These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7599#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 760 fasta sequence [AAATTCCTCCCGATCCCGTTCGTGGCTGTCGATAAAATGTACAGCTAAAGCAAACAGCAACAACAACAACAACGCCCCGCGGCAGGTTGGATGCGAAGCGCAGCACTTCAATCGACACCCGAGCACACCCACAGCCAACACAACGACGACGACGACCAGGCGGACAAAGACCAGGGCCAGAAGGGCGTTCCAGTCCAAGATGGAGTGTGACGATGCGGCCGTCGAGCGCCAGAAGCTGGTGTCGAACGACGAGGAGGACGACCAGAACACCATCACGAACCTGTCCTCGAGCGGGCAGGCCAAATCCGTACAGACGCCCATCTCGCCCGTGCTCAGCAATAAGCTGTTTTCCAGTGGCGAAACGAGCCGAAGTCAAAACTCCACCAGCTACTCGCTCGGGAAGGGAATCGCGACCGATGCGCCGCTGGCCACCAAGGTCAACTACGTGAACGAACGCAAGGCGCAGGATAGCAAGCCAAAGGCGAAGAAAATCCAACGAGAGGTACCCGACGTGCGGCACATGGAGCGGGCCCTGCTCGGGCTGCTGGAAGACTTCCATTCCGGGAAGCTGAAGGCGTTCGGTTCCGGCTGCACGATGGAGCAGATGACCTGCATACGGGAGCAGCAGGAAAGTTTGGCCAAGCTACACTTTGACCTTGGCATGACGGAAGCATTTACCGGTGGCAGCAACAACCCGAACAACGACAACGAGCTGCAAGCGCAAAGCAATATGAAGAAGCTGGTGCAAAAGCTGGAACAG] [+] EMBL AGA284638 [AAATTCCTCCCGATCCCGTTCGTGGCTGTCGATAAAATGTACAGCTAAAGCAAACAGCAACAACAACAACAACGCCCCGCGGCAGGTTGGATGCGAAGCGCAGCACTTCAATCGACACCCGAGCACACCCACAGCCAACACAACGACGACGACGACCAGGCGGACAAAGACCAGGGCCAGAAGGGCGTTCCAGTCCAAGATGGAGTGTGACGATGCGGCCGTCGAGCGCCAGAAGCTGGTGTCGAACGACGAGGAGGACGACCAGAACACCATCACGAACCTGTCCTCGAGCGGGCAGGCCAAATCCGTACAGACGCCCATCTCGCCCGTGCTCAGCAATAAGCTGTTTTCCAGTGGCGAAACGAGCCGAAGTCAAAACTCCACCAGCTACTCGCTCGGGAAGGGAATCGCGACCGATGCGCCG ] [+] EMBL BX609683 [ TGGAGTGTGACGATGCGGCCGTCGAGCGCCAGAAGCTGGTGTCGAACGACGAGGAGGACGACCAGAACACCATCACGAACCTGTCCTCGAGCGGGCAGGCCAAATCCGTACAGACGCCCATCTCGCCCGTGCTCAGCAATAAGCTGTTTTCCAGTGGCGAAACGAGCCGAAGTCAAAACTCCACCAGCTACTCGCTCGGGAAGGGAATCGCGACCGATGCGCCGCTGGCCACCAAGGTCAACTACGTGAACGAACGCAAGGCGCAGGATAGCAAGCCAAAGGCGAAGAAAATCCAACGAGAGGTACCCGACGTGCGGCACATGGAGCGGGCCCTGCTCGGGCTGCTGGAAGACTTCCATTCCGGGAAGCTGAAGGCGTTCGGTTCCGGCTGCACGATGGAGCAGATGACCTGCATACGGGAGCAGCAGGAAAGTTTGGCCAAGCTACACTTTGACCTTGGCATGACGGAAGCATTTACCGGTGGCAGCAACAACCCGAACAACGACAACGAGCTGCAAGCGCAAAGCAATATGAAGAAGCTGGTGCAAAAGCTGGAACAG] [+] EMBL BX612411 [ GGAAGACTTCCATTCCGGGAAGCTGAAGGCGTTCGGTTCCGGCGGCACGATGGAGCAGAAGACCAGCATACGGGAGCAGCAGGAAAGTTGGGCCAAGCTACACTTTGACCTTGGCATGACGGAAG ] consensusID : consensus_7599#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 720 fasta sequence [CCGCCCACGCGTCCGAAAAACTCGAAAGCGAAAGTCGATCCGCGCTATTGTTTTTTTCAGGGGTCGATGCTGTACAAGGGGGGCGGGGGCAGGTATGAGTAATCTTTAAATTCCTCCCGATCCCGTTCATGGCTGTCGATAAAATGTACAGCTAAAGCAAACAGCAACAACAACAACAACGCCCCGCGGCAGGTTGGATGCGAAGCACAGCACTTCAATCGACACCCGAGCACACCCACAGCCAACACAACGACGACGACGACCAGGCGGACAAAGACCAGGGCCAGAAGGGCGTTCCAGTCCAAGATGGAGTGTGACGATGCGGCCGTCGAGCGCCAGAAGCTGGTGTCGAACGACGAGGAGGACGACCAGAACACCATCACGAACCTGTCCTCGAGCGGGCAGGCCAAATCCGTACAGACGCCCATCTCGCCCGTGCTCAGCAATAAGCTGTTTTCCAGTGGCGAAACGAGCCGAAGTCAAAACTCCACCAGCTACTCGCTCGGGAAGGGAATCGCGACCGATGCGCCGCTGGCCACCAAGGTCAACTACGTGAACGAACGCAAGGCGCAGGATAGCAAGCCAAAGGCGAAGAAAATCCAACGAGAGCTCACACCGTACCGGTGGCGTTCCGGTCACAGCCAATACCGCCCCTACTTCCACCATCACCGCTACCACCTGCCTCCACCAGCACCACCACCACCACCACCACAAACATCA] [+] EMBL BM646336 [CCGCCCACGCGTCCGAAAAACTCGAAAGCGAAAGTCGATCCGCGCTATTGTTTTTTTCAGGGGTCGATGCTGTACAAGGGGGGCGGGGGCAGGTATGAGTAATCTTTAAATTCCTCCCGATCCCGTTCATGGCTGTCGATAAAATGTACAGCTAAAGCAAACAGCAACAACAACAACAACGCCCCGCGGCAGGTTGGATGCGAAGCACAGCACTTCAATCGACACCCGAGCACACCCACAGCCAACACAACGACGACGACGACCAGGCGGACAAAGACCAGGGCCAGAAGGGCGTTCCAGTCCAAGATGGAGTGTGACGATGCGGCCGTCGAGCGCCAGAAGCTGGTGTCGAACGACGAGGAGGACGACCAGAACACCATCACGAACCTGTCCTCGAGCGGGCAGGCCAAATCCGTACAGACGCCCATCTCGCCCGTGCTCAGCAATAAGCTGTTTTCCAGTGGCGAAACGAGCCGAAGTCAAAACTCCACCAGCTACTCGCTCGGGAAGGGAATCGCGACCGATGCGCCGCTGGCCACCAAGGTCAACTACGTGAACGAACGCAAGGCGCAGGATAGCAAGCCAAAGGCGAAGAAAATCCAACGAGAGCTCACACCGTACCGGTGGCGTTCCGGTCACAGCCAATACCGCCCCTACTTCCACCATCACCGCTACCACCTGCCTCCACCAGCACCACCACCACCACCACCAC ] [+] EMBL BX603720 [ GACGACGACGACCAGGCGGACAAAGACCAGGGCCAGAAGGGCGTTCCAGTCCAAGATGGAGTGTGACGATGCGGCCGTCGAGCGCCAGAAGCTGGTGTCGAACGACGAGGAGGACGACCAGAACACCATCACGAACCTGTCCTCGAGCGGGCAGGCCAAATCCGTACAGACGCCCATCTCGCCCGTGCTCAGCAATAAGCTGTTTTCCAGTGGCGAAACGAGCCGAAGTCAAAACTCCACCAGCTACTCGCTCGGGAAGGGAATCGCGACCGATGCGCCGCTGGCCACCAAGGTCAACTACGTGAACGAACGCAAGGCGCAGGATAGCAAGCCAAAGGCGAAGAAAATCCAACGAGAGCTCACACCG ACAGGTGGCGTTCCGGTCACAGCCAATACCACCTCCACTTCCACCACCACCGCTACCACCT CCTCCACCAGCACCACCACCACCACCACCACAAACATCA] consensusID : consensus_7599#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 718 fasta sequence [AGCAATAAGCTGTTTCCAGTGGCGAAACGTACCGATGTCTTTAACCTCCACCAGNTTATCTCGCTCGGAAGGGAATCGCGACCGATGCGCCGCTTGCCACCCAAGGTCAAACTTACGTTGATCGTAACGCAAGGGCGCAGGATAGCAAGCCATAAGGCGATAGAGAATCCAACGAGAGGTACCCGACGTCGGCACATGGACGGCCCTGCTCGGGCTGCTGGAAGACTTCCATTCCGGGAAGCTGAAGGCGTTCGGTTCCGGCTGCACGATGGAGCAGATGACCAGCATACGGGAGCAGCAGGTAAAGTTTGGCCAAGCTACACTTTGACCTTGGCATGACGGAAGCATTTACCGGTGGCAGCAACNACCCGNACATACGACAACGAGNCTGCAAGCGCAAAGCAATATGAAGTAAGCTGGTGCAAAAGCTGGAACAGCTGTCCTTCTCGATCGAGAAGCTTCACTCGAGCAATGTGGAAAAGTGACCGCTTGACTGACACATCGTAGCAGGCAGGAGATTAGTCTTAGGATGCGCTGAGCCCAGCCGCGGATTGGGATGGGATGTGATTTTTTTTCTTCTAAAAATCGGTAATAACGTAAAAAGAGTGCCGAGGCGCCATTTTCTTTCCGTGGATCTTTCTACGGTGGTTACATTGAACTTTTTTTTTTGGGGTATTGAAGGGAAT-AAAACGCAAATTTTATGTAAAATAACCTGGGG] [-] EMBL AL693357 [AGCAATAAGCTGTTTCCAGTGGCGAAACGTACCGATGTCTTTAACCTCCACCAGNTTATCTCGCTCGGAAGGGAATCGCGACCGATGCGCCGCTTGCCACCCAAGGTCAAACTTACGTTGATCGTAACGCAAGGGCGCAGGATAGCAAGCCATAAGGCGATAGAGAATCCAACGAGAGGTACCCGACGTCGGCACATGGACGGCCCTGCTCGGGCTGCTGGAAGACTTCCATTCCGGGAAGCTGAAGGCGTTCGGTTCCGGCTGCACGATGGAGCAGATGACCAGCATACGGGAGCAGCAGGTAAAGTTTGGCCAAGCTACACTTTGACCTTGGCATGACGGAAGCATTTACCGGTGGCAGCAACNACCCGNACATACGACAACGAGNCTGCAAGCGCAAAGCAATATGAAGTAAGCTGGTGCAAAAGCTGGAACAGCTGTCCTTCTCGATCGAGAAGCTTCACTCGAGCAATGTGGAAAAGTGACCGCTTGACTGACACATCGTAGCAGGCAGGAGATTAGTCTTAGGATGCGCTGAGCCCAGCCGCGGATTGGGATGGGATGTGATTTTTTTTCTTCTAAAAATCGGTAATAACGTAAAAAGAGTGCCGAGGCGCCATTTTCTTTCCGTGGATCTTTCTACGGTGGTTACATTGAACTTTTTTTTTTGGGGTATTGAAGGGAAT AAAACGCAAATTTTATGTAAAATAACCTGGGG] [-] EMBL AGA281160 [ AGTGACCGCTTGACTGACACA CGTAGCAGGCAGGAGATTAGTCTTAGGATGCGCTGAGCCCAGCCGCGGATTGGGATGGGATGTGATTTTTTTTCTTCTAAAAATCGGTAATAACGTAAAAAGAGTGCCGAGGCGCCATTTTCTTTCCGTGGATCTTTCTACGGTGGTTACATTGAAC TTTTTTTTTGGGGTTTTGAAGGGAATAAAAACGCAAATTTTATGTTAAAAAAaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7599#0 ------------------------------------------------------------ consensus_7599#1 CCGCCCACGCGTCCGAAAAACTCGAAAGCGAAAGTCGATCCGCGCTATTGTTTTTTTCAG 60 consensus_7599#2 -------AGCAATAAGCTGTTTCCAGTGGCGAAACGTACCGATGTCTTTAACCTCCACCA 53 consensus_7599#0 -------------------------------------------------AAATTCCTCCC 11 consensus_7599#1 GGGTCGATGCTGTACAAGGGGGGCGGGGGCAG-GTATGAGTAATC-TTTAAATTCCTCCC 118 consensus_7599#2 GNTTATCTCGCTCGGAAGGGAATCGCGACCGATGCGCCGCTTGCCACCCAAGGTCAAACT 113 ** ** * consensus_7599#0 GATCCCGTTCGTGGCTGTCGATAAAATGTACAGCTAAAGCAAACAGCAACAACAACAACA 71 consensus_7599#1 GATCCCGTTCATGGCTGTCGATAAAATGTACAGCTAAAGCAAACAGCAACAACAACAACA 178 consensus_7599#2 TACGTTGATCGTAAC-GCAAGGGCGCAGGATAGC-AAGCCATAAGGCGATAGAGAATCCA 171 * * ** * * * * * *** ** ** * ** * * * ** consensus_7599#0 ACGCCCCGCGGCAGGT-TGGATGCGAAGCGCAGCACTTCAATCGACACCCGAGCACACCC 130 consensus_7599#1 ACGCCCCGCGGCAGGT-TGGATGCGAAGCACAGCACTTCAATCGACACCCGAGCACACCC 237 consensus_7599#2 ACGAGAGGTACCCGACGTCGGCAC-ATGGACGGCCCTGCTCGGGCTGCTGGAAGACTTCC 230 *** * * * * * * * * * ** ** * * * ** ** ** consensus_7599#0 A--CAGCCAACACAACGACGACGACGACCAGGCGGACAAAGACCAGGGCCAGAAGGGCGT 188 consensus_7599#1 A--CAGCCAACACAACGACGACGACGACCAGGCGGACAAAGACCAGGGCCAGAAGGGCGT 295 consensus_7599#2 ATTCCGGGAAGCTGAAGGCGTTCGGTTCCGGCTGCACGATGGAGCAGATGACCAGCATAC 290 * * * ** * * ** ** * * ** * * * * ** consensus_7599#0 TCCAGTCCAAGATGGAGTGTGACGATGCGGC-CGTCGAGC---GCCAGAAGCTGGTGTCG 244 consensus_7599#1 TCCAGTCCAAGATGGAGTGTGACGATGCGGC-CGTCGAGC---GCCAGAAGCTGGTGTCG 351 consensus_7599#2 GGGAGCAGCAGGTAAAGTTTGGCCAAGCTACACTTTGACCTTGGCATGACGGAAGCATTT 350 ** ** * *** ** * * ** * * * ** * ** ** * * * consensus_7599#0 AACGACGAGGAGGACGACCAGAACA--CCATCACGAACCTGTCCTCG---AGCGG-GCAG 298 consensus_7599#1 AACGACGAGGAGGACGACCAGAACA--CCATCACGAACCTGTCCTCG---AGCGG-GCAG 405 consensus_7599#2 ACCGGTGGCAGCAACNACCCGNACATACGACAACGAGNCTGCAAGCGCAAAGCAATATGA 410 * ** * ** *** * *** * * **** *** ** *** consensus_7599#0 GCCAAATCCGTACAGACGCCCATCTCGCCCGTGCTCAGCAATAAGCTGTTTTCCAGTGGC 358 consensus_7599#1 GCCAAATCCGTACAGACGCCCATCTCGCCCGTGCTCAGCAATAAGCTGTTTTCCAGTGGC 465 consensus_7599#2 AGTAAGCTGGTGCAAAAGCTGGAACAGCTGTCCTTCTCGATCGAGAAGCTT--CACTCGA 468 ** ** ** * ** ** ** * ** * ** ** * * consensus_7599#0 GAAACGAGCCGAAGTCAAAACTCCACCAGCTACTCGCT-CGGGAAGGGAATCGCGACC-- 415 consensus_7599#1 GAAACGAGCCGAAGTCAAAACTCCACCAGCTACTCGCT-CGGGAAGGGAATCGCGACC-- 522 consensus_7599#2 GCAATGTGGAAAAGTGACCGCTTGACTGACACATCGTAGCAGGCAGGAGATTAGTCTTAG 528 * ** * * **** * ** ** * *** * ** *** ** consensus_7599#0 GATGCGCCGCTGGCCACCAAGGTCAACTACGTGAACGAACGCAAGGCGCAGGATAGCAAG 475 consensus_7599#1 GATGCGCCGCTGGCCACCAAGGTCAACTACGTGAACGAACGCAAGGCGCAGGATAGCAAG 582 consensus_7599#2 GATGCGCTGAGCCCAGCCGCGGATTGGGATGGGATGTGATTTTTTTTCTTCTAAAAATCG 588 ******* * * ** ** * * ** * * * * consensus_7599#0 CCAAAGGCGAAGAAAATCCAACGAGAGGTACCCGACGTGCGGCACATGGAGCGGGCCCTG 535 consensus_7599#1 CCAAAGGCGAAGAAAATCCAACGAGAGCT-CACACCGTACCGGTGGCGTTCCGGTCACAG 641 consensus_7599#2 GTAATAACGTAAAAAGAGTGCCGAGGCGCCATTTTCTTTCCGTGGATCTTTCTACGGTGG 648 ** ** * *** **** * * * * * * consensus_7599#0 CTC-GGGCTGCTGGAAGACTTCCATTCCGGGAAGCTGAAGGCGTTCGGTTCCGGCTGCAC 594 consensus_7599#1 CCA-ATACCGCCCCTA--CTTCCACCATCA----CCGCTACCACCTGCCTCCACCAGCAC 694 consensus_7599#2 TTACATTGAACTTTTTTTTTTGGGGTATTGAAGGGAATAAAACGCAAATTTTAT--GTAA 706 * ** * * * consensus_7599#0 GATGGAGCAGATGACCTGCATACGGGAGCAGCAGGAAAGTTTGGCCAAGCTACACTTTGA 654 consensus_7599#1 CACCACCACCACCACC-ACAAACATCA--------------------------------- 720 consensus_7599#2 AATAACCTGGGG------------------------------------------------ 718 * consensus_7599#0 CCTTGGCATGACGGAAGCATTTACCGGTGGCAGCAACAACCCGAACAACGACAACGAGCT 714 consensus_7599#1 ------------------------------------------------------------ consensus_7599#2 ------------------------------------------------------------ consensus_7599#0 GCAAGCGCAAAGCAATATGAAGAAGCTGGTGCAAAAGCTGGAACAG 760 consensus_7599#1 ---------------------------------------------- consensus_7599#2 ---------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||