|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7593#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1236 fasta sequence
[CGGACTGTCAATAGTCAGCAGAAAGCAAAACAAAGTCAGAGTAAACAGATCAAAATGAGCGACCAATCCAGCGAGGCGTTAAGTGGTCCCAATGATACCAGCGCCATACCAGCCACAGCAGTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAGCTGTGCCAAACAGACCGCTGACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCACCGATGCCAACGATAGCCCGAGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAAGGTGCGTACGAAGTGCCATCGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCCGTCGGCGCTACTCGTCTCCCGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACATCAAGGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGCAGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATACGGGATAAAAATATGAACACTCCGCTGCGCTTGGCCTCCAGCACGGAAAGTGTCGAGGTGGTACAGATGCTACTCGATTACGGCACCAACGTGCTGCTGAGGGATTCGAATGGTTTGCTTGCGCTGGACTTTTCAATCGGTAAGCTCCGGCTCTCGGAGCGGCTCATCTCCAAAATGCAAAAGCTTACGCAAAGCGACATACACAAGCATCGTGAAAAAACGGCCGACGTTTGCGAACGAATTTTTGCCGTATTTAAGCAGCAGGTCCGAAACCTTGATCTGCCAAGGCAGGGCCTGGACCAGGAAAAGCTGGAACAGATGCTGAATGATTTTTCCGAACAGCTCGGCAAGGTGCGCCAACGGCATATCGATCTCGATTCCATCGTCGATCAGATCAGCAATCTGAAGGTGAAAAGTGAAATTGATAGCGACGTCAATTCGTTGCTCTCCACCCTGCAGCAGTTCACTCTCTAAACTGTGGGCGGACACTTATTCACGGTGCAGGATCAAACGGTTTCATGCGCACGGATTACATTCCATATCCATCTAATACATGTATAGGCCAAGTTTCCATGTAATGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTATAATAGATTACGTTCGTTTCGGCTATCCCTATTGTACATTCAGGTGCTTTATGTAGAATAAATAATAAGCTAGACTGTAAAAAAAA]
[+] EMBL CNS098I2 [CGGACTGTCAATAGTCAGCAGAAAGCAAAACAAAGTCAGAGTAAACAGATCAAAATGAGCGACCAATCCAGCGAGGCGTTAAGTGGTCCCAATGATACCAGCGCCATACCAGCCACAGCAGTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAGCTGTGCCAAACAGACCGCTGACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCACCGATGCCAACGATAGCCCGAGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAAGGTGCGTACGAAGTGCCATCGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCCGTCGGCGCTACTCGTCTCCCGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACATCAAGGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGCAGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATACGGGATAAAAATATGAACACTCCGCTGCGCTTGGCCTCCAGCACGGAAAGTGTCGAGGTGGTACAGATGCTACTCGATTACGGCACCAACGTGCTGCTGAGGGATTCGAATGGTTTGCTTGCGCTGGACTTTTCAATCGGTAAGCTCCGGCTCTCGGAGCGGCTCATCTCCAAAATGCAAAAGCTTACGCAAAG GACATACACAAGCATCGTGAAAAAACGGCCGACGTTTGCGAACGAATTTTTGCCGTATTTAAGCAGCAGGTCCGAAACCTTGATCTGCCAAGGCAGGGCCTGGACCAGGAAAAGCTGGAACAGATGCTGAATGATTTTTCCGAACAGCTCGGCAAGGTGCGCCAACGGCATATCGATCTCGATTCCATCGTCGATCAGATCAGCAATCTGAAGGTGAAAAGTGAAAT ]
[+] EMBL BM576665 [ ccgacCAGATCAAAATGAGCGACCAATCCAGCGAGGCGTTAAGTGGTCCCAATGATACCAGCGCCATACCAGCCACAGCAGTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAGCTGTGCCAAACAGACCGCTGACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCACCGATGCCAACGATAGCCCGAGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAAGGTGCGTACGAAGTGCCATCGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCCGTCGGCGCTACTCGTCTCCCGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACATCAAGGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGCAGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATACGGGATAAAAATATGAACACTCCGCTGCACTTGGCCTCCAGCACGGAAAGTGTCGAGGTGGTACAGATGCTACTCGATTACGGCACCAACGTGCTGCTGAGGGATTCGA ]
[+] EMBL AGA285267 [ CCAGCGAGGCGTTAAGTGGTCCCAATGATACCAGCGCCATACCAGCCACAGCAGTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAGCTGTGCCAAACAGACCGCTGACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCACCGATGCCAACGATAGCCCGAGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAAGGTGCGTACGAAGTGCCATCGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCCGTCGGCGCTACTCGTCTCCCGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACATCAAGGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGCAGCAGAGGATTCCGAGACATCGTT ]
[+] EMBL BX627095 [ AGGACGATACGCCCGTCGGCGCTACTCGTCTCCCGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACAGCAAGGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGCAGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATACGGGATAAAAATATGAACACTCCGCTGCACTTGGCCTCCAGCACGGAAAGTGTCGAGGTGGTACAGATGCTACTCGATTACGGCACCAACGTGCTGCTGAGGGATTCGAATGGTTTGCTTGCGCTGGACTTTTCAATCGGTAAGCTCCGGCTCTCGGAGCGGCTCATCTCCAAAATGCAAAAGCTTACGCAAAGCGACATACACAAGCATCGTGAAAAAACGGCCGACGTTTGCGAACGAATTTTTGCCGTATTTAAGCAGCAGGTCCGAAACCTTGATCTGCCAANGCAGGGCCTGGACCAGGAAAAGCTGGAACAGATGCTGAATGATTTTTCCGAACAGCTCGGCAAGGNGCGCCAACGGCAAATCGATCTCGATTCCATCGTCGATCAGATCAGCAATCTGAAGGGGAAAAGTGAAATTGATAGCGACGTCAATTCGTTGC ]
[-] EMBL CNS098I3 [ tttTCCCGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACATCAAGGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGCAGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATACGGGATAAAAATATGAACACTTCCCTGCGCTTGGCCTCCAGCACGGAAAGTGTCGAGGTGGTACAGATGCTACTCGATTACGGCACCAACGTGCTGCTGAGGGATTCGAATGGTTTTGTTGCGCTGGACTTTTCAATCGGTAAGCTCCGGCTCTCGGAGCGGCTCATCTCCAAAATGCAAAAGCTTACGCAAAGCGACATACACAAGCATCGTGAAAAAACGGCCGACGTTTGCGAACGAATTTTTGCCGTATTTAAGCAGCAGGTCCGAAACCTTGTTCTGCCAAGGCAGGGCCTGGACCAGGAAAAGCTGGAACAGATGCTGAATGATTTTTCCGAACAGCTCGGCAAGGTGCGCCAACGGCATATCGATCTCGATTCCATCGTCGATCAGATCAGCAATCTGAAGGTGAAAAGTGAAATTGATAGCGACGTCAATTCGTTGCTCTCCACCCTGCAGCAGTTCACTCTCTAAACTGTGGGCGGACACTTATTCACGGTGCAGGATCAAACGGTTTCATGCGCACGGATTACATTCCATATCCATCTAATACATGTATAGGCCAAGTTTCCATGTAATGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTATAATAGATTACGTTCGTTTCGGCTATCCCTATTGTACATTCAGGTGCTTTATGTAGAATAAATAATAAG ]
[-] EMBL AGA283971 [ TCAGCAATCTGAAGGTGAAAAGTGAAATTGATAGCGACGTCAATTCGTTGCTCTCCACCCTGCAGCAGTTCACTCTCTAAACTGTGGGCGGACACTTATTCACGGTGCAGGATCAAACGGTTTCATGCGCACGGATTACATTCCATATCCATCTAATACATGTATAGGCCAAGTTTCCATGTAATGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTATAATAGATTACGTTCGTTTCGGCTATCCCTATTGTACATTCAGGTGCTTTATGTAGAATAAATAATAAGCTAGACTGTAAAAAAAA]
consensusID : consensus_7593#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence
[GCCAGGANCAATCAAATGAGCGACAATCCAGCGAGGCGTTAGTGGTCCCAATGATACCAGCGCCATACCAGCCCCAGCAGTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAGCTGTGCCAAACAGACCGCTGACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCACCGATGCCAACGATAGCCCGAGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAAGGTGCGTACGAAGTGCCATCGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCCGTCGGCGCTACTCGTCTCCCGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACAGCAAGGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGCAGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATACGGGATAAAAATATGAACACACCG]
[+] EMBL AL932965 [GCCAGGANCAATCAAATGAGCGACAATCCAGCGAGGCGTTAGTGGTCCCAATGATACCAGCGCCATACCAGCCCCAGCAGTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAGCTGTGCCAAACAGACCGCTGACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCACCGATGCCAACGATAGCCCGAGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAAGGTGCGTACGAAGTGCCATCGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCCGTCGGCGCTACTCGTCTCCCGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACAGCAAGGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGCAGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATACGGGATAAAAATATGAACACACCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7593#0 CGGACTGTCAATAGTCAGCAGAAAGCAAAACAAAGTCAGAGTAAACAGATCAAAATGAGC 60
consensus_7593#1 ----------------------------------GCCAGGANCAATC-----AAATGAGC 21
* *** ** ********
consensus_7593#0 GACCAATCCAGCGAGGCGTTAAGTGGTCCCAATGATACCAGCGCCATACCAGCCACAGCA 120
consensus_7593#1 GAC-AATCCAGCGAGGCGTTA-GTGGTCCCAATGATACCAGCGCCATACCAGCCCCAGCA 79
*** ***************** ******************************** *****
consensus_7593#0 GTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAGCTGTGCCAAACAGACCGCT 180
consensus_7593#1 GTGGAAGCTGAGAAGGACAGTGAATCAGACTCATCCATTAGCTGTGCCAAACAGACCGCT 139
************************************************************
consensus_7593#0 GACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCACCGATGCCAACGATAGCCCG 240
consensus_7593#1 GACAACAATGATGATGAGTGTCCAAAAACGTTCCCGTTCACCGATGCCAACGATAGCCCG 199
************************************************************
consensus_7593#0 AGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAAGGTGCGTACGAAGTGCCAT 300
consensus_7593#1 AGTGCAGGGGATTTGGCTCACTCTACGCGCTGTAATCTGAAGGTGCGTACGAAGTGCCAT 259
************************************************************
consensus_7593#0 CGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCCGTCGGCGCTACTCGTCTCC 360
consensus_7593#1 CGGCTGCAGAATCGCTCATCCCCATACAGGACGATACGCCCGTCGGCGCTACTCGTCTCC 319
************************************************************
consensus_7593#0 CGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACATCAA 420
consensus_7593#1 CGCTTTCTGGAGGCCGTTTCGCACAATAACACGGAAAAGGTGCAGGAAATGATACAGCAA 379
******************************************************** ***
consensus_7593#0 GGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGC 480
consensus_7593#1 GGTATGTCACCGAACACGTCGGAAAGCTACTTCAACCGGTCCGCGTTGCATATTGCGTGC 439
************************************************************
consensus_7593#0 AGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATA 540
consensus_7593#1 AGCAGAGGATTCCGAGACATCGTTCGCCTCTTGCTGGAGAACGGTGCCAACCCGAACATA 499
************************************************************
consensus_7593#0 CGGGATAAAAATATGAACACTCCGCTGCGCTTGGCCTCCAGCACGGAAAGTGTCGAGGTG 600
consensus_7593#1 CGGGATAAAAATATGAACACACCG------------------------------------ 523
******************** ***
consensus_7593#0 GTACAGATGCTACTCGATTACGGCACCAACGTGCTGCTGAGGGATTCGAATGGTTTGCTT 660
consensus_7593#1 ------------------------------------------------------------
consensus_7593#0 GCGCTGGACTTTTCAATCGGTAAGCTCCGGCTCTCGGAGCGGCTCATCTCCAAAATGCAA 720
consensus_7593#1 ------------------------------------------------------------
consensus_7593#0 AAGCTTACGCAAAGCGACATACACAAGCATCGTGAAAAAACGGCCGACGTTTGCGAACGA 780
consensus_7593#1 ------------------------------------------------------------
consensus_7593#0 ATTTTTGCCGTATTTAAGCAGCAGGTCCGAAACCTTGATCTGCCAAGGCAGGGCCTGGAC 840
consensus_7593#1 ------------------------------------------------------------
consensus_7593#0 CAGGAAAAGCTGGAACAGATGCTGAATGATTTTTCCGAACAGCTCGGCAAGGTGCGCCAA 900
consensus_7593#1 ------------------------------------------------------------
consensus_7593#0 CGGCATATCGATCTCGATTCCATCGTCGATCAGATCAGCAATCTGAAGGTGAAAAGTGAA 960
consensus_7593#1 ------------------------------------------------------------
consensus_7593#0 ATTGATAGCGACGTCAATTCGTTGCTCTCCACCCTGCAGCAGTTCACTCTCTAAACTGTG 1020
consensus_7593#1 ------------------------------------------------------------
consensus_7593#0 GGCGGACACTTATTCACGGTGCAGGATCAAACGGTTTCATGCGCACGGATTACATTCCAT 1080
consensus_7593#1 ------------------------------------------------------------
consensus_7593#0 ATCCATCTAATACATGTATAGGCCAAGTTTCCATGTAATGTGTGTGTGTGTGTGTGTGTG 1140
consensus_7593#1 ------------------------------------------------------------
consensus_7593#0 TGTGTAGGTATAATAGATTACGTTCGTTTCGGCTATCCCTATTGTACATTCAGGTGCTTT 1200
consensus_7593#1 ------------------------------------------------------------
consensus_7593#0 ATGTAGAATAAATAATAAGCTAGACTGTAAAAAAAA 1236
consensus_7593#1 ------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||