|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7574#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1621 fasta sequence
[CCGCGGACGCGTGGGTTTCGATTGATTGCATCGCCCTCAGAAGCGGCTGGTGCGGTTTCGAACGAGCATCCTAACAATCCCCGACTGCAGCGCGAGATGAGAGGGCAGCGAAAGCCGAAGAAGATCACCATCGAGAGCTATCGCAATCGGCTGCTGGATGGGGGACCGGCGCCGTCGGACGAGTACCGTGGCATCCTGCCAAAAAGCTCCCGCGAGCAGACACCGATGGACGAGGTGCCGCCACCGGCGGCCACAGAGATCCTGGGGGAGATAAATTTCTTTTCCGGCAATCCGTTCGTCGAGGTTACGAAAGGCATCCTTCATCTGTTCAAGCGGAACGAACGGGCGGACATATCGGAGGGTGGCGTTTCCAAGACACTTTGCCTGATTGCAGTGCCGTCATCGCTGAACTGTCACGATATTCTCAACTTCATTGCACCGTGCCAGAAGGAGATACAGCACGTGCGCATCTTGCGCGATGGTTCGCCGAACCAGTTCATGGTGCTGCTCGAGTTCCGCTGCGTCGAGGGTGCGATCGAGTTTTTCAAAACGTTCAACGGCGCACCGTACAACAGCCTGGAGCCGGACACACTGTGCCACG-CCGTGTGGGTGTCGAGCGTCGAGTGGGGTCTGGACGATTGCTGCG-TGACGCCGCAGGGCCACACCGAGCTACCGTCCTGTCCGGTGTGTCTCGAGCGGATGGACGAAAGCGTCGACGGTGTGCTGACCATCCTGTGCAACCACGTGTTCCATGCCGGGTGTCTCAACAAGTGGGGCGACTCGACCTGCCCGGTGTGCCGCTGCGTGCAGACGCCCGAACTGTCCGAACAGTCCGTGTGCATGGAGTGCGAGGGTACGGAGGCACTGTGGATTTGCCTGATCTGCGGGCACATCGGGTGCGGCCGGTATCAGGGCGGTCACGCCGCCTCCCACTATCGGACGACAAATCACACGTACGCGCTGCAGCTCGGCACGAACCGCGTGTGGGACTATGCGGGCGATAATTTTGTGCACCGCTTGCTGCAGAGCAAATCGGATGGAAAGCTGGTCGCGACACAATCACCCGGCGGGGACGATGGTGAGGAGAAGATCGACTCGATGCAGCTGGAGTTCACCTACCTGCTGACGTCGCAGCTCGACGCGCAGCGGGATTATTACGAGGAGCGGCTTTCGCGCCTCGAGTCCATCATCTGTGGCGAGCGGCATAAGCTGCAGGAGGACCACGAGCAGGCGAAACAAAAGACGGCACAGTTGGAGGTGAAGCTGCACGCGCTTACGAAAGAGAAGAACAGTCTGGAACGGAAAGTCTCGCAACTAACGTCAAAATTAGGCACGGTGCTGGGTGAATTGGCGGAGGAGAAGCAGTTTGGTAAAACGCTGCAAGCAAATCAAGTTACCTGGCAAACTAAATTCACCACCCTGGAGAAGCAGTGCACGGAGAAGGAGCAGGAAATTGTCGAACTCAAGGAGCAGGTGCGCGATCTCATGTTCTACATGGAGGCACAGAACACGATTGCCGGCTCGGAGCTCAAGAGTGAGCTGGTCGACGGGACGGTAGTGCTTCCGGCGGACGCAGTTGCCGCCGCCTCATCCATTTCCGCCAGCGGCGCATTTGCCGCCG]
[+] EMBL BM603958 [CCGCGGACGCGTGGGTTTCGATTGATTGCATCGCCCTCAGAAGCGGCTGGTGCGGTTTCGAACGAGCATCCCAACAATCCCCGGCTGCAGCGCGAGATGAGAGGGCAGCGAAAGCCGAAGAAGATCACCATCGAGAGCTATCGTAATCGGCTGCTGGATGGGGGACCGGCGCCGTCGGACGAGTACCGTGGCATCCTGCCAAAAAGCTCCCGCGAGCAGACACCGATGGACGAGGTGCCGCCACCAGCGGCCACAGAGATCCTGGGGGAGATAAATTTCTTTTCCGGCAATCCGTTCGTCGAGGTTACGAAAGGCATCCTTCATCTGTTCAAGCGGAACGAACGGGCGGACATATCGGAGGGTGGCGTTTCGAAGACACTTTGTCTGATTGCTGTGCCGTCATCGCTCAACTGTCACGATATTCTCAACTTCATCGCACCGTGCCAGAAGGAGATACAGCACGTGCGCATCTTGCGCGATGGTTCGCCGAACCAGTTCATGGTGCTGCTCGAGTTCCGCTGCGTCGAGGGTGCGATCGAGTTTTTCAAAACGTTCAACGGCGCACCGTACAACAGCCTGGAACCGGACACACTGTGCCACG CGGTGTGGGTGTCGAGCGTCGAGTGGGGTCTGGACGATTGCTGCG TGACGCCGCAGGGCCACACCGAGCTACCGTCCTGTCCGGTGTGTCTCGAG ]
[+] EMBL BM623445 [ ccgcaTTTCGATTGATTGCATCGCCCTCAGAAGCGGCTGGTGCGGTTTCGAACGAGCATCCTAACAATCCCCGACTGCAGCGCGAGATGAGAGGGCAGCGAAAGCCGAAGAAGATCACCATCGAGAGCTATCGCAATCGGCTGCTGGATGGGGGACCGGCGCCGTCGGACGAGTACCGTGGCATCCTGCCAAAAAGCTCCCGCGAGCAGACACCGATGGACGAGGTGCCGCCACCGGCGGCCACAGAGATCCTGGGGGAGATAAATTTCTTTTCCGGCAATCCGTTCGTCGAGGTTACGAAAGGCATCCTTCATCTGTTCAAGCGGAACGAACGGGCGGACATATCGGAGGGTGGCGTTTCCAAGACACTTTGCCTGATTGCAGTGCCGTCATCGCTGAACTGTCACGATATTCTCAACTTCATTGCACCGTGCCAGAAGGAGATACAGCACGTGCGCATCTTGCGCGATGGTTCGCCGAACCAGTTCATGGTGCTGCTCGAGTTCCGCTGCGTCGAGGGTGCGATCGAGTTTTTCAAAACGTTCAACGGCGCACCGTACAACAGCCTGGAGCCGGACACACTGTGCCACG CCGTGTGGGTGTCGAGCGTCGAGTGGGGTCTGGACGATTGCTGCG TGACGCCGCAGGGCCACACCGAGCTACC ]
[+] EMBL BM623398 [ ccgGCGGTTTCGAACGAGCATCCTAACAATCCCCGACTGCAGCGCGAGATGAGAGGGCAGCGAAAGCCGAAGAAGATCACCATCGAGAGCTATCGCAATCGGCTGCTGGATGGGGGACCGGCGCCGTCGGACGAGTACCGTGGCATCCTGCCAAAAAGCTCCCGCGAGCAGACACCGATGGACGAGGTGCCGCCACCGGCGGCCACAGAGATCCTGGGGGAGATAAATTTCTTTTCCGGCAATCCGTTCGTCGAGGTTACGAAAGGCATCCTTCATCTGTTCAAGCGGAACGAACGGGCGGACATATCGGAGGGTGGCGTTTCCAAGACACTTTGCCTGATTGCAGTGCCGTCATCGCTGAACTGTCACGATATTCTCAACTTCATTGCACCGTGCCAGAAGGAGATACAGCACGTGCGCATCTTGCGCGATGGTTCGCCGAACCAGTTCATGGTGCTGCTCGAGTTCCGCTGCGTCGAGGGTGCGATCGAGTTTTTCAAAACGTTCAACGGCGCACCGTACAACAGCCTGGAGCCGGACACACTGTGCCACGCCCGTGTGGGTGTCGAGCGTCGAGTGGGGTCTGGACGATTGCTGCGTTGACGCCGCAGGGCCACACCGAGCTACCGTCCTGTCCGGTGTGTCTCGAGCGGATGGACGAAAGCGTCGACGGTGTGCTGACCA ]
[+] EMBL BM644330 [ ccgATCCTTCATCTGTTCAAGCGGAACGAACGGGCGGACATATCGGAGGGTGGCGTTTCCAAGACACTTTGCCTGATTGCAGTGCCGTCATCGCTGAACTGTCACGATATTCTCAACTTCATTGCACCGTGCCAGAAGGAGATACAGCACGTGCGCATCTTGCGCGATGGTTCGCCGAACCAGTTCATGGTGCTGCTCGAGTTCCGCTGCGTCGAGGGTGCGATCGAGTTTTTCAAAACGTTCAACGGCGCACCGTACAACAGCCTGGAGCCGGACACACTGTGCCACG CCGTGTGGGTGTCGAGCGTCGAGTGGGGTCTGGACGATTGCTGCG TGACGCCGCAGGGCCACACCGAGCTACCGTCCTGTCCGGTGTGTCTCGAGCGGATGGACGAAAGCGTCGACGGTGTGCTGACCATCCTGTGCAACCACGTGTTCCATGCCGGGTGTCTCAACAAGTGGGGCGACTCGACCTGCCCGGTGTGCCGCTGCGTGCAGACGCCCGAACTGTCCGAACAGTCCGTGTGCATGGAGTGCGAGGGTACGGAGGCACTGTGGATTTGCCTGATCTGCGGGCACATCGGGTGCGGCCGGTATCAGGGCGGTCACGCCGCCTCCCA ]
[+] EMBL BX615643 [ TCTGCGGCCACATCGGGTGCGGCCGGTATCAGGGCGGTCACGCCGCCTCCCACTATCGGACGACAAATCACACGTACGCGCTGCAGCTCGGCACGAACCGCGTGTGGGACTATGCGGGCGATAATTTTGTGCACCGCTTGCTGCAGAGCAAATCGGATGGAAAGCTGGTCGCGACACAATCACCCGGCGGGGACGATGGTGAGGAGAAGATCGACTCGATGCAGCTGGAGTTCACCTACCTGCTGACGTCGCAGCTCGACGCGCAGCGGGATTATTACGAGGAGCGGCTTTCGCGCCTCGAGTCCATCATCTGTGGCGAGCGGCATAAGCTGCAGGAGGACCACGAGCAGGCGAAACAAAAGACGGCACAGTTGGAGGTGAAGCTGCACGCGCTTACGAAAGAGAAGAACAGTCTGGAACGGAAAGTCTCGCAACTAACGTCAAAATTAGGCACGGTGCTGGGTGAATTGGCGGAGGAGAAGCAGTTTGGTAAAACGCTGCAAGCAAATCAAGTTACCTGGCAAACTAAATTCACCACCCTGGAGAAGCAGTGCACGGAGAAGGAGCAGGAAATTGTCGAACTCAAGGAGCAGGTGCGCGATCTCATGTTCTACATGGAGGCACAGAACACGATTGCCGGCTCGGAGCTCAAGAGTGAGCTGGTCGACGGGACGGTAGTGCTTCCGGCGGACGCAGTTG ]
[+] EMBL BX615198 [ tCGACAAATCACACGTACGCGCTGCAGCTCGGCACGAACCGCGTGTGGGACTATGCGGGCGATAATTTTGTGCACCGCTTGCTGCAGAGCAAATCGGATGAAAAGCTGGTCGCGACACAATCACCCGGCGGGGACGATGGTGAGGAGAAGATCGACTCGATGCAGCTGGAGTTCACCTACCTGCTGACGTCGCAGCTCGACGCGCAGCGGGATTATTACGAGGAGCGGCTTTCGCGCCTCGAGTCCATCATCTGTGGCGAGCGGCAGAAGCTGCAGGAGGACCACGAGCAGGCGAAACAAAAGACGGCACAGTTGGAGGTGAAGCTGCACGCGCTTACGAAAGAGAAGAACAGTCTGGAACGGAAAGTCTCGCAACTAACGTCAAAATTAGGCACGGTGCTGGGTGAATTGGCGGAGGAGAAGCAGTTTGGTAAAACGCTGCAAGCAAATCAAGTTACCTGGCAAACTAAATTCACCACCCTGGAGAAGCAGTGCACGGAGAAGGAGCAGGAAATTGTCGAACTCAAGGAGCAGGTGCGCGATCTCATGTTCTACATGGAGGCACAGAACACGATTGCCGGCTCGGAGCTCAAGAGTGAGCTGGTCGACGGGACGGTAGTGCTTCCGGCGGACGCAGTTGCCGCCGCCTCATCCATTTCCGCCAGCGGCGCATTTGCCGCCG]
consensusID : consensus_7574#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[AGGCAGAATTCGGCACGATGGGCGGGCGATAATTTTGTGCACCGCTTGGCTGCAGAGCAAATCGGATGGAAAGCTGGTCGCGACACAATCACCCGGCGGGGACGATGGTGAGGAGAAGATCGACTCGATGCAGCTGGAGTTCACCTACCTGCTTGACGTCGCAGCTCGACGCGCAGCGGGATTATTACGAGGAGCGGGTTTCGGCGCCTCGAGTCCATCATCTGTGGCGAGCGGCAGAAGCTGCAGGAGGACCACGGAGCAGGCGAAACAAAAGACGGGACAGTTGGAGGTGAAGCTGCACGCGCTTACCGAAAGAGAAGAACAGTCTGGAACGGAAAGTCTCGCAACTAACGTCAAGAATTAAGGCACGGTGCTGGGTGAATTGGCGGAGGAGAAGCAGTTTGGTAAAACGCGTGCAAGCAAATCAAGTTACCTGGCGAAACTAGAAGTTCACCANCCTGGAGAAGCAGGTGCACGGAGAAGGAGCAAGGAANATTGTCGANACTCAAGGAGCAGGTGCGCGATCTCATGTTCTACATGGGAGGCACAGAACACGATTGGCCGGCTCGNGAGGCTCAAGAGTGAGCTGGTCGACAGGACGGTAGTGCTTC]
[+] EMBL BX469855 [AGGCAGAATTCGGCACGATGGGCGGGCGATAATTTTGTGCACCGCTTGGCTGCAGAGCAAATCGGATGGAAAGCTGGTCGCGACACAATCACCCGGCGGGGACGATGGTGAGGAGAAGATCGACTCGATGCAGCTGGAGTTCACCTACCTGCTTGACGTCGCAGCTCGACGCGCAGCGGGATTATTACGAGGAGCGGGTTTCGGCGCCTCGAGTCCATCATCTGTGGCGAGCGGCAGAAGCTGCAGGAGGACCACGGAGCAGGCGAAACAAAAGACGGGACAGTTGGAGGTGAAGCTGCACGCGCTTACCGAAAGAGAAGAACAGTCTGGAACGGAAAGTCTCGCAACTAACGTCAAGAATTAAGGCACGGTGCTGGGTGAATTGGCGGAGGAGAAGCAGTTTGGTAAAACGCGTGCAAGCAAATCAAGTTACCTGGCGAAACTAGAAGTTCACCANCCTGGAGAAGCAGGTGCACGGAGAAGGAGCAAGGAANATTGTCGANACTCAAGGAGCAGGTGCGCGATCTCATGTTCTACATGGGAGGCACAGAACACGATTGGCCGGCTCGNGAGGCTCAAGAGTGAGCTGGTCGACAGGACGGTAGTGCTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7574#0 CCGCGGACGCGTGGGTTTCGATTGATTGCATCGCCCTCAGAAGCGGCTGGTGCGGTTTCG 60
consensus_7574#1 ------------------------------------------------------------
consensus_7574#0 AACGAGCATCCTAACAATCCCCGACTGCAGCGCGAGATGAGAGGGCAGCGAAAGCCGAAG 120
consensus_7574#1 ------------------------------------------------------------
consensus_7574#0 AAGATCACCATCGAGAGCTATCGCAATCGGCTGCTGGATGGGGGACCGGCGCCGTCGGAC 180
consensus_7574#1 ------------------------------------------------------------
consensus_7574#0 GAGTACCGTGGCATCCTGCCAAAAAGCTCCCGCGAGCAGACACCGATGGACGAGGTGCCG 240
consensus_7574#1 ------------------------------------------------------------
consensus_7574#0 CCACCGGCGGCCACAGAGATCCTGGGGGAGATAAATTTCTTTTCCGGCAATCCGTTCGTC 300
consensus_7574#1 ------------------------------------------------------------
consensus_7574#0 GAGGTTACGAAAGGCATCCTTCATCTGTTCAAGCGGAACGAACGGGCGGACATATCGGAG 360
consensus_7574#1 ------------------------------------------------------------
consensus_7574#0 GGTGGCGTTTCCAAGACACTTTGCCTGATTGCAGTGCCGTCATCGCTGAACTGTCACGAT 420
consensus_7574#1 ------------------------------------------------------------
consensus_7574#0 ATTCTCAACTTCATTGCACCGTGCCAGAAGGAGATACAGCACGTGCGCATCTTGCGCGAT 480
consensus_7574#1 ------------------------------------------------------------
consensus_7574#0 GGTTCGCCGAACCAGTTCATGGTGCTGCTCGAGTTCCGCTGCGTCGAGGGTGCGATCGAG 540
consensus_7574#1 ------------------------------------------------------------
consensus_7574#0 TTTTTCAAAACGTTCAACGGCGCACCGTACAACAGCCTGGAGCCGGACACACTGTGCCAC 600
consensus_7574#1 ------------------------------------------------------------
consensus_7574#0 GCCGTGTGGGTGTCGAGCGTCGAGTGGGGTCTGGACGATTGCTGCGTGACGCCGCAGGGC 660
consensus_7574#1 ------------------------------------------------------------
consensus_7574#0 CACACCGAGCTACCGTCCTGTCCGGTGTGTCTCGAGCGGATGGACGAAAGCGTCGACGGT 720
consensus_7574#1 ------------------------------------------------------------
consensus_7574#0 GTGCTGACCATCCTGTGCAACCACGTGTTCCATGCCGGGTGTCTCAACAAGTGGGGCGAC 780
consensus_7574#1 ------------------------------------------------------------
consensus_7574#0 TCGACCTGCCCGGTGTGCCGCTGCGTGCAGACGCCCGAACTGTCCGAACAGTCCGTGTGC 840
consensus_7574#1 ------------------------------------------------------------
consensus_7574#0 ATGGAGTGCGAGGGTACGGAGGCACTGTGGATTTGCCTGATCTGCGGGCACATCGGGTGC 900
consensus_7574#1 ------------------------------------------------------------
consensus_7574#0 GGCCGGTATCAGGGCGGTCACGCCGCCTCCCACTATCGGACGACAAATCACACGTACGCG 960
consensus_7574#1 ------------------------------------------------------------
consensus_7574#0 CTGCAGCTCGGCACGAACCGCGTGTGGGACTATG--CGGGCGATAATTTTGTGCACCGCT 1018
consensus_7574#1 --------------AGGCAGAATTCGGCACGATGGGCGGGCGATAATTTTGTGCACCGCT 46
* * * ** ** *** ************************
consensus_7574#0 TG-CTGCAGAGCAAATCGGATGGAAAGCTGGTCGCGACACAATCACCCGGCGGGGACGAT 1077
consensus_7574#1 TGGCTGCAGAGCAAATCGGATGGAAAGCTGGTCGCGACACAATCACCCGGCGGGGACGAT 106
** *********************************************************
consensus_7574#0 GGTGAGGAGAAGATCGACTCGATGCAGCTGGAGTTCACCTACCTGCT-GACGTCGCAGCT 1136
consensus_7574#1 GGTGAGGAGAAGATCGACTCGATGCAGCTGGAGTTCACCTACCTGCTTGACGTCGCAGCT 166
*********************************************** ************
consensus_7574#0 CGACGCGCAGCGGGATTATTACGAGGAGCGGCTTTCG-CGCCTCGAGTCCATCATCTGTG 1195
consensus_7574#1 CGACGCGCAGCGGGATTATTACGAGGAGCGGGTTTCGGCGCCTCGAGTCCATCATCTGTG 226
******************************* ***** **********************
consensus_7574#0 GCGAGCGGCATAAGCTGCAGGAGGACCACG-AGCAGGCGAAACAAAAGACGGCACAGTTG 1254
consensus_7574#1 GCGAGCGGCAGAAGCTGCAGGAGGACCACGGAGCAGGCGAAACAAAAGACGGGACAGTTG 286
********** ******************* ********************* *******
consensus_7574#0 GAGGTGAAGCTGCACGCGCTTAC-GAAAGAGAAGAACAGTCTGGAACGGAAAGTCTCGCA 1313
consensus_7574#1 GAGGTGAAGCTGCACGCGCTTACCGAAAGAGAAGAACAGTCTGGAACGGAAAGTCTCGCA 346
*********************** ************************************
consensus_7574#0 ACTAACGTCAAAATT--AGGCACGGTGCTGGGTGAATTGGCGGAGGAGAAGCAGTTTGGT 1371
consensus_7574#1 ACTAACGTCAAGAATTAAGGCACGGTGCTGGGTGAATTGGCGGAGGAGAAGCAGTTTGGT 406
*********** * * *******************************************
consensus_7574#0 AAAACGC-TGCAAGCAAATCAAGTTACCTGGC-AAACTAAA--TTCACCACCCTGGAGAA 1427
consensus_7574#1 AAAACGCGTGCAAGCAAATCAAGTTACCTGGCGAAACTAGAAGTTCACCANCCTGGAGAA 466
******* ************************ ****** * ******* *********
consensus_7574#0 GCAG-TGCACGGAGAAGGAGCAGG--AAATTGTCGAA-CTCAAGGAGCAGGTGCGCGATC 1483
consensus_7574#1 GCAGGTGCACGGAGAAGGAGCAAGGAANATTGTCGANACTCAAGGAGCAGGTGCGCGATC 526
**** ***************** * * ******** **********************
consensus_7574#0 TCATGTTCTACATGG-AGGCACAGAACACGATTG-CCGGCTCGGA--GCTCAAGAGTGAG 1539
consensus_7574#1 TCATGTTCTACATGGGAGGCACAGAACACGATTGGCCGGCTCGNGAGGCTCAAGAGTGAG 586
*************** ****************** ******** *************
consensus_7574#0 CTGGTCGACGGGACGGTAGTGCTTCCGGCGGACGCAGTTGCCGCCGCCTCATCCATTTCC 1599
consensus_7574#1 CTGGTCGACAGGACGGTAGTGCTTC----------------------------------- 611
********* ***************
consensus_7574#0 GCCAGCGGCGCATTTGCCGCCG 1621
consensus_7574#1 ----------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||