGGTTAGGTCGGGTTGAAATAAGGTTTGTGTTAGGAAGATCGGGTCGGCGGAGTTTGAATGAGATTTAATATATTTCGATAAAAAGTTAGGGCAAATAATACTAAGCTAGGGCACAGAAACCATGTAAGATGTAAGCAGGTAATCTTCTTTACATCTTGTGGTTGTTGTAGAGAAGATGTTTAGTGAACAGTGTGTAAGGGATGCGTTACAGTAATACCATCCGCATCGGTGCAGCGCAGTGTTGCAACGGGCAGCAGTTCTGTCTATTGTTATTGTTGAAGC CGTGTGTGAGTGTAAAAGCTTTCTATTTATTTATTTGCTCGTACTCGTACTTAAGCAAGAAAGTTTCGCTTCCACTGGAAAGTAAGGCCCCGTTGCCCTCGTCACTTATCTTCGTTAGTGCATCGGTTTGCCGGCATCGTGTAATTTGGTTTACCAGCAGTTGTAAAGATTCTATACTAAAAGGAGATATAATAGAGCATTTAAATGTCCTCGACACGGCAGTCTGTGTGCCAGTGTCCTGAGGCTGAGTATTAAAGCAAGCAAGCAAGCAACCAAGCAAGCAAGCAAGCATGCAAACAAACAGACACACAAAGATCCAGCAGCAGCTGCAGTGCAAATCAAGAACAATAGTGAAAACGGAACAGATAAATACTACTACTACGCGTGTTAGGTGCTAGTGTAAGTGATTGTGGTTGAATCATCATTGTAAATATCCTTTCCAACAAAGAAGCTACGAGCAGTAGTAGTACTAGGTGGCGAGCTAGAGGCGTGCGCGAAAGGATGATACAGTGAGCGCGAGTCACCATTATCGAAGTAAATGAGTGTCGAACCTCGTCGTTAACCGCTCCGCA GCGAGTGTGTGAGTAGTTCCAAACACGCTAGAGATAATAAATGTGGTACAATTACCGTAAAAAAAAAAAAAAAAAAAAAAGGGCACAGGGGGGCGGG]
[-] EMBL CNS09PL9 [ AGTTTGAATGAGATTTAATATATTTCGATAAAAAGTTAGGGCAAATAATACTAAAGTAGCGCACAGAAACCATGTAAGATGTAAGCAGGTAATCTTCTTTACATCTTGTGGTTGTTGTAGAGAAGATGTTTAGTGAACAGTGTGTAAGGGATGCGTTACAGTAATACCATCCGCATCGGTGCAGCGCAGTGTTGCAACGGGCAGCAGTTCTGTCTATTGTTATTGTTGAAGC CGTGTGTGAGTGTAAAAGCTTTCTATTTATTTATTTGCTCGTACTCGTACTTAAGCAAGAAAGTTTCGCTTCCACTGGAAAGTAAGGCCCCGTTGCCCTCGTCACTTATCTTCGTTAGTGCATCGGTTTGCCGGCATCGTGTAATTTGGTTTACCAGCAGTTGTAAAGATTCTATACTAAAAGGAGATATAATAGAGCATTTAAATGTCCTCGACACGGCAGTCTGTGTGCCAGTGTCCTGAGGCTGAGTATTAAAGCAAGCAAGCAAGCAACCAAGCAAGCAAGCAAGCATGCAAACAAACAAACACACAAAGATCCAGCAGCAGCTGCAGTGCAAATCAAGAACAATAGTGAGAACGGAACAGATAAATACTACTACTACGCGTGTTAGGTGCTAGTGTAAGTGATTGTGGTTGAATCATCATTGTAAATATCCTTTCCAACAAAGAAGCTACGAGCAGTAGTAGTACTAGGTGGCGAGCTAGAGGCGTGCGCGAAAGGATGATACAGTGAGCGCGAGTAACCATTATCGAAGTAAATGAGTGTCGAACCTCGTCGTTAACCCCTCCGCAGGCGAGTGTGTGAGTAGTTCCAAACACGCTAGAGATAATAAATGTGGTACAATTACCGTAAAAAAAAAA ]
[-] EMBL CNS09ILE [ TGCATCGGTTTGCCGGCATCGTGTAATTTGGTTTACCAGCAGTTGTAAAGATTCTATACTAAAAGGGGATATAATAGAGCATTTAAATGTCCTCGACACGGCAGTCTGTGTGCCAGTGTCCTGAGGCTGAGTATTAAAGCAAGCAAGCAAGCAACCAAGCAAGCAAGCAAGCATGCAAACAAACAGACACACAAAGATCCAGCAGCAGCTGCAGTGCAAATCAAGAACAATAGTGAAAACGGAACAGATAAATACTACTACTACGCGTGTTAGGTGCTAGTGTAAGTGATTGTGGTTGAATCATCATTGTAAATATCCTTTCCAACAAAGAAGCTACGAGCAGTAGTAGTACTAGGTGGCGAGCTAGAGGCGTGCGCGAAAGGATGATACAGTGAGCGCGAGTAACCATTATCGAAGTAAATGAGTGTCGAACCTCGTCGTTAACCCCTCCGCAGGCGAGTGTGTGAGTAGTTCCAAACACGCTAGAGATAATAAATGT ]
[+] EMBL BX614952 [ GAGCAGTAGTAGTACTAGGTGGCGAGCTAGAGGCGTGCGCGAAAGGATGATACAGTGAGCGCGAGTAACCATTATCGAAGTAAATGAGTGTCGAACCTCGTCGTTAACCGCTCCGCAGGCGAGTGTGTGAGTAGTTCCAAACACGCTAGAGATAATAAATGTGGTA ]
consensusID : consensus_7544#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence
[CTCGGCAATCGGAACCGTACTGGACCTTTCGCAGACGCGAATGTGTATATAATATATACGAGGCAACAATTATTGATTAATTAAATGAAATTATAAACCCACACCACGGTCTCCCCTCTTCGAAACATTGCAGCAGCAGCACCAGCAGCAGTAAGTGCGGCGGCAACAGGATACATAATTATACAGCATGACAGCATGACAATTGGATCAGTAGCGATAACAGCGATGCAAAACATCCGTGGAATCTCATCCGTTGAAGAGTTGCATTGTGGTCTGTACGGTTTTAATGATATTTATACAGTCACATCGTCCACACGAAGCCGGCAGCAGCCCATGAGCATGGTTTTGTTTAGTTTGTTTCTATGAGATTAGCCGAAATTAAGGCCCAAACAGGGACAGAAAAGAATAGCGCCCGATGCCCGATCAATCAAGACTATCTTTAAGGATCGTTTGGGATGTCGCCATTAATGACATACAGGCCTTTAGAGACAGGATTATTAATCCCTTTCTGTAGAAAGATTGTTTTGTAGTATCTTCTTTTTTTAATTATGCTAAAATATGTATAATAAAATCAATACACGCTATATTTTTGTAACCGAGCTGATCAAAGAGGAAAAATAAAATAAATT]
[+] EMBL BX617551 [CTCGGCAATCGGAACCGTACTGGACCTTTCGCAGACGCGAATGTGTATATAATATATACGAGGCAACAATTATTGATTAATTAAATGAAATTATAAACCCACACCACGGTCTCCCCTCTTCGAAACATTGCAGCAGCAGCACCAGCAGCAGTAAGTGCGGCGGCAACAGGATACATAATTATACAGCATGACAGCATGACAATTGGATCAGTAGCGATAACAGCGATGCAAAACATCCGTGGAATCTCATCCGTTGAAGAGTTGCATTGTGGTCTGTACGGTTTTAATGATATTTATACAGTCACATCGTCCACACGAAGCCGGCAGCAGCCCATGAGCATGGTTTTGTTTAGTTTGTTTCTATGAGATTAGCCGAAATTAAGGCCCAAACAGGGACAGAAAAGAATAGCGCCCGATGCCCGATCAATCAAGACTATCTTTAAGGATCGTTTGGGATGTCGCCATTAATGACATACAGGCCTTTAGAGACAGGATTATTAATCCCTTTCTGTAGAAAGATTGTTTTGTAGTATCTTCTTTTTTTAATTATGCTAAAATATGTATAATAAAATCAATACACGCTATATTTTTGTAACCGAGCTGATCAAAGAGGAAAAATAAAATAAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7544#0 CGCTGTTTCCGTAACCTTCGCGCTGAAAGATTGTTCGTCTATGTTAGCCGTACTTAAACG 60
consensus_7544#1 ------------------------------------------------------------
consensus_7544#0 TAATTAATGTGTCATATATTCTNCATGTGTCAATGTAGAGTCCTGTTTATGGACGACGAT 120
consensus_7544#1 ------------------CTCGGCAATCGGAACCGTACTGGACCTTTCGCAGACGCGAAT 42
** ** * * *** * * ** **** **
consensus_7544#0 CAACCCAAAAGGCAAAGCAAAACGAGGGCAAGCACCGGCAGACAGTAGTTTAAAAGCTCC 180
consensus_7544#1 GTGTATATAATATATA-CGAGGCAACAATTATTGATTAATTAAATGAAATTATAAACCC- 100
* ** * * * * * * * * * * *** ** * *
consensus_7544#0 CGCACATAATAAAGGAAACTCGTGTAAATAGTTCAATGCGAGAATGTTGAGCA--AATTG 238
consensus_7544#1 ---ACACCACGGTCTCCCCTCTTCGAAACATTGCAGCAGCAGCACCAGCAGCAGTAAGTG 157
*** * *** * *** * * ** ** * **** ** **
consensus_7544#0 TAGCAGAAGGTTAGGTCGGGTTGAAATAAGGTTTG-TGTTAGGAAGATCGGGTCGGCGGA 297
consensus_7544#1 CGGCGGCAA--CAGGATACATAATTATACAGCATGACAGCATGACAATTGGATCAGTAGC 215
** * * *** * *** * ** * ** ** ** ** * *
consensus_7544#0 GTTTGAATGAGATTTAATATATTTCGATAAAAAGTTAGGGCAAATAATACTAAGCTAGCG 357
consensus_7544#1 GAT-AACAGCGATGCAAAACATCCGTGGAATCTCATCCGTTGAAGAGTTGCATTGTGGTC 274
* * * * *** ** * ** ** * * ** * * * * *
consensus_7544#0 CACAGAAACCATGTAAGATGTAAGCAGGTA-ATCTTCTTTAC--ATCTTGTGGTTGTTGT 414
consensus_7544#1 TGTACGGTTTTAATGATATTTATACAGTCACATCGTCCACACGAAGCCGGCAGCAGCCCA 334
* * * ** ** *** * *** ** ** * * * * *
consensus_7544#0 AGAGAAGATGTTTAGTGAACA-GTGTGTAAGGGATGCGTTACAGTAATACCATCCGCATC 473
consensus_7544#1 TGAGCATGGTTTTGTTTAGTTTGTTTCTATGAGATTAGCCGAAAT--TAAGGCCCAAACA 392
*** * *** * * ** * ** * *** * * * ** ** *
consensus_7544#0 GGTGCAGCGCAGTGTTGCAACGGGCAGCAGTTCTGTCTATTGTTATTGTTGAAGCCGTGT 533
consensus_7544#1 GGGACAGAAAAGAATAGCGCCCGATGCCCGATCAATC-AAGACTATCTTTAAGGATC--- 448
** *** ** * ** * * * * ** ** * *** ** * *
consensus_7544#0 GTGAGTGTAAAAGCTTTCTATTTATTTATTTGCTCGTACTCGTACTTAAGCAAGAAAGTT 593
consensus_7544#1 ----GTTTGGGATGTCGCCATT-AATGACATACAGGCCTTTAGAGACAGG-ATTATTAAT 502
** * * * * *** * * * * * * * * * * * * *
consensus_7544#0 TCGCTTCCACTGGAAAGTAAGGCCCCGTTGCCCTCGTCACTTATCTTCGTTAGTGCATCG 653
consensus_7544#1 CCCTTTCTGTAGAAAGATTGTTTTGTAGTATCTTCTTTTTTTAATTATGCTAAAATAT-- 560
* *** * ** * * * ** * *** * * ** **
consensus_7544#0 GTTTGCCGGCATCGTGTAATTTGGTTTACCAGCAGTTGTAAAGATTCTATACTAAAAGGA 713
consensus_7544#1 GTATAATAAAATC----AATACACGCTAT--ATTTTTGTAACCGAGCTGATCAAAGAGGA 614
** * *** *** ** ****** ** * ** ****
consensus_7544#0 GATATAATAGAGCATTTAAATGTCCTCGACACGGCAGTCTGTGTGCCAGTGTCCTGAGGC 773
consensus_7544#1 AAAATAAAATAA-ATT-------------------------------------------- 629
* **** * * ***
consensus_7544#0 TGAGTATTAAAGCAAGCAAGCAAGCAACCAAGCAAGCAAGCAAGCATGCAAACAAACAGA 833
consensus_7544#1 ------------------------------------------------------------
consensus_7544#0 CACACAAAGATCCAGCAGCAGCTGCAGTGCAAATCAAGAACAATAGTGAGAACGGAACAG 893
consensus_7544#1 ------------------------------------------------------------
consensus_7544#0 ATAAATACTACTACTACGCGTGTTAGGTGCTAGTGTAAGTGATTGTGGTTGAATCATCAT 953
consensus_7544#1 ------------------------------------------------------------
consensus_7544#0 TGTAAATATCCTTTCCAACAAAGAAGCTACGAGCAGTAGTAGTACTAGGTGGCGAGCTAG 1013
consensus_7544#1 ------------------------------------------------------------
consensus_7544#0 AGGCGTGCGCGAAAGGATGATACAGTGAGCGCGAGTAACCATTATCGAAGTAAATGAGTG 1073
consensus_7544#1 ------------------------------------------------------------
consensus_7544#0 TCGAACCTCGTCGTTAACCGCTCCGCAGGCGAGTGTGTGAGTAGTTCCAAACACGCTAGA 1133
consensus_7544#1 ------------------------------------------------------------
consensus_7544#0 GATAATAAATGTGGTACAATTACCGTAAAAAAAAAAAAAAAAAAAAAAGGGCACAGGGGG 1193
consensus_7544#1 ------------------------------------------------------------
consensus_7544#0 GCGGG 1198
consensus_7544#1 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||