These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7611#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 2212 fasta sequence [CCGATCATACTGCTCGTCGTCATCTACTATCTGCGCGAGAAGCTGACCGGCCTGGCGGCCCTGTTCGAGGAGGCGGGCAAGTGTATGCTGCAGCTGCCGGGGTTGGCCGGACCGCCGCTGCTCGCCTTCCTCGCACTGTCGATCTTTCTGGCCTTCTGGGTGGTGGTGGTCGTTTGCTTGGCCACCGCCAACTATCCCGGCGTGAAGCCGTTGCTTCCGTTGGCCCAGCTCGAGGACAGTGCTTCGATTGCGAACGATCCAAAGCTGAAGCCGGAGCTGGCGGGGAAGAATGATACCAGCTTCAAGTCATTCAAATTGGTAGAATATCACGACGTGAACGTGCTGCGACACATGCTGTGGATCTACATCATTGGGCTGATCTGGACGAGTGAGTTTATCTTCGCCTGCCAGCAGCTAGCCATTGCCGGTGCCGTCGCGTTCTGGTACTTCCGCAAGCCCACCGATTCGCCCGTCCTGCTCGCGATTGCCAAGCTCGTTAAGTACCATCTTGGGTCCGTTGCAAAGGGTTCGCTCATTATTACGATCTTCAAAATCCCCCGCCTCATCCTTACCTACCTCTACGCGAAATTGAAGCGCCACCAGCAGGAAGGATCGGAATGTGCTAGCTGCTGTTTGCGGTGCTGCATCTGTAGCTTCTGGCTGCTGGAGAAGTTCATCCGCTACCTCAACCACAACGCGTACACCGTGATCGCGATCGAGGGTGTTAACTTCTGTCCCGCTGCAAAGATTGCTTGGAATGCACTCGTCACGAACGCACTGCAGGTCGCCACCATCAATGGTATTGGTGATTTTGTCCTATTCCTTGGCAAGCTGGCGGTGGCATCGATCTGTGGGCTGATTAGCATCCTGCTGCTGCGCGACAATCCCGATCTGCACTTCTACATGGCGCCAGTGATCATTATAACCGTGTTTGCGTTCTTCATCGCTCACATTATACTGTCGCTTTACGAGATGGTGGTTGACACGCTGTTCCTGTGCGTGTGCGAGGATCGCACCATCAACGGCAACAGTGGCCGCTGGAAGGAAAGCAATCTGGCACGGCTGCTGGGCGAAGCGCCGGAAGAGGACGCAGTTGAGGCACCGATGCAGGAGGTACAGCTTACCCCGATCACGAAGCAACCATTCTCCGCCCAATTCCTGCAGGCGGAGATGGAAAATAGTAAGGCTTAAGGATCATTCATCACAAAGTAGTACGCCACCGCGACAAAGGTTTGCGGAAGTGCATGAAGCAAGTAGAGAGTAAGGTTTTTCATTATTTTTTTTTTTTAATATTAACTATAAAGTGTATTTAACAAGTTAAGGGTAAAACTTCCCTTTGACATATTTACATCTTCCGCTACATCGATATTTATCTACATTGGCGTGCCGGCCATTAAGGCTATTTGTATTTGTATCTCACAATCGCCCGCGGGTGGAAAGGAGAAGTTTTGAACGCCCCAACGATAAATCTCATCCACTTAAATAGTATAATTATTTCGGCCATGCACACCCGGTAAATTGCTCACATTCGGTCGTCGTAACCATTTACTTAAATTAATATCTTAACCGTCGTTGTAATAATTTCGCCAAACGGAAACAACCCGATCACCGATCCGGAATGGAGTGGAAACAAAGCATTTACACTACTGACTATCACGATCATTGATGCACGATTCTAGCGCTCAAATACAAAGAACAAAGAAACGAAACAAAAGAAACAAAACAAATAATGCAACAATTTACTCAATAATAATATGTTCTTCTTTGAAAAGATGTACGGTGTGCTTCCGATATTAAGTGTGGCGCAATGGAGAAAGTGCACAAAACATGAACGCTGCCGCCGGGGCATTTGAAACTGTTTGAAGATGTTGCGAATCTATATTTACAAAGTTGTGC---TTGCAAACG--ATGTATATAAATATCGCCTGTTGAATG-TTTTTTTTTTCTTATATACAATAGAAGTTTTGTATGGGCCGTTTTTCTCTTGGCGCCGTCCTTTGTAACAATGAGCGTA-CC-CAACGTCAAGGCAGAGCAGAAAGGTAGAGGGCAAATAGGAAGCGAGGGATTGTGCGAGAATTTTTACTCAAAATATTTGCTACAATTTGTGCTATTTAACTATTGAACTACAAATAAAGTTGCGCCCCAGCCGAATAATGTGAAACGAAACACGACTTGTGGGTGAGAGAGCACGCCCAATTTGGTTTTTAAAATAAAG] [+] EMBL BM621134 [CCGATCATACTGCTCGTCGTCATCTACTATCTGCGCGAGAAGCTGACCGGCCTGGCGGCCCTGTTCGAGGAGGCGGGCAAGTGTATGCTGCAGCTGCCGGGGTTGGCCGGACCGCCGCTGCTCGCCTTCCTCGCACTGTCGATCTTTCTGGCCTTCTGGGTGGTGGTGGTCGTTTGCTTGGCCACCGCCAACTATCCCGGCGTGAAGCCGTTGCTTCCGTTGGCCCAGCTCGAGGACAGTGCTTCGATTGCGAACGATCCAAAGCTGAAGCCGGAGCTGGCGGGGAAGAATGATACCAGCTTCAAGTCATTCAAATTGGTAGAATATCACGACGTGAACGTGCTGCGACACATGCTGTGGATCTACATCATTGGGCTGATCTGGACGAGTGAGTTTATCTTCGCCTGCCAGCAGCTAGCCATTGCCGGTGCCGTCGCGTTCTGGTACTTCCGCAAGCCCACCGATTCGCCCGTCCTGCTCGCGATTGCCAAGCTCGTTAAGTACCATCTTGGGTCCGTTGCAAAGGGTTCGCTCATTATTACGATCTTCAAAATCCCCCGCCTCATCCTTACCTACCTCTACGCGAAATTGAAGCGCCACCAGCAGGAAGGATCGGAATGTGCTAGCTGCTGTTTGCGGTGCTGCATCTGTAGCTTCTGGC ] [+] EMBL BM593092 [ ccgGCCGTTGCTTCCGTTGGCCCAGCTCGAGGACAGTGCTTCGATTGCGAACGATCCAAAGCTGAAGCCGGAGCTGGCGGGGAAGAATGATACCAGCTTCAAGTCTTTCAAATTGGTGGAATATCACGACGTGAACGTGCTGCGACACATGCTGTGGATCTACATCATTGGGCTGATCTGGACGAGTGAGTTTATCTTCGCTTGCCAGCAGCTAGCCATTGCCGGTGCCGTCGCGTTCTGGTACTTCCGCAAGCCCACCGATTCGCCCGTCCTGCTCGCGATTGCCAAGCTTGTTAAGTACCATCTTGGGTCCGTTGCGAAGGGTTCGCTCATTATTACGATCTTCAAAATCCCCCGCCTCATCCTTACCTACCTATACGCGAAATTGAAGCGCCACCAGCAGGAAGGATCGGAATGTGCTAGCTGCTGTTTGCGGTGCTGCATCTGTAGCTTCTGGCTGCTGGAGAAGTTCATCCGCTACCTCAACCACAACGCGTACACCGTGATCGCGATCGAGGGTGTTAACTTCTGTCCCGCTGCAAAGATTGCTTGGAATGCACTCGTCACGAACGCACTGCAGGTCGCCACCATCAATGGTATTGGTGATTTTGTCCTATTCCTTGGCAAGCTGGCGGTGGCATCGATCTGTGGGCTGATTAGCATCCTGCTGCTGCGCGACAATCCCGATCTGCACTTCTACATG ] [+] EMBL BM607401 [ ccgGTAGCTTCTGGCTGCTGGAGAAGTTCATCCGCTACCTCAACCACAACGCGTACACCGTGATCGCGATCGAGGGTGTTAACTTCTGTCCCGCGGCAAAGATTGCTTGGAATGCACTCGTCACGAACGCACTGCAGGTCGCCACCATCAATGGTATTGGTGATTTTGTCCTATTCCTTGGCAAGCTGGCGGTGGCATCGATCTGTGGGCTGATTAGCATCCTGCTGCTGCGCGACAATCCTGATCTGCACTTCTACATGGCGCCAGTGATCATTATAACCGTGTTTGCGTTCTTCATCGCTCACATTATACTGTCGCTTTACGAGATGGTGGTTGACACGCTGTTCCTGTGCGTGTGCGAGGATCGCACCATCAACGGCAACAGTGGCCGCTGGAAGGAAAGCAATCTGGCACGGCTGCTGGGCGAAGCGCCGGAAGAGGACGCAGTTGAGGCACCGATGCAGGAGGTACAGCTTACCCCGATCACGAAGCAACCATTCTCCGCCCAATTCCTGCAGGCGGAGATGGAAAATAGTAAGGCTTAAGGATCATTCATCACAAAGTAGTACGCCACCGCGACAAAGGTTTGCGGAAGTGCATGAAGCAAGTAGAGAGTAAGGTTTTTCATTATTTTTTTTTTTTAATATTAACTATAAAGTGTATTTAACAAGTTAAGGGTAAAACTTCCCTTTGACATATTTACATCTTCCG ] [+] EMBL BX623093 [ aTTTTTTTTATATTAACTATAAAGTGTATTTAAAAAGTTAAGGGTAAAACTTCCCTTTTACATATTTACATCTTCCGCTACATCGATATTTATCTACATTGGCGTGCCGGCCATTAAGGCTATTTGTATTTGTATCTCACAATCGCCCGCGGGTGGAAAGGAGAAGTTTTGAACGCCCCAACGATAAATCTCATCCACTTAAATAGTATAATTATTTCGGCCATGCACACCCGGTAAATTGCTCACATTCGGTCGTCGTAACCATTTACTTAAATTAATATCTTAACCGTCGTTGTAATAATTTCGCCAAACGGAAACAACCCGATCACCGATCCGGAATGGAGTGGAAACAAAGCATTTACACTACTGACTATCACGATCATTGATGCACGATTCTAGCGCTCAAATACAAAGAACAAAGAAACGAAACAAAAGAAACAAAACAAATAATGCAACAATTTACTCAATAATAATATGTTCTTCTTTGAAAAGATGTACGGTGTGCTTCCGATATTAAGTGTGGCGCAATGGAGAAAGTGCACAAAACATGAACGCTGCCGCCGGGGCATTTGAAACTGTTTGAAGATGTTGCGAATCTATATTTACAAAGTTGTGC TTGCAAACG ATGTATATAAATATCGCCTGTTGAATG TTTTTTTTTTCTTATATACAATAGAAGTTTTGTATGGGCCGTTTTTCTCTTGGCGCCGTCCTTTGTAACAATGAGCGTA CC CNACGTCA ] [-] EMBL BM601720 [ tTATATTTACAAAGTTGTGCTTATTGCAAACGATATATATATAAATATCGCCTGTTGAAAGTTTTTTTTTTTCTTATATACAATAGAAGTTTTGTATGGGCCGTTTTTTTCTTGGCGCCGTCCTTTGTAACAATGAGCGTACCC CAACGTCAAGGCAGAGCAGAAAGGTAGAGGGCAAATAGGAAGCGAGGGATTGTGCGAGAATTTTTACTCAAAATATTTGCTACAATTTGTGCTATTTAACTATTGAACTACAAATAAAGTTGCGCCCCAGCCGAATAATGTGA ] [+] EMBL BX609908 [ TACAATAGAAGTTTTGTATGGGCCGTTTTTCTTTTGGCGCCGTCCTTTGTAACAATGAGCGTA CCACAACGTCAAGGCAGAGCAGAAAGGTAGAGGACAAATAGGAAGCGAGGGATTGTGCGAGAATTTCTACTCAAAATATTTGCTACAATTTGTGCTATTTAACTATTGAACTACAAATAAAGTTGCGCACCAGCCGAATAATGTGAAACGAAACACGACTTGTGGGTGAGAGAGCACGCCCAATTTGGTTTTTAAAATAAAG] consensusID : consensus_7611#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [GCAAGAATCGCCCGACGGTGAAACGAGGGCACACCCGGTAAACTTGCTCACATTCGGTCGTCGTAACCATTTACTTAAATTAATATCTTAACCGTCGTTGTAATAATTTCGCCAAACGGAAACAACCCGATCACCGATCCGGAATGGAGTGGAAACAAAGCATTTACACTACTGACTATCACGATCACTGATGCACGATTCTAGCGCTCAAATACAAAGAACAAAGAAACGAAACAAAAGAAACAAAACAAATAATGCAACAATTTACTCAATAATAATATGTTCTTCTTTGAAACAGATGTACGGTGTGCTTCCGATATTAAGTGTGGCGCAAATGGAGAAAGTGCACAAAAACATGAACGCTGCCGCCGGGGCATTTGAAACTGTTTGAAGATGTTGCGAATCTATATTTACAAAGTTGTGCTTATTGCAAACGATGTATATA] [+] EMBL AL697124 [GCAAGAATCGCCCGACGGTGAAACGAGGGCACACCCGGTAAACTTGCTCACATTCGGTCGTCGTAACCATTTACTTAAATTAATATCTTAACCGTCGTTGTAATAATTTCGCCAAACGGAAACAACCCGATCACCGATCCGGAATGGAGTGGAAACAAAGCATTTACACTACTGACTATCACGATCACTGATGCACGATTCTAGCGCTCAAATACAAAGAACAAAGAAACGAAACAAAAGAAACAAAACAAATAATGCAACAATTTACTCAATAATAATATGTTCTTCTTTGAAACAGATGTACGGTGTGCTTCCGATATTAAGTGTGGCGCAAATGGAGAAAGTGCACAAAAACATGAACGCTGCCGCCGGGGCATTTGAAACTGTTTGAAGATGTTGCGAATCTATATTTACAAAGTTGTGCTTATTGCAAACGATGTATATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7611#0 CCGATCATACTGCTCGTCGTCATCTACTATCTGCGCGAGAAGCTGACCGGCCTGGCGGCC 60 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 CTGTTCGAGGAGGCGGGCAAGTGTATGCTGCAGCTGCCGGGGTTGGCCGGACCGCCGCTG 120 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 CTCGCCTTCCTCGCACTGTCGATCTTTCTGGCCTTCTGGGTGGTGGTGGTCGTTTGCTTG 180 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 GCCACCGCCAACTATCCCGGCGTGAAGCCGTTGCTTCCGTTGGCCCAGCTCGAGGACAGT 240 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 GCTTCGATTGCGAACGATCCAAAGCTGAAGCCGGAGCTGGCGGGGAAGAATGATACCAGC 300 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 TTCAAGTCATTCAAATTGGTAGAATATCACGACGTGAACGTGCTGCGACACATGCTGTGG 360 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 ATCTACATCATTGGGCTGATCTGGACGAGTGAGTTTATCTTCGCCTGCCAGCAGCTAGCC 420 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 ATTGCCGGTGCCGTCGCGTTCTGGTACTTCCGCAAGCCCACCGATTCGCCCGTCCTGCTC 480 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 GCGATTGCCAAGCTCGTTAAGTACCATCTTGGGTCCGTTGCAAAGGGTTCGCTCATTATT 540 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 ACGATCTTCAAAATCCCCCGCCTCATCCTTACCTACCTCTACGCGAAATTGAAGCGCCAC 600 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 CAGCAGGAAGGATCGGAATGTGCTAGCTGCTGTTTGCGGTGCTGCATCTGTAGCTTCTGG 660 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 CTGCTGGAGAAGTTCATCCGCTACCTCAACCACAACGCGTACACCGTGATCGCGATCGAG 720 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 GGTGTTAACTTCTGTCCCGCTGCAAAGATTGCTTGGAATGCACTCGTCACGAACGCACTG 780 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 CAGGTCGCCACCATCAATGGTATTGGTGATTTTGTCCTATTCCTTGGCAAGCTGGCGGTG 840 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 GCATCGATCTGTGGGCTGATTAGCATCCTGCTGCTGCGCGACAATCCCGATCTGCACTTC 900 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 TACATGGCGCCAGTGATCATTATAACCGTGTTTGCGTTCTTCATCGCTCACATTATACTG 960 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 TCGCTTTACGAGATGGTGGTTGACACGCTGTTCCTGTGCGTGTGCGAGGATCGCACCATC 1020 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 AACGGCAACAGTGGCCGCTGGAAGGAAAGCAATCTGGCACGGCTGCTGGGCGAAGCGCCG 1080 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 GAAGAGGACGCAGTTGAGGCACCGATGCAGGAGGTACAGCTTACCCCGATCACGAAGCAA 1140 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 CCATTCTCCGCCCAATTCCTGCAGGCGGAGATGGAAAATAGTAAGGCTTAAGGATCATTC 1200 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 ATCACAAAGTAGTACGCCACCGCGACAAAGGTTTGCGGAAGTGCATGAAGCAAGTAGAGA 1260 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 GTAAGGTTTTTCATTATTTTTTTTTTTTAATATTAACTATAAAGTGTATTTAACAAGTTA 1320 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 AGGGTAAAACTTCCCTTTGACATATTTACATCTTCCGCTACATCGATATTTATCTACATT 1380 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 GGCGTGCCGGCCATTAAGGCTATTTGTATTTGTATCTCACAATCGCCCGCGGGTGGAAAG 1440 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 GAGAAGTTTTGAACGCCCCAACGATAAATCTCATCCACTTAAATAGTATAATTATTTCGG 1500 consensus_7611#1 ------------------------------------GCAAGAATCGCCCGACGGTGAAAC 24 * *** * * * consensus_7611#0 CCATGCACACCCGGTAAA-TTGCTCACATTCGGTCGTCGTAACCATTTACTTAAATTAAT 1559 consensus_7611#1 GAGGGCACACCCGGTAAACTTGCTCACATTCGGTCGTCGTAACCATTTACTTAAATTAAT 84 ************** ***************************************** consensus_7611#0 ATCTTAACCGTCGTTGTAATAATTTCGCCAAACGGAAACAACCCGATCACCGATCCGGAA 1619 consensus_7611#1 ATCTTAACCGTCGTTGTAATAATTTCGCCAAACGGAAACAACCCGATCACCGATCCGGAA 144 ************************************************************ consensus_7611#0 TGGAGTGGAAACAAAGCATTTACACTACTGACTATCACGATCATTGATGCACGATTCTAG 1679 consensus_7611#1 TGGAGTGGAAACAAAGCATTTACACTACTGACTATCACGATCACTGATGCACGATTCTAG 204 ******************************************* **************** consensus_7611#0 CGCTCAAATACAAAGAACAAAGAAACGAAACAAAAGAAACAAAACAAATAATGCAACAAT 1739 consensus_7611#1 CGCTCAAATACAAAGAACAAAGAAACGAAACAAAAGAAACAAAACAAATAATGCAACAAT 264 ************************************************************ consensus_7611#0 TTACTCAATAATAATATGTTCTTCTTTGAAA-AGATGTACGGTGTGCTTCCGATATTAAG 1798 consensus_7611#1 TTACTCAATAATAATATGTTCTTCTTTGAAACAGATGTACGGTGTGCTTCCGATATTAAG 324 ******************************* **************************** consensus_7611#0 TGTGGCGCAA-TGGAGAAAGTGCACAAAA-CATGAACGCTGCCGCCGGGGCATTTGAAAC 1856 consensus_7611#1 TGTGGCGCAAATGGAGAAAGTGCACAAAAACATGAACGCTGCCGCCGGGGCATTTGAAAC 384 ********** ****************** ****************************** consensus_7611#0 TGTTTGAAGATGTTGCGAATCTATATTTACAAAGTTGTGCTT---GCAAACGATGTATAT 1913 consensus_7611#1 TGTTTGAAGATGTTGCGAATCTATATTTACAAAGTTGTGCTTATTGCAAACGATGTATAT 444 ****************************************** *************** consensus_7611#0 AAATATCGCCTGTTGAATGTTTTTTTTTTCTTATATACAATAGAAGTTTTGTATGGGCCG 1973 consensus_7611#1 A----------------------------------------------------------- 445 * consensus_7611#0 TTTTTCTCTTGGCGCCGTCCTTTGTAACAATGAGCGTACCCAACGTCAAGGCAGAGCAGA 2033 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 AAGGTAGAGGGCAAATAGGAAGCGAGGGATTGTGCGAGAATTTTTACTCAAAATATTTGC 2093 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 TACAATTTGTGCTATTTAACTATTGAACTACAAATAAAGTTGCGCCCCAGCCGAATAATG 2153 consensus_7611#1 ------------------------------------------------------------ consensus_7611#0 TGAAACGAAACACGACTTGTGGGTGAGAGAGCACGCCCAATTTGGTTTTTAAAATAAAG 2212 consensus_7611#1 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||