These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7586#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1118 fasta sequence [GGATGCAACAAAAAAAAAAAAAAACAAAAACAAAAGAAAACAAAGCTGTACACAAATAAGTTGTAATGAAAACACACACAAAAAACCATGCGAAAAGAGTGTGGTGTGCACTAAATGAAGTTAAAATCGCTTTGTGTCTTTTAAAAATGTACTCCCTTTAGGCGCATGCATAGGAGAGCAGCAGCACGCACACACACAGGGCGGGTGTGTGTGTTGTGCAGTGGAGTGAATTTCGGAGCGTATGTGAATCTGTGGGCACACGCGGGGGAGCGTTTGAGAGAGAGAGAGAGAGACAGCGAGAGAGAAACACAAGTTGCAAATATTTATTACAAAAAGAAGGATCAAAGCAGAGATCATACAACAACAACAACAA--ACAAACAAAAGCACATACAGACAAGCGATGTATAACTATTATTATTATATAGGTAAAGCAAAGTGTAGTAGAGATAAAAGTAGGAAAACACAGTACGTGCACACACAACAAACAAACAAACAACACGCGTACACTTGTGGACTTGGGTGGGTTTAGTAGTATTCTAGTGAAAAACAGAAGCAAACAAAAGTGGAGAAAAAACATACAATCGCACACACACACAGAGAAACACTAAAAAGGAAGAGGCGGGAGAAGGGGAGTGGTAGTGTTAGTAGTACTTTCGCTTTGATTGGTGATGATTGTAGAACTAGGAAAGAAAGAGCAAACAAAAAAAAAAACAATGGAGGAAAATGTAGAAAAGTTCCCCTTTGCAAATTGTAGGATCAATAAAGAAAATGTGTGACTGCGCGTGTGTGTCCGTGAAGCGCAAAAGAATAGAGAAAACAAATCGATAACATAGAGCGTGGGCGACTCCACGTGCAAGAAGAAGGACGATAAATAGTAGGAAGGTGAGATGAGTGAAAACAGACGAATGAATGGGACGAAATGAATGAACGAATGCCACCAAAACTGGCAGGCGAGAATGAATGGCTGTGTGTGTCAGCAGCAGCAGCAGCAGCAAGCACACCCAGATATGGTTAAGTTGGGAAAAGGAGGAGGAGGAGGGAAAAAAAACAGCTGTAATAATTTTACGCCTAACAAGTCCTCTAATATGTGTATAATAGTATACGCGCGGTGCACTAGA] [+] EMBL BX606454 [GGATGCAACAAAAAAAAAAAAAAACAAAAACAAAAGAAAACAAAGCTGTACACAAATAAGTTGTAATGAAAACACACACAAAAAACCATGCGAAAAGAGTGTGGTGTGCACTAAATGAAGTTAAAATCGCTTTGTGTCTTTTAAAAATGTACTCCCTTTAGGCGCATGCATAGGAGAGCAGCAGCACGCACACACACAGGGCGGGTGTGTGTGTTGTGCAGTGGAGTGAATTTCGGAGCGTATGTGAATCTGTGGGCACACGCGGGGGAGCGTTTGAGAGAGAGAGAGAGAGACAGCGAGAGAGAAACACAAGTTGCAAATATTTATTACAAAAAGAAGGATCAAAGCAGAGATCATACAACAACAACAACAACCACAAACAAAAGCACATACAGACAAGCGATGTATAACTATTATTATTATATAGGTAAAGCAAAGTGTAGTAGAGATAAAAGTAGGAAAACACAGTACGTGCAC ] [+] EMBL BM576544 [ ccgGACAGCGAGAGAGAAACGCAAGTTGCAAATATTTATTACAAAAAGAAGGATCAAAGCAGAGATCCTACAACAACAACAACAA ACGAACAAAAGCACATACAGACAACCGGTGTATAACTATTATTATTACATAGGTAAAGCAAAGTGTAGTAGAGATAAAAGTAGGAAAACACAGTGCGTGCACACACAACAAACAAACAAACAACACGCGTACACTTGTGGACTTGGGTGGGTTTAGTAGTATTCTAGTGAAAAACAGAAGCAAACAAAAGTGGAGAAAAAACATACAATCGCACACACACACAGAGAAACACTAAAAAGGAAGAGGCGGGAGAAGGGGAGTGGTAGTGTTAGTAGTACTTTCGCTTTGATTGGTGATGATTGTAGAACTAGGAAAGAAAGAGCAAACAAAAAAAAAAACAATGGAGGAAAATGTAGAAAAGTTCCCCTTTGCAAATTGTAGGATCAATAAAGAAAATGTGTGACTGCGCGTGTGTGTCCGTGAAGCGCAAAAGAATAGAGAAAACAAATCGATAACATAGAGCGTGGGCGACTCCACGTGC ] [+] EMBL BX609279 [ AGAGGCGGGAGAAGGGGAGTGGTAGTGTTAGTAGTACTTTCGCTTTGATTGGTGATGATTGTAGAACTAGGAAAGAAAGAGCAAAC AAAAAAAAAACAATGGAGGAAAATGTAGAAAAGTTCCCCTTTGCAAATTGTAGGATCAATAAAGAAAATGTGTGACTGCGCGTGTGTGTCCGTGAAGCGCAAAAGAATAGAGAAAACAAATCGATAACATAGAGCGTGGGCGACTCCACGTGCAAGAAGAAGGACGATAAATAGTAGGAAGGTGAGATGAGTGAAAACAGACGAATGAATGGGACGAAATGAATGAACGAATGCCACCAAAACTGGCAGGCGAGAATGAATGGCTGTGTGTGTCAGCAGCAGCAGCAGCAGCAAGCACACCCAGATATGGTTAAGTTGGGAAAAGGAGGAGGAGGAGGGAAAAAAAACAGCTGTAATAATTTTACGCCTAACAAGTCCTCTAATATGTGTATAATAGTATACGCGCGGTGCACTAGA] [+] EMBL BX613021 [ CAGCAGCAGCAGCAGCAGCAAGCACACGAAGATATGGTTAAGGGGGGAAAAGGAGGAGGAGGAGGGAAAAAAAACAGCTGTAATAATTTTACGCATAACAAGTCATCTAATATGTGTATAAT ] consensusID : consensus_7586#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence [CCGGTGGTTTTTGCAGAGTTATTTGGAAAATTCTCCTCCACCCCCCTACCTGTCTGTCTCTGTGCCCGTATGCTCTATGTCTTGTGTGTGGAGGGCGCATGATCGTATCGGCATGATTGTCGTGTTTGTATATGTGAAATAGTAAAGTGAGTGCTTGTGCTAAGATGATTAGTTTAAGAACGATAATTTAATTACCCTTGTAGGTTAGTTATAGCGGGAGGGGGGAAATATGAAACGAACGTGCAAGTGTTGTACGTACGATTGACATAGGAGACACAAAAAACAGTATGCAAAAAAACAAAAACAAAAGAAAACAAAGCTGTACACAAATAAGTTGTAATGAAAACACACAAAAAAAAACCACGCGGAAAGAGTGTGGTGTGCACTAAATGAAGTTAAAATCGCTTTGTGTCTTTTAAAAATGTAATCCCTTTAGGCGCATGCATAGGAGAGCAGCACGCACACACACAGGGCGGATGTGTGTGTGTGTGTGTGTGTTGGTGTGTTGTGCATTGGAGTGAATTTCGGAGCGTATGTGAATCTGTGGGCACACGCCGGGGAGCGTTTGATAGAGAGAGAGAG] [+] EMBL BM582231 [CCGGTGGTTTTTGCAGAGTTATTTGGAAAATTCTCCTCCACCCCCCTACCTGTCTGTCTCTGTGCCCGTATGCTCTATGTCTTGTGTGTGGAGGGCGCATGATCGTATCGGCATGATTGTCGTGTTTGTATATGTGAAATAGTAAAGTGAGTGCTTGTGCTAAGATGATTAGTTTAAGAACGATAATTTAATTACCCTTGTAGGTTAGTTATAGCGGGAGGGGGGAAATATGAAACGAACGTGCAAGTGTTGTACGTACGATTGACATAGGAGACACAAAAAACAGTATGCAAAAAAACAAAAACAAAAGAAAACAAAGCTGTACACAAATAAGTTGTAATGAAAACACACAAAAAAAAACCACGCGGAAAGAGTGTGGTGTGCACTAAATGAAGTTAAAATCGCTTTGTGTCTTTTAAAAATGTAATCCCTTTAGGCGCATGCATAGGAGAGCAGCACGCACACACACAGGGCGGATGTGTGTGTGTGTGTGTGTGTTGGTGTGTTGTGCATTGGAGTGAATTTCGGAGCGTATGTGAATCTGTGGGCACACGCCGGGGAGCGTTTGATAGAGAGAGAGAG] consensusID : consensus_7586#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 473 fasta sequence [CCGCAACAACAACAAACAAACAAAAGCACATACAGACAAGCGATGTATAACTATTATTATTATATAGGTAAAGCAAAGTGTAGTA-GAGATAAAAGTAGGAAAACACAGTACGTGCACACACAACAAACAAACAAACAAACAAACAAAAACACGCGTACTCTTGTGGACTTGGGTGGGTTTAGTAGTATTCTAGTGAAAAACAGAAGCAAACAAAAGTGGAGAAAAAAACATACAATCGCACACACACACATAGAGAGAAACACTAAAAAGGAAGAGGAGGGAGAGTGAAGTGGTAGTGTTAGTAGTACTTTCGCTTTGATTGGTGATGATTGTAGAACTAGGAAAGAAAGAGCAAACAAAAAAAAAACAATGGAGGAAAATGTAGAAAAGTTCCCCTTTGCAAATTGTAGGAACAATAGAGAAAATGTGTGACTGCGCGTGTGTGTCCGTGAAGCGCAAAAGAATAGGGAAGC] [+] EMBL BM621490 [CCGCAACAACAACAAACAAACAAAAGCACATACAGACAAGCGATGTATAACTATTATTATTATATAGGTAAAGCAAAGTGTAGTA GAGATAAAAGTAGGAAAACACAGTACGTGCACACACAACAAACAAACAAACAAACAAACAAAAACACGCGTACTCTTGTGGACTTGGGTGGGTTTAGTAGTATTCTAGTGAAAAACAGAAGCAAACAAAAGTGGAGAAAAAAACATACAATCGCACACACACACATAGAGAGAAACACTAAAAAGGAAGAGGAGGGAGAGTGAAGTGGTAGTGTTAGTAGTACTTTCGCTTTGATTGGTGATGATTGTAGAACTAGGAAAGAAAGAGCAAACAAAAAAAAAACAATGGAGGAAAATGTAGAAAAGTTCCCCTTTGCAAATTGTAGGAACAATAGAGAAAATGTGTGACTGCGCGTGTGTGTCCGTGAAGCGCAAAAGAATAGGGAAGC] [+] EMBL BM637437 [CCGCAACAACAACAAACAAACAAAAGCACATACAGACTAGCGATGTATAACTATTATTATTATATAGGTAAAGCAAAGTGTAGTAGGAGATAAAAGTAGGAAAACACAGTACGTGCACACACAACAAACAAACAAACAAACAAACAAAAACACGCGTACTCTTGTGGACTTGGGTGGGTTTAGTAGTATTCTAGTGAAAAACAGAAGCAAACAAAAGTGGAGAAAAAAACATACAATCGCACACACACACATAGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7586#0 GGATGCAACAAAAAAAAAAAAAAACAAAAACAAAAGAAAACAAAGCTGTACACAAATAAG 60 consensus_7586#2 ------------------------------------------------------------ consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 TTGTAATGAAAACACACACAAAAAACCATGCGAAAAGAGTGTGGTGTGCACTAAATGAAG 120 consensus_7586#2 ------------------------------------------------------------ consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 TTAAAATCGCTTTGTGTCTTTTAAAAATGTACTCCCTTTAGGCGCATGCATAGGAGAGCA 180 consensus_7586#2 ------------------------------------------------------------ consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 GCAGCACGCACACACACAGGGCGGGTGTGTGTGTTGTGCAGTGGAGTGAATTTCGGAGCG 240 consensus_7586#2 ------------------------------------------------------------ consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 TATGTGAATCTGTGGGCACACGCGGGGGAGCGTTTGAGAGAGAGAGAGAGAGACAGCGAG 300 consensus_7586#2 ------------------------------------------------------------ consensus_7586#1 ----------------CCGGTGGTTTTTGCAGAGTTATTTGGAAAATTCTCCTCCACCCC 44 consensus_7586#0 AGAGAAACACAAGTTGCAAATATTTATTACAAAAAGAAGGATCAAAGCAGAGATCATACA 360 consensus_7586#2 ----------------------------------------------------------CC 2 consensus_7586#1 CCTACCTGTCTGTCTCTGTGCCCGTATGCTCTATGTCTTGTGTGTGGAGGGCGCATGATC 104 consensus_7586#0 ACAACAACAACAAACAAACAAAAGCACATACAGACAAGCGATGTATA-ACTATTATTATT 419 consensus_7586#2 GCAACAACAACAAACAAACAAAAGCACATACAGACAAGCGATGTATA-ACTATTATTATT 61 consensus_7586#1 GTATCGGCATGATTGTCGTGTTTGTATATGTGAAATAGTAAAGTGAGTGCTTGTGCTAAG 164 * * ** * * * ** * ** * ** ** * ** consensus_7586#0 ATA--TAGGTAAAGCAAAGTGTAGTAGAGATAAAAGTAGGAAAACACAGTACGTGCACAC 477 consensus_7586#2 ATA--TAGGTAAAGCAAAGTGTAGTAGAGATAAAAGTAGGAAAACACAGTACGTGCACAC 119 consensus_7586#1 ATGATTAGTTTAAGAACGATAATTTAATTACCCTTGTAGGTTAGT-TATAGCGGGAGGGG 223 ** *** * *** * * ** * ***** * * ** * consensus_7586#0 ACAACAAACAAACAAACAA-----------CACGCGTACACTTGTGGACTTGGGTGGGTT 526 consensus_7586#2 ACAACAAACAAACAAACAAACAAACAAAAACACGCGTACTCTTGTGGACTTGGGTGGGTT 179 consensus_7586#1 GGAAATATGAAACGAACGTGCAAGTGT---TGTACGTACGATTG---ACATAGGAGACAC 277 ** * **** *** ***** *** ** * ** * consensus_7586#0 TAGTAGTATTCTAGTGAAAAACAGAAGCAAACAAAAGTGGAGAAAAAA-CATACAATCGC 585 consensus_7586#2 TAGTAGTATTCTAGTGAAAAACAGAAGCAAACAAAAGTGGAGAAAAAAACATACAATCGC 239 consensus_7586#1 AAAAAACAGTATGCAAAAAAACAAAAACAAAAGAAAACAAAGCTGTACACAAATAAGTTG 337 * * * * * ******* ** **** *** ** * ** * ** consensus_7586#0 ACACACACACA----GAGAAACACTAAAAAGGAAGAG-GCGGGAGAAGGGGAGTGGTAGT 640 consensus_7586#2 ACACACACACATAGAGAGAAACACTAAAAAGGAAGAG-GAGGGAGA-GTGAAGTGGTAGT 297 consensus_7586#1 TAATGAAAACACACAAAAAAAAACCACGCGGAAAGAGTGTGGTGTGCACTAAATGA-AGT 396 * * *** * *** ** * * ***** * ** * ** *** consensus_7586#0 GTTAGTAGTACTTTCGCTTTGATTGGTG--ATGATTGTAGAACTAGGAAAGAAAGAGCAA 698 consensus_7586#2 GTTAGTAGTACTTTCGCTTTGATTGGTG--ATGATTGTAGAACTAGGAAAGAAAGAGCAA 355 consensus_7586#1 TAAAATCGCTTTGTGTCTTTTAAAAATGTAATCCCTTTAGGCGCATGCATAGGAGAGCAG 456 * * * * * **** * ** ** * *** * * * ****** consensus_7586#0 -----ACAAAAAAAAAAACAATGGAGGAAAATGTAGAAAAGTTCCCCT-TTGCAAATTGT 752 consensus_7586#2 -----ACAAAAAAAAAA-CAATGGAGGAAAATGTAGAAAAGTTCCCCT-TTGCAAATTGT 408 consensus_7586#1 CACGCACACACACAGGGCGGATGTGTGTGTGTGTGTGTGTGTTGGTGTGTTGTGCATTGG 516 *** * * * *** * *** *** * *** **** consensus_7586#0 AG-GATCAATAAAGAAAATGTGTGACTGCGCGTGTGTGTCCGTGAAGCGCAAAAGAATAG 811 consensus_7586#2 AG-GAACAATAGAGAAAATGTGTGACTGCGCGTGTGTGTCCGTGAAGCGCAAAAGAATAG 467 consensus_7586#1 AGTGAATTTCGGAGCGTATGTGAATCTGTGGGCACACG-CCGGGGAGCGTTTGATAGAGA 575 ** ** ** ***** *** * * * *** * **** * * consensus_7586#0 AGAAAACAAATCGATAACATAGAGCGTGGGCGACTCCACGTGCAAGAAGAAGGACGATAA 871 consensus_7586#2 GGAAGC------------------------------------------------------ 473 consensus_7586#1 GAGAGAG----------------------------------------------------- 582 * consensus_7586#0 ATAGTAGGAAGGTGAGATGAGTGAAAACAGACGAATGAATGGGACGAAATGAATGAACGA 931 consensus_7586#2 ------------------------------------------------------------ consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 ATGCCACCAAAACTGGCAGGCGAGAATGAATGGCTGTGTGTGTCAGCAGCAGCAGCAGCA 991 consensus_7586#2 ------------------------------------------------------------ consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 GCAAGCACACCCAGATATGGTTAAGTTGGGAAAAGGAGGAGGAGGAGGGAAAAAAAACAG 1051 consensus_7586#2 ------------------------------------------------------------ consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 CTGTAATAATTTTACGCCTAACAAGTCCTCTAATATGTGTATAATAGTATACGCGCGGTG 1111 consensus_7586#2 ------------------------------------------------------------ consensus_7586#1 ------------------------------------------------------------ consensus_7586#0 CACTAGA 1118 consensus_7586#2 ------- consensus_7586#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||