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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7557#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1881 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGGCAAGTTGATGCCAAAAAAATAACAATTGACCCTTTCTTTATCATCGGCCGCCCACAGCAGACACTGCTCGATCGGGCGGGCAACATTGATATAAATGCATCTCCAGCCATCGTGCGCCAAAGGAATCAGTTTCTGTGTTGCATTTGGCCCCACACTCCCTTGAAGCGCTTCGTGTGCGCCAAACAAGGGACTATTCTCTCTCCGGGGCTAATGGCGGCTGCACCTGCTGCTGCTGCTGCTGCTTTCAAAAACGAGTTGCTCTCTCCATCTTCGTACATCGGTTACGGTGGCTCCTCCTTCTGCTGCCGTGTTACTACCTCTTATGGCTAGAATATTGGACCACATTCATTCACTGTCCCGCATTCATGCACAGTCCTCGCACTCGCACACACTGTCTCAATCATACTAACCTCTTCTCGCACGCTACAACGATTACGCAAACATGAGTTTTAATTCTCCTACATCCTAATGCCTCCTATACGTTATCCTTTCCCCATTGCTCAAGCTACTTGACCGTATTGCGCCGCCGC-TCGGTAGATATGGGTGCTGATCTAGCCATTCCATCCAGGTCGGCGGCGCATACGTAGCACACGCGGTTACACGTACTTCGCCGTCGCGTTCTCGCATCTCGCTCGCCTTCGTATACGTGTTCCAAACCGCAAATAGCCAATTTCGCCATTTTGCACATTATAATACACTATCTTCGCAGCTCGCCCTGTACTGCCTGTACTATCTGCAGACTGCAGATCATGCTTTCATTACTTTCTAACTCCGCGCGCTAAACACCACACCACGTTCTACTTATACCACATATCGTTTTCTTCCTCCGGTTTCGAGTGTTTTTTCTTCTTCTTTCACTCACTCGAAACGGATAAGGCACTTGAATTGCTTGCAGTTCCTTGTGTCAGCTTGCACG-CGGGGGTGTGTGTGTAATCTTGCCGCTTATCCGTACACGATTACTCACTCCGTGCGGTCATTTTTCCTCCTCTCATTCTTGTCGCCTA--TCTTGCGCTACATCCCTCACATACTACGTAATTGGATACTAGTTGCGCGCTTCAAATCTCACATTCATCTAAGTGGATTTAAAAAAAAAAAAGATTTAAAAATAAAATAATAATCCGTACGTACAAGCTAATCGACTAACCACTAATAATTCGTCCAATGTGCACAAGCACATCGGTGCCCGTGTGCAAGCAGGATGTAGTAATAATAAGAGATGTATATAGGTATCATTAACGGAACATAACTCGGACAAGGAGCAGTTTTCCCCCGTTCAGTACGGGAACCACGCTGCGTTTCCTTTTCATTGTTTCCTAAGCTGCGATCCCACCATACATACACATACACACACATACATACGCACACTACTTACACTCTTCTTTCCCTATTTGTATCTCCAAGTAGAACGATTGAGTCTTATATCTAGTTATATTGTTTGGGGCTTGAGTTGTATCTCTAAGTAGTACGTTCGGAGCTTGAGAGTCTCCAGATCAGGTCTGCAAACGATCTGGTCTATGTAGGCTGATGGTATTCCTTGGAGATGCAAGAACATTGTAAGTAGTATTTGT-CTT-TGTGTGTGTGTGTGTGCATGTCAGTGGATGCGTGTACTAATCGCTGGCGTAGTGGGCTACTATTACTCTACATAAGATGGTTCTACGCGTTCTGTGGCTACGGCAAACGTCGCCGGACGTTAGATGATGTCGTAGAGCGTGTTATCCGGTTTACTACTCGTCGGCGGCCACCGCTGCAACGGCGGCGGCGGCTGCTGCCGCTGCTGCCGCTGCACTGCCATTGCCGCTGCTGGCTGCCCCACCGTTGAATGCCACGGACGCGTGGGCGGACGCGTGGGCGG]
[+] EMBL BM576313 [CCGCCCACGCGTCCGCCCACGCGTCCGGGCAAGTTGATGCCAAAAAAATAACAATTGACCCTTTCTTTATCATCGGCCGCCCACAGCAGACACTGCTCGATCGGGCGGGCAACATTGATATAAATGCATCTCCAGCCATCGTGCGCCAAAGGAATCAGTTTCTGTGTTGCATTTGGCCCCACACTCCCTTGAAGCGCTTCGTGTGCGCCAAACAAGGGACTATTCTCTCTCCGGGGCTAATGGCGGCTGCACCTGCTGCTGCTGCTGCTGCTTTCAAAAACGAGTTGCTCTCTCCATCTTCGTACATCGGTTACGGTGGCTCCTCCTTCTGCTGCCGTGTTACTACCTCTTATGGCTAGAATATTGGACCACATTCATTCACTGTCCCGCATTCATGCACAGTCCTCGCACTCGCACACACTGTCTCAATCATACTAACCTCTTCTCGCACGCTACAACGATTACGCAAACATGAGTTTTAATTCTCCTACATCCTAATGCCTCCTATACGTTATCCTTTCCCCATTGCTCAAGCTACTTGACCGTATTGCGCCGCCGC TCGGTAGATATGGGTGCTGATCTAGCCATTCCATCCAGGTCGGCGGCGCATACGTAGCACACGCGGTTACACGTACTTCGCCGTCGCGTTCTCGCATCTCGCTCGCCTTCGTATACGTGTTCCAAACCGCAAATAGCCAATTTCGCCAT ]
[-] EMBL BM622560 [ CGAGTTGCTCTCTCCATCTTCGTATATCGGTTACGGTGGCTCCTCCTTCTGCTGCCGTGTTACTACCTCTTATGGCTAGAATATTGGACCACATTCATTCACTGTCCCGCATTCATGCACAGTCCTCGCACTCGCACACACTGTCTCAATCATACTAACCTCTTCTCGCACGCTACAACGATTACGCAAACATGAGTTTTAATTCTCCTACATCCTAATGCCTCCTATACGTTATCCTTTCCCCATTGCTCAAGCTACTTGACCGTATTGCGCCGCCGCGCCGGTAGATATGAGAGCTGATCTAGCCATTCCATCCAGGTCGGCGGCGCATACGTAGCACACGCGGTTACACGTAC TCGCCGTCGCGTTCTCGCATCTCGCTCGCCTTCGTATACGTGTTCCAAACCGCAAATAGCCAATTTCGCCATTTTGCACATTATAATACACTATCTTCGCAGCTCGCCCTGTACTGCCTGTACTATCTGCAGACTGCAGATCATGCTTTCATTACTTTCTAACTCCGCGCGCTAAACACCACACCACGTTCTACTTATACCACATATCGTTTTCTTCCTCCGGTTTCGAGTGTTTTTTCTTCTTCTTTCACTCACTCGAAACGGATAAGGCACTTGAATTGCTTGCAGTTCCTTGTGTCAGCTTGCACG CGG ]
[-] EMBL BM625971 [ AGACTGCAGATCATGCTTTCATTACTTTCTAACTCCGCGCGCTAAACACCACACCACGTTCTACTTATACCACATATCGTTTTCTTCCTCCGGTTTCGAGTGTTTTTTCTTCTTCTTTCACTCACTCGAAACGGATAAGGCACTTGAATTGCTTGCAGTTCCTTGTGTCAGCTTGCACG GTGGGTGTGTGTGTAATCTTGCCGCTTATCCGTACACGATTACTCACTCCGTGCGGTCATTTTTCCTCCTCTCATTCTTGTCGCCTA TCTTGCGCTACATCCCTCACATACTACGTAATTGGATACTAGT ]
[-] EMBL BM625627 [ AGGCACTTGAATTGCTTGCAGTTCCTTGTGTCAGCTTGCACGATGGGTGTGTGTGTGTAATCTTGTCGCTTATCCGGACACGATTACTCACTCCGTGCGATCATTTTTCCTTTTCTCATTCTTCTCGCCTAACTCTCGCGCTACATCCCTCACATACTACGTAATTGGATACTAGTTGCGCGCTTCAAATCTCACATTCATCTAAGTGGATTTAAAAAAAAAAAAGATTTAAAAATAAAATAATAATCCGTACGTACAAGCTAATCGACTAACCACTAATAATTCGTCCAATGTGCACAAGCACATCGGTGCCCGTGTGCAAGCAGGATGTAGTAATAATAAGAGATGTATATAGGTATCATTAACGGAACATAACTCGGACAAGGAGCAGTTTTCCCCCGTTCAGTACGGGAACCACGCTGCGTTTCCTTTTCATTGTTTCCTAAGCTGCGATCCCACCATACATACACATACACACACATACATACGCACACTACTTACACTCTTCTTTCCCTATTTGTATCTCCAAGTAGAACGATTGAGTCTTATATCTAGTTATATTGTTTGGGGCTTGAGTTGTATCTCTAAGTAGTACGTTCGGAGCTTGAGAGTCTCCAGATCAGGTCTGCAAACGATCCGG ]
[-] EMBL BM651126 [ CGTTACATCCCTCACATACTACGTAATTGGATACTAGTTGCGCGCTTCAAATCTCACATTCATCTAAGTGGATTTAAAAAAAAAAAAGATTTAAAAATAAAATAATAATCCGTACGTACAAGCTAATCGACTAACCACTAATAATTCGTCCAATGTGCACAAGCACATCGGTGCCCGTGTGCAAGCAGGATGTAGTAATAATAAGAGATGTATATAGGTATCATTAACGGAACATAACTCGGACAAGGAGCAGTTTTCCCCCGTTCAGTACGGGAACCACGCTGCGTTTCCTTTTCATTGTTTCCTAAGCTGCGATCCCACCATACATACACATACACACACATACATACGCACACTACTTACACTCTTCTTTCCCTATTTGTATCTCCAAGTAGAACGATTGAGTCTTATATCTAGTTATATTGTTTGGGGCTTGAGTTGTATCTCTAAGTAGTACGTTCGGAGCTTGAGAGTCTCCAGATCAGGTCTGCAAACGATCTTGTCTATGTAGGCTGATGGTATTCCTTGGAGATGCAAGAACATTGTAAGTAGTATTTGTGCTTGTGTGTGTGTGTGTGTGCATGTCAGTGGATGCGTGTACTAATCGCTGGCGTAGTGGGCTACTATTACTCTACATAAGATGGTTCTACGCGTTCTGTGGCTACGGCAAACGTCGCCGG ]
[-] EMBL BM629638 [ TATTTGTATCTCCAAGTAGAACGATTGAGTCTTATATCTAGTTATATTGTTTGGGGCTTGAGTTGTATCTCTAAGTAGTACGTTCGGAGCTTGAGAGTCTCCAGATCAGGTCTGCAAACGATCTAGTCTATGTCGGCTGATGGTATTTCTTGGAGATGCGAGAACATTGTAAGTAGTATTTGT CTT TGTGTGTGTGTGTGTGCATGTCAGTGGATGCGTGTACTAATCGCTGGCGTAGTGGGCTACTATTACTCTACATAAGATGGTTCTACGCGTTCTGTGGCTACGGCAAACGTCGCTTAACGTTAGATGATGTCGTAGAGCGTGTTATCCGGTTTACTACTCGTCGGCGGCCACCGCTGCAACGGCGGCGGCGGCTGCTGCCGCTGCTGCCGCTGCACTGCCATTGCCGCTGCTGGCTGCCCCACCGTTGAATGCCACGGACGCGTGGGCGGACGCGTGGGCGG]
consensusID : consensus_7557#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence
[GTGCGCCAAACAAGGGACTATTCTCTCTCCGGGGCTAATGGCGGCTGCACCTGCTGCTGCTGCTGCTGTTGCTGCTTTCAAAAACGAGTTGCTCTCTCCATCTTCGTATATCGGTTACGGTGGCTCCTCCTTCTGCTGCCGTGTTACTACCTCTTATGGCTAGAATATTGGACCACAGTTCATTCCAACTGGTCCCCGCAATTCATGCCAACAAGTCCCTTCGCACCTCGCACACAACTGTTCCTTCAATCATACTTAAACCTCTTCCTCGCACCGCTTACAACGATTACGCAAAACATGAGTTTTAATTCTCCTACATCCTAATGCCTCCTATACGTTATCCTTTCCCCATTGCTCAAGCTACTTGACCGTATTGCGCCGCCGCGCCGGTAGATATGAGAGCTGATCTAGCCATTCCATCCAGGTCGGCGGCGCATACGTAGCACACGCGGTTACACGTACTCGCCGTCGCGTTCTCGCATCTCGCTCGCCTTCGTATACGTGCCTCGTGCCGATCT]
[-] EMBL BX467812 [GTGCGCCAAACAAGGGACTATTCTCTCTCCGGGGCTAATGGCGGCTGCACCTGCTGCTGCTGCTGCTGTTGCTGCTTTCAAAAACGAGTTGCTCTCTCCATCTTCGTATATCGGTTACGGTGGCTCCTCCTTCTGCTGCCGTGTTACTACCTCTTATGGCTAGAATATTGGACCACAGTTCATTCCAACTGGTCCCCGCAATTCATGCCAACAAGTCCCTTCGCACCTCGCACACAACTGTTCCTTCAATCATACTTAAACCTCTTCCTCGCACCGCTTACAACGATTACGCAAAACATGAGTTTTAATTCTCCTACATCCTAATGCCTCCTATACGTTATCCTTTCCCCATTGCTCAAGCTACTTGACCGTATTGCGCCGCCGCGCCGGTAGATATGAGAGCTGATCTAGCCATTCCATCCAGGTCGGCGGCGCATACGTAGCACACGCGGTTACACGTACTCGCCGTCGCGTTCTCGCATCTCGCTCGCCTTCGTATACGTGCCTCGTGCCGATCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7557#0 CCGCCCACGCGTCCGCCCACGCGTCCGGGCAAGTTGATGCCAAAAAAATAACAATTGACC 60
consensus_7557#1 ------------------------------------------------------------
consensus_7557#0 CTTTCTTTATCATCGGCCGCCCACAGCAGACACTGCTCGATCGGGCGGGCAACATTGATA 120
consensus_7557#1 ------------------------------------------------------------
consensus_7557#0 TAAATGCATCTCCAGCCATCGTGCGCCAAAGGAATCAGTTTCTGTGTTGCATTTGGCCCC 180
consensus_7557#1 ------------------------------------------------------------
consensus_7557#0 ACACTCCCTTGAAGCGCTTCGTGTGCGCCAAACAAGGGACTATTCTCTCTCCGGGGCTAA 240
consensus_7557#1 ----------------------GTGCGCCAAACAAGGGACTATTCTCTCTCCGGGGCTAA 38
**************************************
consensus_7557#0 TGGCGGCTGCACCTGCTGCTGCTGCTGCTG------CTTTCAAAAACGAGTTGCTCTCTC 294
consensus_7557#1 TGGCGGCTGCACCTGCTGCTGCTGCTGCTGTTGCTGCTTTCAAAAACGAGTTGCTCTCTC 98
****************************** ************************
consensus_7557#0 CATCTTCGTACATCGGTTACGGTGGCTCCTCCTTCTGCTGCCGTGTTACTACCTCTTATG 354
consensus_7557#1 CATCTTCGTATATCGGTTACGGTGGCTCCTCCTTCTGCTGCCGTGTTACTACCTCTTATG 158
********** *************************************************
consensus_7557#0 GCTAGAATATTGGACCACA-TTCATTC--ACTG--TCCCGCA-TTCATGC--ACAG---T 403
consensus_7557#1 GCTAGAATATTGGACCACAGTTCATTCCAACTGGTCCCCGCAATTCATGCCAACAAGTCC 218
******************* ******* **** ****** ******* ***
consensus_7557#0 CCTCGCAC-TCGCACACA-CTGTC---TCAATCATACT--AACCTCTTC-TCGCACG--C 453
consensus_7557#1 CTTCGCACCTCGCACACAACTGTTCCTTCAATCATACTTAAACCTCTTCCTCGCACCGCT 278
* ****** ********* **** *********** ********* ******
consensus_7557#0 TACAACGATTACGCAAA-CATGAGTTTTAATTCTCCTACATCCTAATGCCTCCTATACGT 512
consensus_7557#1 TACAACGATTACGCAAAACATGAGTTTTAATTCTCCTACATCCTAATGCCTCCTATACGT 338
***************** ******************************************
consensus_7557#0 TATCCTTTCCCCATTGCTCAAGCTACTTGACCGTATTGCGCCGCCGC-TCGGTAGATATG 571
consensus_7557#1 TATCCTTTCCCCATTGCTCAAGCTACTTGACCGTATTGCGCCGCCGCGCCGGTAGATATG 398
*********************************************** ***********
consensus_7557#0 GGTGCTGATCTAGCCATTCCATCCAGGTCGGCGGCGCATACGTAGCACACGCGGTTACAC 631
consensus_7557#1 AGAGCTGATCTAGCCATTCCATCCAGGTCGGCGGCGCATACGTAGCACACGCGGTTACAC 458
* *********************************************************
consensus_7557#0 GTACTTCGCCGTCGCGTTCTCGCATCTCGCTCGCCTTCGTATACGTGTTCCAAACCGCAA 691
consensus_7557#1 GTACT-CGCCGTCGCGTTCTCGCATCTCGCTCGCCTTCGTATACGTGCCTCGTGCCG-AT 516
***** ***************************************** * *** *
consensus_7557#0 ATAGCCAATTTCGCCATTTTGCACATTATAATACACTATCTTCGCAGCTCGCCCTGTACT 751
consensus_7557#1 CT---------------------------------------------------------- 518
*
consensus_7557#0 GCCTGTACTATCTGCAGACTGCAGATCATGCTTTCATTACTTTCTAACTCCGCGCGCTAA 811
consensus_7557#1 ------------------------------------------------------------
consensus_7557#0 ACACCACACCACGTTCTACTTATACCACATATCGTTTTCTTCCTCCGGTTTCGAGTGTTT 871
consensus_7557#1 ------------------------------------------------------------
consensus_7557#0 TTTCTTCTTCTTTCACTCACTCGAAACGGATAAGGCACTTGAATTGCTTGCAGTTCCTTG 931
consensus_7557#1 ------------------------------------------------------------
consensus_7557#0 TGTCAGCTTGCACGCGGGGGTGTGTGTGTAATCTTGCCGCTTATCCGTACACGATTACTC 991
consensus_7557#1 ------------------------------------------------------------
consensus_7557#0 ACTCCGTGCGGTCATTTTTCCTCCTCTCATTCTTGTCGCCTATCTTGCGCTACATCCCTC 1051
consensus_7557#1 ------------------------------------------------------------
consensus_7557#0 ACATACTACGTAATTGGATACTAGTTGCGCGCTTCAAATCTCACATTCATCTAAGTGGAT 1111
consensus_7557#1 ------------------------------------------------------------
consensus_7557#0 TTAAAAAAAAAAAAGATTTAAAAATAAAATAATAATCCGTACGTACAAGCTAATCGACTA 1171
consensus_7557#1 ------------------------------------------------------------
consensus_7557#0 ACCACTAATAATTCGTCCAATGTGCACAAGCACATCGGTGCCCGTGTGCAAGCAGGATGT 1231
consensus_7557#1 ------------------------------------------------------------
consensus_7557#0 AGTAATAATAAGAGATGTATATAGGTATCATTAACGGAACATAACTCGGACAAGGAGCAG 1291
consensus_7557#1 ------------------------------------------------------------
consensus_7557#0 TTTTCCCCCGTTCAGTACGGGAACCACGCTGCGTTTCCTTTTCATTGTTTCCTAAGCTGC 1351
consensus_7557#1 ------------------------------------------------------------
consensus_7557#0 GATCCCACCATACATACACATACACACACATACATACGCACACTACTTACACTCTTCTTT 1411
consensus_7557#1 ------------------------------------------------------------
consensus_7557#0 CCCTATTTGTATCTCCAAGTAGAACGATTGAGTCTTATATCTAGTTATATTGTTTGGGGC 1471
consensus_7557#1 ------------------------------------------------------------
consensus_7557#0 TTGAGTTGTATCTCTAAGTAGTACGTTCGGAGCTTGAGAGTCTCCAGATCAGGTCTGCAA 1531
consensus_7557#1 ------------------------------------------------------------
consensus_7557#0 ACGATCTGGTCTATGTAGGCTGATGGTATTCCTTGGAGATGCAAGAACATTGTAAGTAGT 1591
consensus_7557#1 ------------------------------------------------------------
consensus_7557#0 ATTTGTCTTTGTGTGTGTGTGTGTGCATGTCAGTGGATGCGTGTACTAATCGCTGGCGTA 1651
consensus_7557#1 ------------------------------------------------------------
consensus_7557#0 GTGGGCTACTATTACTCTACATAAGATGGTTCTACGCGTTCTGTGGCTACGGCAAACGTC 1711
consensus_7557#1 ------------------------------------------------------------
consensus_7557#0 GCCGGACGTTAGATGATGTCGTAGAGCGTGTTATCCGGTTTACTACTCGTCGGCGGCCAC 1771
consensus_7557#1 ------------------------------------------------------------
consensus_7557#0 CGCTGCAACGGCGGCGGCGGCTGCTGCCGCTGCTGCCGCTGCACTGCCATTGCCGCTGCT 1831
consensus_7557#1 ------------------------------------------------------------
consensus_7557#0 GGCTGCCCCACCGTTGAATGCCACGGACGCGTGGGCGGACGCGTGGGCGG 1881
consensus_7557#1 --------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||