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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7585#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1517 fasta sequence
[CCGGCAGCAGCAGCAGCAACAACAGTGCCGCTGGTGGAAGCACTGGAAATGCTGAGGTTAAAACGGAAACTCCCGACGTCGAGCTGGTCAAACAAAACGTTTAATGTAAACAATTGAGCAAAGCTTACTACACACACACACACACAATGAGTTGCGTTAATAGGTTGCGAATCAAAACGAACTTAACACAGGAGACGAACGTGACACCACCCTCAGCATCTTGTACCCCCTACTCCCACTACTCGTGCTATCCCTACTACTGCTAGTGTGAGCATACCGTATCAGTCCAGATCTTTACATTCATGTGGGAGTAAGGAATGTAAATAGATGCGCAGCAGGAAACTGACTATCGTGAGGGTTTGAACTGGGGCTGGTCGGTTAAATTTGCGTGTCAATTGATTGATGCAACAACAGTTTCAATCGTTTCGAGCCCAGATTGCGCTGCTCTATTTGCAACCTTTCGCACCTAAAACACATTCAACTTGATTAAATCAACTCCAAAAGATAGGCATAGGTGAAGCAGAACAGGAAATTTAAAGCAATTTCACTAGTGTGTGGACATTCGTTAAAATAATACTGATCCTCGGAAAGATCGAGCAGTGCTCGGGATCGATGTGATTTCCGTTTCTTTTACCCTGTTTTCCATTTAAACTATCATTCCCCGTGGTAAAGTTTT--ATTTCGGTTTGGATCGGAAAGCATTGCGCTGTGGTTGTTTTAACAAGTTCGAAATCTCTATCTATTGCCAAAAGAGTTCCTTCCTCTCCCTGTCTGCTCGGCAGAAGCAGTAGCAAATACACTCAGACCAACGAGAGACCTATACGAGTCCTTTTTAATAACTAAACAGCAGTAATTCTAAGCTCGCTGGCTGGGATTGTTGAACGATCTGTGTCAATCGTTCGCTTCCCTCCTATTGCGTTCGAAGTTCGGTTTCTTCGGGCAGCAGGTGATAAAAGCGTGAAGGCTCTTGTTCTCATATCCAGCAATGCCGCAGAGGACTGTGATTTTGTGACGTGGAGGTAGGAGTAATATGTTAATTCAAACACATCAGAGGTTGTGGAGCAGTGGTAGTGATCGGATCAATCCGTGCAGGTGGTAGACTTCGTTGCCTAACGAGGGAAATGTAACAGTCGGTAAATAGAAAAGGTCAAGTAAAAACAGAAATAAGTTTACAGAGAGAAATTTGGTGCGATTATTTAGTTAATTTGCCATATTAGAAACGTTATGTTCCTCCGAAGAACACGGTCTAGGGGGGAGCTGGAGAGGAGGAGAAATTGCTACTGCAAGAAAACAAATATTGTGTAATTACTATAGAAATGGTCAGCGCTAGTATGGATGCGCATGCATCATAATTTTATGAAAAAGCTGTGTGTAATTAAAGCTCACGGGGTGTTGCTCCCAGCGCGGCAGTGTGTAAATTAATTGTGTGTGTGTAAAAAGAAAGTAAAAAAACGCTATTAGCGATGATGATGATGATGTATAGGCGGCGAGAACTTTGTGAATAAGTAGAATGATAACA]
[+] EMBL BM587073 [CCGGCAGCAGCAGCAGCAACAACAGTGCCGCTGGTGGAAGCACTGGAAATGCTGAGGTTAAAACGGAAACTCCCGACGTCGAGCTGGTCAAACAAAACGTTTAATGTAAACAATTGAGCAAAGCTTACTACACACACACACACACAATGAGTTGCGTTAATAGGTTGCGAATCAAAACGAACTTAACACAGGAGACGAACGTGACACCACCCTCAGCATCTTGTACCCCCTACTCCCACTACTCGTGCTATCCCTACTACTGCTAGTGTGAGCATACCGTATCAGTCCAGATCTTTACATTCATGTGGGAGTAAGGAATGTAAATAGATGCGCAGCAGGAAACTGACTATCGTGAGGGTTTGAACTGGGGCTGGTCGGTTAAATTTGCGTGTCAATTGATTGATGCAACAACAGTTTCAATCGTTTCGAGCCCAGATTGCGCTGCTCTATTTGCAACCTTTCGCACCTAAAACACATTCAACTTGATTAA ]
[-] EMBL BM619548 [ AACTTAACACAGGAGACGAACGTGACACCACCCTCAGCATCTTGTACCCCCTACTCCCACTACTCGTGCTATCCCTACTACTACTAGTGTGAGCATACCGTATCAGTCCAGATCTTTACATTCATGTGGGAGTAAGGAATGTAAATAGATGCGCAGCAGGAAACTGACTATCGTGAGGGTTTGAACTGGGGCTAATCGTTTAAATTTGCGTGTCAATTGATTGATGCAACAACAGTTTCAATCGTTTCGAGCCCAGATTGCGCTGCTCTATTTGCAACCTTTCGCACCTAAAACACATTCAACTTGATTAAATCAACTCCAAAAGATAGGCATAGGTGAAGCAGAACAGGAAATTTAAAGCAATTTCACTAGTGTGTGGACATTCGTTAAAATAATACTGATCCTCGGAAAGATCGAGCAGTGCTCGGGATCGATGTGATTTCCGTTTCTTTTACCCTGTTTTCCATTTAAACTATCATTCCCCGTGGTAAAGTTTT ATTTCGG ]
[+] EMBL BM596010 [ ccgCGTGACACCACCCTCAGCATCTTGTACCCCCTACTCCCACTACTCGTGCTATCCCTACTACTGCTAGTGTGAGCATACCGTATCAGTCCAGATCTTTACATTCATGTGGGAGTAAGGAATGTAAATAGATGCGCAGCAGGAAACTGACTATCGTGAGGGTTTGAACTGGGGCTGGTCGGTTAAATTTGCGTGTCAATTGATTGATGCAACAACAGTTTCAATCGTTTCGAGCCCAGATTGCGCTGCTCTATTTGCAACCTTTCGCACCTAAAACACATTCAACTTGATTAAATCAACTCCAAAAGATAGGCATAGGTGAAGCAGAACAGGAAATTTAAAGCAATTTCACTAGTGTGTGGACATTCGTTAAAATGATACTGATCCTCGGAAAGATCGAGCAGTGCTCGGGATCGATGTGATTTCCGTTTCTTTTACCCTGTTTTCCATTTAAACTATCATTCCCCGTGGTAAAGTTTTTAATTTATTTTTGGATCGGAAAGCATTGCGCTGTGGTTGTTTTAACAAGTTCGAAATCTCTATCTATTGCCAAAAGAGTTCCTTCCTCTCCCTGTCTGCTCGGCAGAAGCAGTAGCAAATACACTCAGACCAACGAGAGACCTATACGAGTCCTTTTTAATAACTAAACAG ]
[+] EMBL BX615604 [ CGCTGTGGTTGTTTTAACAAGTTCGAAATCTCTATCTATTGCCAAAAGAGTTCCTTCCTCTCCCTGTCTGCTCGGCAGAAGCAGTAGCAAATACACTCAGACCAACGAGAGACCTATACGAGTCCTTTTTAATAACTAAACAGCAGTAATTCTAAGCTCGCTGGCTGGGATTGTTGAACGATCTGTGTCAATCGTTCGCTTCCCTCCTATTGCGTTCGAAGTTCGGTTTCTTCGGGCAGCAGGTGATAAAAGCGTGAAGGCTCTTGTTCTCATATCCAGCAATGCCGCAGAGGACTGTGATTTTGTGACGTGGAGGTAGGAGTAATATGTTAATTCAAACACATCAGAGGTTGTGGAGCAGTGGTAGTGATCGGATCAATCCGTGCAGGTGGTAGACTTCGTTGCCTAACGAGGGAAATGTAACAGTCGGTAAATAGAAAAGGTCAAGTAAAAACAGAAATAAGTTTACAGAGAGAAATTTGGTGCGATTATTTAGTTAATTTGCCATATTAGAAACGTTATGTTCCTCCGAAGAACACGGTCTAGGGGGGAGCTGGAGAGGAGGAGAAATTGCTACTGCAAGAAAACAAATATTGTGTAATTACTATAGAAATGGTCAGCGCTAGTATGGATGCGCATGCATCA ]
[+] EMBL BX617237 [ TATTTAGTTAATTTGCCATATTAGAAACGTTATGTTCCTCCGAAGAACACGGTCTAGGGGGGAGCTGGAGAGGAGGAGAAATTGCTACTGCAAGAAAACAAATATTGTGTAATTACTATAGAAATGGTCAGCGCTAGTATGGATGCGCATGCATCATAATTTTATGAAAAAGCTGTGTGTAATTAAAGCTCACGGGGTGTTGCTCCCAGCGCGGCAGTGTGTAAATTAATTGTGTGTGTGTAAAAAGAAAGTAAAAAAACGCTATTAGCGATGATGATGATGATGTATAGGCGGCGAGAACTTTGTGAATAAGTAGAATGATAACA]
consensusID : consensus_7585#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[CCGCAACAGCACACCCGCCGGAACAACAAACAGTAGCAGCACCAGCAGCAGCAGCAACAGTGCCGCTGGTGGAAGCACTGGAAATGCTGAGGTGAAAACGGAAACTCCCGACGTCGAGCTGAAACCGCAGCAATTAGTGGGCTCTACGCGTATGCCCGTATTCCTATCCCGCAATGCAAGGCACAGCCGAAAGCACACAGTGGGGAAAATTTCGGTCAACATCGAGGGAAATCCGGCAACGCTGAAGGAGCTGCAGGCGGGCGATGCTGGAGAAGAAAATTCCCCTAACAGCAGCAAAGCCGCGAAAGCTTCTGATGCAAATTCCTCCTCCTCCTCCTCCTTCTCCTCTTCTTCGACGAGTAATGGGTCGAAGCAGCAGCAGTCACATTCGAATGTTGGCGGCGCGGAGGGTGAAAAACAACGTGCCCTAAACGAATCAACCAGTGAAGCTACCGGTGCTACCGGAGGAAAAGTCAAGTCCTCCCAGCAAGAAGAAAGTGGTGCGACCACTGGGAAAGGAGAAACGAATCCTTCATCTTCTCCTGCTGCTGTTGCTGCTGTTTCGGCAACGAGGGATAGCTGTGGAAATGGCGGAAAAGCTGCTAGCAGTGGCAACAATAACAATCTAAACAACGTCAATAACAATAACAGCATTTGCAGCAGCACCAACAAACAGCTA]
[+] EMBL BM635006 [CCGCAACAGCACACCCGCCGGAACAACAAACAGTAGCAGCACCAGCAGCAGCAGCAACAGTGCCGCTGGTGGAAGCACTGGAAATGCTGAGGTGAAAACGGAAACTCCCGACGTCGAGCTGAAACCGCAGCAATTAGTGGGCTCTACGCGTATGCCCGTATTCCTATCCCGCAATGCAAGGCACAGCCGAAAGCACACAGTGGGGAAAATTTCGGTCAACATCGAGGGAAATCCGGCAACGCTGAAGGAGCTGCAGGCGGGCGATGCTGGAGAAGAAAATTCCCCTAACAGCAGCAAAGCCGCGAAAGCTTCTGATGCAAATTCCTCCTCCTCCTCCTCCTTCTCCTCTTCTTCGACGAGTAATGGGTCGAAGCAGCAGCAGTCACATTCGAATGTTGGCGGCGCGGAGGGTGAAAAACAACGTGCCCTAAACGAATCAACCAGTGAAGCTACCGGTGCTACCGGAGGAAAAGTCAAGTCCTCCCAGCAAGAAGAAAGTGGTGCGACCACTGGGAAAGGAGAAACGAATCCTTCATCTTCTCCTGCTGCTGTTGCTGCTGTTTCGGCAACGAGGGATAGCTGTGGAAATGGCGGAAAAGCTGCTAGCAGTGGCAACAATAACAATCTAAACAACGTCAATAACAATAACAGCATTTGCAGCAGCACCAACAAACAGCTA]
consensusID : consensus_7585#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 598 fasta sequence
[GGCAAGAATTCCCCGCAGGTTATNTAATCGGTNTCAGAGCCCAGATNTGCGCTGCATCTACTTTGCAAACCTATTCGCACCTAAAACACATTCGAAACTATGAATTAAATACAACTACCAAAAGATAGGCATAGGTGAAGCAGAACAGGAAATTTAAAGCAATATTCACTAGTTGTGTGGACATATCAGTTTCAAGAACTGATACTGTATCCTTCTGTGAAAGATCNGAAGCAAGTTGCTCTGAGGGNATACGAAATAGTAGATTTCCCCGGTACTANTACTTNTATATACACCCTGTTACTNNNTAACCAATTATTTAANAAACTAATTCATTTACACCCCCCGGTTGGTTCACACCAAGGTCTGCAACCAAAGNATTATACAAAATACGNAGATGGGGGGNATTACAGNCGCACAACAGGACCGATTATGGACCGGACCTTAGACTCGCAGGACTATATGGGTTACGACNNGCAACACACNAANAGGTTTATACCTGAANAANTTCCTACCCTCAAATTACCTTTAAATTATATGGTCCACAACATACTAGTGNAAGGTATACCCCTTATTTCACCCNTNCCTTTACCCCCCTTAG]
[+] EMBL AL694522 [GGCAAGAATTCCCCGCAGGTTATNTAATCGGTNTCAGAGCCCAGATNTGCGCTGCATCTACTTTGCAAACCTATTCGCACCTAAAACACATTCGAAACTATGAATTAAATACAACTACCAAAAGATAGGCATAGGTGAAGCAGAACAGGAAATTTAAAGCAATATTCACTAGTTGTGTGGACATATCAGTTTCAAGAACTGATACTGTATCCTTCTGTGAAAGATCNGAAGCAAGTTGCTCTGAGGGNATACGAAATAGTAGATTTCCCCGGTACTANTACTTNTATATACACCCTGTTACTNNNTAACCAATTATTTAANAAACTAATTCATTTACACCCCCCGGTTGGTTCACACCAAGGTCTGCAACCAAAGNATTATACAAAATACGNAGATGGGGGGNATTACAGNCGCACAACAGGACCGATTATGGACCGGACCTTAGACTCGCAGGACTATATGGGTTACGACNNGCAACACACNAANAGGTTTATACCTGAANAANTTCCTACCCTCAAATTACCTTTAAATTATATGGTCCACAACATACTAGTGNAAGGTATACCCCTTATTTCACCCNTNCCTTTACCCCCCTTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7585#0 CCGGCAGCAGCAGCAGCAACAACAGTGCCGCTGGTGGAAGCACTGGAAATGCTGAGGTTA 60
consensus_7585#2 ------------------------------------------------------------
consensus_7585#1 ------------------------------------------------------------
consensus_7585#0 AAACGGAAACTCCCGACGTCGAGCTGGTCAAACAAAACGTTTAATGTAAACAATTGAGCA 120
consensus_7585#2 ------------------------------------------------------------
consensus_7585#1 ------------------------------------------------------------
consensus_7585#0 AAGCTTACTACACACACACACACACAATGAGTTGCGTTAATAGGTTGCGAATCAAAACGA 180
consensus_7585#2 ------------------------------------------------------------
consensus_7585#1 ------------------------------------------------------------
consensus_7585#0 ACTTAACACAGGAGACGAACGTGACACCACCCTCAGCATCTTGTACCCCCTACTCCCACT 240
consensus_7585#2 ------------------------------------------------------------
consensus_7585#1 ------------------------------------------------------------
consensus_7585#0 ACTCGTGCTATCCCTACTACTGCTAGTGTGAGCATACCGTATCAGTCCAGATCTTTACAT 300
consensus_7585#2 ------------------------------------------------------------
consensus_7585#1 ------------------------------------------------------------
consensus_7585#0 TCATGTGGGAGTAAGGAATGTAAATAGATGCGCAGCAGGAAACTGACTATCGTGAGGGTT 360
consensus_7585#2 ------------------------------------------------------------
consensus_7585#1 -----------------------------CCGCAACAGCACACCCGCCGGAACAACAAAC 31
consensus_7585#0 TGAACTGGGGCTGGTCGGTTAAATTTGCGTGTCAATTGATTGATGCAACAACAGTTTCAA 420
consensus_7585#2 ----------------GGCAAGAATTCCCCGCAGGTTATNTAAT-------CGGTNTCA- 36
consensus_7585#1 AGTAGCAGCACCAG-CAGCAGCAGCAACAGTGCCGCTGGTGGAAGCACTGGAAATGCTGA 90
* * * * * *
consensus_7585#0 TCGTTTCGAGCCCAGATT-GCGCTGC-TCTA-TTTGCAACCTT--TCGCACCTAAAACAC 475
consensus_7585#2 -------GAGCCCAGATNTGCGCTGCATCTACTTTGCAAACCTATTCGCACCTAAAACAC 89
consensus_7585#1 G----GTGAAAACGGAAACTCCCGACGTCGA-GCTGAAACCGC---AGCAATTAGTGGGC 142
** * ** * * * ** * ** ** * *** ** *
consensus_7585#0 ATTCAAC----TTGATTAAAT-CAACT-CCAAAAGATAGGCATAGGTGAAGCAGAACAGG 529
consensus_7585#2 ATTCGAAACTATGAATTAAATACAACTACCAAAAGATAGGCATAGGTGAAGCAGAACAGG 149
consensus_7585#1 TCTACGCG-TATGCCCGTATTCCTATCCCGCAATGCAAGGCACAGCCGAAAGCACACAG- 200
* * * * * * * ** * ***** ** *** ****
consensus_7585#0 AAATTTAAAGCAAT-TTCACTAGT-GTGTGGACAT-TCGTTAAAATAATACTGATCCTCG 586
consensus_7585#2 AAATTTAAAGCAATATTCACTAGTTGTGTGGACATATCAGTTTCA-AGAACTGATACT-- 206
consensus_7585#1 ----TGGGGAAAATTTCGGTCAACATCGAGGGAAATCCGGCAACGCTGAAGGAGCTGC-- 254
* *** * * * ** * * *
consensus_7585#0 GAAAGATCGAGCAGTGCTCGGGATCGATGTGATTTCCGTTTCTTTTACCCTGTTTTCCAT 646
consensus_7585#2 ---GTATC------CTTCTGTGAAAGATCNGAAGCAAGTTGCTCTGAGGGNAT------A 251
consensus_7585#1 ----AGGCGGGCGATGCTGGAGAAGAAAATTCCCCTAACAGCAGCAAAGCCGCGAAAGCT 310
* * ** * * *
consensus_7585#0 TTAAACTATCATTCCCCGTGGTAAAGTTTTATTTCGGTTTGGATCGGAAAGCATTGCGCT 706
consensus_7585#2 CGAAATAGTAGATTTCCCCGGTA--CTANTACTTNTATATACACCCTGT--TACTNNNTA 307
consensus_7585#1 TCTGATGCAAATTCCTCCTCCTCC-TCCTCCTTCTCCTCTTCTTCGACGAGTAATGGGTC 369
* * * * * * * * * *
consensus_7585#0 GTGGTTGTTTTAACAAGTTCGAAATCTCTATCTATTGCCAAAAGAGTTCCTTCCTCTCCC 766
consensus_7585#2 ACCAATTATTTAANAAACT---AATTCATTTACACCCCCCG----GTTGGTTCACACCAA 360
consensus_7585#1 GAAGCAGC----AGCAGTC----ACATTCGAATGTTGGCGGCGCGGAGGGTGAAAAACAA 421
* * * * * * *
consensus_7585#0 TGTCTGCTCGGCAGAAGCAGTAGCAAATACAC---TCAGACCAACGAGAGACCTATACGA 823
consensus_7585#2 GGTCTGCAACCAAAGNATTATACAAAATACGNAGATGGGGGGNATTACAGNCGCACAACA 420
consensus_7585#1 CGTGCCCTAAACGAATCAACCAGTGAAGCTAC----CGGTGCTACCGGAGGAAAAGTCAA 477
** * * ** * * ** * *
consensus_7585#0 GTCCTTTTTAATAACTAAACAGCAGTAATTCTAAGCTCGCTGGCTGGGATTGTTGAACGA 883
consensus_7585#2 GGACCGATTATGGACCGGACCTTAGACTCGCAGGACTATATGGGTTACGACNNGCAACAC 480
consensus_7585#1 GTCCTCCC----AGCAAGAAGAAAGTGGTGCGA---CCACTGG---GAAAGGAGAAACGA 527
* * * * ** * *** ***
consensus_7585#0 TCTGTGTCAATCGTTCGCTTCCCTCCTATTGCGTTCGAAGTTCGGTTTCTTCGGGCAGCA 943
consensus_7585#2 ACNAANAGGTTTATACCTGAANAANTTCCTACCCTCAAATTACCTTTAAATTATATGGTC 540
consensus_7585#1 ATCCT-TCATCTTCTCCTGCTGCTGTTGCTGCTGT-----TTCGGCAACGAGGGATAGCT 581
* * * * * * * *
consensus_7585#0 GGTGATAAAAGCGTGAAGGCTCTTGTTCTCATATCCAGCAATGCCGCAGAGGACTGTGAT 1003
consensus_7585#2 CACAACATACTAGTGNAAGGTATACCCCTTAT-TTCACCCNTNCCTTTACCCCCCTTAG- 598
consensus_7585#1 -GTGGAAATGGCGGAAAAGCTGCTAGCAGTGGCAACAATAACAATCTAAACAACGTCAAT 640
* * * * * ** *
consensus_7585#0 TTTGTGACGTGGAGGTAGGAGTAATATGTTAATTCAAACACATCAGAGGTTGTGGAGCAG 1063
consensus_7585#2 ------------------------------------------------------------
consensus_7585#1 AACAATA-ACAGCATTTGCAGCAGCACCAACAAACAGCTA-------------------- 679
consensus_7585#0 TGGTAGTGATCGGATCAATCCGTGCAGGTGGTAGACTTCGTTGCCTAACGAGGGAAATGT 1123
consensus_7585#2 ------------------------------------------------------------
consensus_7585#1 ------------------------------------------------------------
consensus_7585#0 AACAGTCGGTAAATAGAAAAGGTCAAGTAAAAACAGAAATAAGTTTACAGAGAGAAATTT 1183
consensus_7585#2 ------------------------------------------------------------
consensus_7585#1 ------------------------------------------------------------
consensus_7585#0 GGTGCGATTATTTAGTTAATTTGCCATATTAGAAACGTTATGTTCCTCCGAAGAACACGG 1243
consensus_7585#2 ------------------------------------------------------------
consensus_7585#1 ------------------------------------------------------------
consensus_7585#0 TCTAGGGGGGAGCTGGAGAGGAGGAGAAATTGCTACTGCAAGAAAACAAATATTGTGTAA 1303
consensus_7585#2 ------------------------------------------------------------
consensus_7585#1 ------------------------------------------------------------
consensus_7585#0 TTACTATAGAAATGGTCAGCGCTAGTATGGATGCGCATGCATCATAATTTTATGAAAAAG 1363
consensus_7585#2 ------------------------------------------------------------
consensus_7585#1 ------------------------------------------------------------
consensus_7585#0 CTGTGTGTAATTAAAGCTCACGGGGTGTTGCTCCCAGCGCGGCAGTGTGTAAATTAATTG 1423
consensus_7585#2 ------------------------------------------------------------
consensus_7585#1 ------------------------------------------------------------
consensus_7585#0 TGTGTGTGTAAAAAGAAAGTAAAAAAACGCTATTAGCGATGATGATGATGATGTATAGGC 1483
consensus_7585#2 ------------------------------------------------------------
consensus_7585#1 ------------------------------------------------------------
consensus_7585#0 GGCGAGAACTTTGTGAATAAGTAGAATGATAACA 1517
consensus_7585#2 ----------------------------------
consensus_7585#1 ----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||