These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7619#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1348 fasta sequence [ACATTTTTTTAATTCTCGGACCGTTTTTCATCATATTG-GCGCGTACAGCGTGTATCGATAAATTCTTAAAATATTCCCATATAAGTACTCGCAAGTACCTGTTCTCGGTAAAAATTAGGCATAGTTCATTCCCCCCTCCCCTCCACCCTTCCTCAACCGTCCGTTGAACCGAA-GGACTGGCGTGGTCGAGTATGGAGCGCATGTTCCTGATGACACTCTCGTAGTGCGCCACCCGCTGCTCGAGCTTGCCGAGGGTGCCGAGAAAGTGCGCCTTCGGCATCTGCACGTACTCCTCGCCTTTGAAGATGAATTCGCTGATTTTGTCGTCCCGCTCCGTCGCCTGCTGGCCCCCTGCGCTGCTCTCCGCTGGCTCATCTTCCCGCCCTTCAACGGTTTCGTCGTGCGAGTTGGTGGATGACGAAACCGGAGATTTCACACTCTTGGAGGCGTTCGGCACCTCGCCGGAAGCTTCATCCGGCTTGCCCCCGTCCTCGTGGTCGTTGTCGACGATCGTCACTTCCGGGCCCGTTTCCGACTGTTTGTGCATGATGTTGCGGAATTGGATCGGCACCAGGCGTATCGTTTTGCCGTTCAGCACCACCCTCTTGCCGGCTGCCTCCCGGTGGTTGGGTGTGATCGCACCGGCAGCAGCGGCGTTCCGCACCTTCACCTTCATTTCCGCTATCTTCGAGGCGACCAGCTTCTGTTTGTGGCTGCTGCCGGCCGACGAAACAGCTTCCGACTTCGGTTCCTTCTGGGCGACTTTCTTCGAATCCGGCACCTCCTCCCCAACGCTTAGCGTATCCTGCAGCTCCTCGGAAGTGCTGGAGCGAACGACGGTCACCGTTGGGGAACTTAACGCTTCCGTGTCCGTCTCACTGGTCTGCTCCATGTCCGTCGACTCGGCGCCCCCGTTGTCGTCAAGCGGCCGCAAAGGTGCGACTTTCGCGAGCGTCCCGTCCGACTCCATCTCGTACACTTCGACCGTTCCCTCCGACGCGTCGCAATCCGTCACAATCGACTGGTCGAACGGGTAGGGCACCGCATTACCCAGCAGCAGCGTCCGTCGCTGGCTGCGGCACATATAGATGTCGGCAAAGTGGCGCTCGCACAGATACCGGTACCGCTTGTTCTCGAGCAGCTCGTGCGGCACGCCCGCAAACTTCATCCACGTCTCGTAGCGGTCGAACGGTTTCGGGAAGCCGAAGAATGTGATATCCGGAGTGGACACCGAGTTGTTGTTGCACCGGAAGTACGCACAGTGTTTGCGGTTCACGTTCGCCCGGTACGAGTGCATCTTGGGGTGTGTGTGGCCCCCCAATGCGTCCGTGCTGGTGCGTCGGTATGT] [+] EMBL AGA284910 [ACATTTTTTTAATTCTCGGACCGTTTTTCATCATATTG GCGCGTACAGCGTGTATCGATAAATTCTTAAAATATTCCCATATAAGTACTCGCAAGTACCTGTTCTCGGTAAAAATTAGGCATAGTTCATTCCCCCCTCCCCTCCACCCTTCCTCAACCGTCCGTTGAACCGAAGGGACTGGCGTGGTCGAGTATGGATCGCATGTTCCTGATGACACTCTCGTAGTGCGCCAC ] [+] EMBL CNS0935O [ CATTTTTTTAATTCTCGGACCGTTTTTCATCATATTGCGCGCGTACAGCGTGTATCGATAAATTCTTAAAATATTCCCATATAAGTACTCGCAAGTACCTGTTCTCGGTAAAAATTAGGCATAGTTCATTCCCCCCTCCCCTCCACCCTTCCTCAACCGTCCGTTGAACCGAA GGACTGGCGTGGTCGAGTATGGAGCGCATGTTCCTGATGACACTCTCGTAGTGCGCCACCCGCTGCTCGAGCTTGCCGAGGGTGCCGAGAAAGTGCGCCTTCGGCATCTGCACGTACTCCTCGCCTTTGAAGATGAATTCGCTGATTTTGTCGTCCCGCTCCGTCGCCTGCTGGCCCCCTGCGCTGCTCTCCGCTGGCTCATCTTCCCGCCCTTCAACGGTTTCGTCGTGCGAGTTGGTGGATGACGAAACCGGAGATTTCACACTCTTGGAGGCGTTCGGCACCTCGCCGGAAGCTTCATCCGGCTTGCCCCCGTCCTCGTGGTCGTTGTCGACGATCGTCACTTCCGGGCCCGTTTCCGACTGTTTGTGCATGATGTTGCGGAATTGGATCGGCACCAGGCGTATCGTTTTGCCGTTCAGCACCACCCTCTTGCCGGCTGCCTCCCGGTGGTTGGGTGTGATCGCACCGGCAGCAGCGGCGTTCCGCACCTTCACCTTCATTTCCGCTATCTTCGAGGCGACCAGCTTCTGTTTGTGGCTGCTGCCGGCCGACGAAACAGCTTCCGACTTCGGTTCCTTCTGGGCGACTTTCTTCGAATCCG ] [+] EMBL CNS09IE0 [ CCCATATAAGTTCTCGCAAGTTCCTGTTCTCGGTAAAAATTAGGCATAGTTCATTCCCCCCTCCCCTCCACCCTTCCTCAACCGTCCGTTGAACCGAA GGACTGGCGTGGTCGATTATTGAGCtc ] [-] EMBL AGA283620 [ CATGATGTTGCGGAATTGAATCGGCACCAGGCGTATCGTTTTGCCGTTCAGCACCACCCTCTTGCCGGCTGCCTCCCGGTGGTTGGGTGTGATCGCACCGGCAGCAGCGGCGTTCCGCACCTTCACCTTCATTTCCGCTATCTTCGAGGCGACCAGCTTCTGTTTGTGGCTGCTGCCGGCCGACGAAACAGCTTCCGACTTCGGTTCCTTCTGGGCGACTTTCTTCGAATCCGGCACCTCCTCCCCAACGCTTAGCGTATCCTGCAGCTCCTCGGAAGTGCTGGAGCGAACGACGGTCACCGTTGGGGAACTTAACGCTTCCGTGTCCGTCTCACTGGTCTGCTCCATGTCCGTCGACTCGGCGCCCCCGT ] [-] EMBL CNS0935N [ GTGGTTGCGTGTGATCGCACCGGCAGCAGC GCGTTCCGCACCTTCACCTTCATTTCCGCTATCTTCGAGGCGACCAGCTTCTGTTTGTGGCTGCTGCCGGCCGACGAAACAGCTTCCGACTTCGGTTCCTTCTGGGCGACTTTCTTCGAATCCGGCACCTCCTCCCCAACGCTTAGCGTATCCTGCAGCTCCTCGGAAGTGCTGGAGCGAACGACGGTCACCGTTGGGGAACTTAACGCTTCCGTGTCCGTCTCACTGGTCTGCTCCATGTCCGTCGACTCGGCGCCCCCGTTGTCGTCAAGCGGCCGCAAAGGTGCGACTTTCGCGAGCGTCCCGTCCGACTCCATCTCGTACACTTCGACCGTTCCCTCCGACGCGTCGCAATCCGTCACAATCGACTGGTCGAACGGGTAGGGCACCGCATTACCCAGCAGCAGCGTCCGTCGCTGGCTGCGGCACATATAGATGTCGGCAAAGTGGCGCTCGCACAGATACCGGTACCGCTTGTTCTCGAGCAGCTCGTGCGGCACGCCCGCAAACTTCATCCACGTCTCGTAGCGGTCGAACGGTTTCGGGAAGCCGAAGAATGTGATATCCGGAGTGGACACCGAGTTGTTGTTGCACCGGAAGTACGCACAGTGTTTGCGGTTCACGTTCGCCCGGTACGAGTGCATCTTGGGGTGTGTGTGGCCCCCCAATGCGTCCGTGCTGGTGCGTCGGTATGT] [-] EMBL CNS09IDZ [ CGAAGAATGTAATATCCGGAGTGGACACCGAGTTGATGTTGCACCGGAAGTACGCACAGTGTTTGCGGTTCACGTTCGCCCGGTACGAGTGCATCTTGGGGTGTGT ] consensusID : consensus_7619#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 470 fasta sequence [GTATCCTGCAGCTCCTCAGAAGTGCTAGAGCGAACGACGGTCACCGTTGGGGAGCTTAACGCTTCCGTGTCCGTCTCACTGGTCTGCTCCATGTCCGTCGACTCGGTGCCCTCGTTGTCGTCAAGCGGCCGCAAAGGTGCGACTTTCGCGAGCGTCCCATCCGACTCCATCTCGTACACTTCGACCGTTCCCTCCGACGCGTCGCAATCCGTCACAATCGACTGGTCGAACGGGTAGGGCACCGCATTACCCAGCAGCAGCGTCCGTCGCTGGCTGCGGCACATATAGATGTCGGCAAAGTGGCGCTCGCACAGATACCGGTACCGCTTGTTCTCGAGCAGCTCGTGCGGCACGCCCGCAAACTTCATCCACGTCTCGTAGCGGTCGAACGGTTTCGGGAAGCCGAAGAATGTGATATCCGGAGTGGACACCGAGTTGTTGTTGCACCGGAAGTANTGCCTCGTGCGGAT] [-] EMBL BX466256 [GTATCCTGCAGCTCCTCAGAAGTGCTAGAGCGAACGACGGTCACCGTTGGGGAGCTTAACGCTTCCGTGTCCGTCTCACTGGTCTGCTCCATGTCCGTCGACTCGGTGCCCTCGTTGTCGTCAAGCGGCCGCAAAGGTGCGACTTTCGCGAGCGTCCCATCCGACTCCATCTCGTACACTTCGACCGTTCCCTCCGACGCGTCGCAATCCGTCACAATCGACTGGTCGAACGGGTAGGGCACCGCATTACCCAGCAGCAGCGTCCGTCGCTGGCTGCGGCACATATAGATGTCGGCAAAGTGGCGCTCGCACAGATACCGGTACCGCTTGTTCTCGAGCAGCTCGTGCGGCACGCCCGCAAACTTCATCCACGTCTCGTAGCGGTCGAACGGTTTCGGGAAGCCGAAGAATGTGATATCCGGAGTGGACACCGAGTTGTTGTTGCACCGGAAGTANTGCCTCGTGCGGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7619#0 ACATTTTTTTAATTCTCGGACCGTTTTTCATCATATTGGCGCGTACAGCGTGTATCGATA 60 consensus_7619#1 ------------------------------------------------------------ consensus_7619#0 AATTCTTAAAATATTCCCATATAAGTACTCGCAAGTACCTGTTCTCGGTAAAAATTAGGC 120 consensus_7619#1 ------------------------------------------------------------ consensus_7619#0 ATAGTTCATTCCCCCCTCCCCTCCACCCTTCCTCAACCGTCCGTTGAACCGAAGGACTGG 180 consensus_7619#1 ------------------------------------------------------------ consensus_7619#0 CGTGGTCGAGTATGGAGCGCATGTTCCTGATGACACTCTCGTAGTGCGCCACCCGCTGCT 240 consensus_7619#1 ------------------------------------------------------------ consensus_7619#0 CGAGCTTGCCGAGGGTGCCGAGAAAGTGCGCCTTCGGCATCTGCACGTACTCCTCGCCTT 300 consensus_7619#1 ------------------------------------------------------------ consensus_7619#0 TGAAGATGAATTCGCTGATTTTGTCGTCCCGCTCCGTCGCCTGCTGGCCCCCTGCGCTGC 360 consensus_7619#1 ------------------------------------------------------------ consensus_7619#0 TCTCCGCTGGCTCATCTTCCCGCCCTTCAACGGTTTCGTCGTGCGAGTTGGTGGATGACG 420 consensus_7619#1 ------------------------------------------------------------ consensus_7619#0 AAACCGGAGATTTCACACTCTTGGAGGCGTTCGGCACCTCGCCGGAAGCTTCATCCGGCT 480 consensus_7619#1 ------------------------------------------------------------ consensus_7619#0 TGCCCCCGTCCTCGTGGTCGTTGTCGACGATCGTCACTTCCGGGCCCGTTTCCGACTGTT 540 consensus_7619#1 ------------------------------------------------------------ consensus_7619#0 TGTGCATGATGTTGCGGAATTGGATCGGCACCAGGCGTATCGTTTTGCCGTTCAGCACCA 600 consensus_7619#1 ------------------------------------------------------------ consensus_7619#0 CCCTCTTGCCGGCTGCCTCCCGGTGGTTGGGTGTGATCGCACCGGCAGCAGCGGCGTTCC 660 consensus_7619#1 ------------------------------------------------------------ consensus_7619#0 GCACCTTCACCTTCATTTCCGCTATCTTCGAGGCGACCAGCTTCTGTTTGTGGCTGCTGC 720 consensus_7619#1 ------------------------------------------------------------ consensus_7619#0 CGGCCGACGAAACAGCTTCCGACTTCGGTTCCTTCTGGGCGACTTTCTTCGAATCCGGCA 780 consensus_7619#1 ------------------------------------------------------------ consensus_7619#0 CCTCCTCCCCAACGCTTAGCGTATCCTGCAGCTCCTCGGAAGTGCTGGAGCGAACGACGG 840 consensus_7619#1 --------------------GTATCCTGCAGCTCCTCAGAAGTGCTAGAGCGAACGACGG 40 ***************** ******** ************* consensus_7619#0 TCACCGTTGGGGAACTTAACGCTTCCGTGTCCGTCTCACTGGTCTGCTCCATGTCCGTCG 900 consensus_7619#1 TCACCGTTGGGGAGCTTAACGCTTCCGTGTCCGTCTCACTGGTCTGCTCCATGTCCGTCG 100 ************* ********************************************** consensus_7619#0 ACTCGGCGCCCCCGTTGTCGTCAAGCGGCCGCAAAGGTGCGACTTTCGCGAGCGTCCCGT 960 consensus_7619#1 ACTCGGTGCCCTCGTTGTCGTCAAGCGGCCGCAAAGGTGCGACTTTCGCGAGCGTCCCAT 160 ****** **** ********************************************** * consensus_7619#0 CCGACTCCATCTCGTACACTTCGACCGTTCCCTCCGACGCGTCGCAATCCGTCACAATCG 1020 consensus_7619#1 CCGACTCCATCTCGTACACTTCGACCGTTCCCTCCGACGCGTCGCAATCCGTCACAATCG 220 ************************************************************ consensus_7619#0 ACTGGTCGAACGGGTAGGGCACCGCATTACCCAGCAGCAGCGTCCGTCGCTGGCTGCGGC 1080 consensus_7619#1 ACTGGTCGAACGGGTAGGGCACCGCATTACCCAGCAGCAGCGTCCGTCGCTGGCTGCGGC 280 ************************************************************ consensus_7619#0 ACATATAGATGTCGGCAAAGTGGCGCTCGCACAGATACCGGTACCGCTTGTTCTCGAGCA 1140 consensus_7619#1 ACATATAGATGTCGGCAAAGTGGCGCTCGCACAGATACCGGTACCGCTTGTTCTCGAGCA 340 ************************************************************ consensus_7619#0 GCTCGTGCGGCACGCCCGCAAACTTCATCCACGTCTCGTAGCGGTCGAACGGTTTCGGGA 1200 consensus_7619#1 GCTCGTGCGGCACGCCCGCAAACTTCATCCACGTCTCGTAGCGGTCGAACGGTTTCGGGA 400 ************************************************************ consensus_7619#0 AGCCGAAGAATGTGATATCCGGAGTGGACACCGAGTTGTTGTTGCACCGGAAGTACGCAC 1260 consensus_7619#1 AGCCGAAGAATGTGATATCCGGAGTGGACACCGAGTTGTTGTTGCACCGGAAGTAN---T 457 ******************************************************* consensus_7619#0 AGTGTTTGCGGTTCACGTTCGCCCGGTACGAGTGCATCTTGGGGTGTGTGTGGCCCCCCA 1320 consensus_7619#1 GCCTCGTGCGGAT----------------------------------------------- 470 ***** * consensus_7619#0 ATGCGTCCGTGCTGGTGCGTCGGTATGT 1348 consensus_7619#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||