These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7623#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1915 fasta sequence [CCGGTCCCGCTGAACAGACACGAAGATGACGGCGATGCCATGGGCGATCGACGATTCCAGCGCAATCATCATCGCCGAAACGATGATGCAGATGACGAAAGGCCACAGCCCATCCTGTACTCCCCGGAACCGGAAGAGGAGCCGGACGAAATGGGTGGCAATGACCAGTATGCTCGGGAGGATAATACAAACTACCACCAAGGGGACGATAATGGTGGCCAAGATCATCCTGACCGTGGAGTGGAAGCAACCGATGAGCTGATGAATCAATGTCAGCCACAGGAAGATAGCTCGCAATTCGGCGGAGCAACGGCGGACGATCGTTTCGAAGAGCAGCGAGAACAGGAGCAAGCAGCTCCTTCGTCTGCCATGGAACAAGGTGTACGGGATGAGGATAATGACTACTCCCATCCGGAAAAGCAACAGGATCTGCCCGAGGACGATCGCAATGAGACTGCAGCAGCATCTTCATCTTCCCCGACGATGCCCACCCCCTGCCAGGAACAAAACAATGAGCCTAGTGTTCAATCGAATGACACCGCCGAAGAGGAACCAGCTTCTGGCGAACCTGCTGCATGTTGAAAAGGCAGCAGTTACATCCTAAAACATGTGTAAAGGGCGTCGAT--ATATA--TAT-ATATTTAGTGTTGCATACAGTTAGTGCAAAATTGCAAAAGGAAGAAAGAAGAAAAAACAAGATTAGAATGATACTATACGACAGTGGGGGAGTGCATCTTTGAAAAGGCACACCAGTGGGAGGAATAGTTAAGCCAAACAAATTATTTTAAACGTAAGCAAAGAGCTAAGCAATCCAACTTTTAGCATGATGCTTTCAGATGTGGCTGGGAAACGTGAAAATTGTAGTTTTTATGTGTTGTATCTGTGTGATCAAAATTGTATGAGAATGGTCTTAATTCCCTTGTGACCTCATAGCATCGTTTACTTTCCCAG-TCCAATTGCGCCGTTTTACGATTGTTTCTTTTT--AAAACCTCCTTTTGCATACCCCGCCATCACGCCTATGTGGGTATTTTATGTATCTCTTTATCGTACCCCGATTGATTTGCTCCTACTCAGGCTCAGCAGAACGATGCTTAGCAAAAACTGTGAAGCTCTCTGCAATAGTCAACCGTGCGACAATGGTCGCTGCGTAGAATGTTCTTCAATTGAAAACAACTTTCAACTCAATTAGATTCCCTTTTTTAATCCCTTTTTAGTTGTAAATGAATGTTTTCCTCTAGTTTATTTGTGCTTGTACGCTCTTTAGAATCTTTTTTAAACATTCTACTTTGATTTAGCAGACTGCAAACGGATAGACAATTACAGCAGTAGAACAAACAAACGCTCTACAATAGCATTCATATATACGTTCGTAACTGGTCAGTTGGTTTACTCGTAGTATCGTCGCTCATCGCTGGATAAGACATCGCGATCGCATCG-GAGTATACTTACCTGGAAAAGGGGAAGGATAGAGCAGCATATAAATTAGGTAGTAGTAGAAATAGATTGTGTCCTAGGTTATTTATGTAGCTAAAATTGGGTTAAAATCAAATACTTGTAATATTGAACGATGATGCAAATTATTCAACATTTTAAGATATATATATAAAACCAGACGTGGACCTGCATCTGTGTAAGCTTTTAAACGCGTCAACAACTATAT--TCTCAAACAGAATGTACATCATGCAGTGGTGCGGCAAAGAAAAGCAATGTTGTAGCCAATGGCGCAATGTGTCCAGTTTGTTTTAAGTAATGCTGTTCGGTTGCCCTACCGGTCAGCTGGGATGGTG-GACAGATTACGAAAAAGGTCTCTTAATTATTAGGAGCTTAACTACACTCAAAAGTCGATGATCCGATCCCCATATTTGTACTCATACTAGTGTGTAACAATAAAGCAATGCATACATTATTCGTCCTTTGA] [+] EMBL BM610923 [CCGGTCCCGCTGAACAGACACGAAGATGACGGCGATGCCATGGGCGATCGACGATTCCAGCGCAATCATCATCGCCGAAACGATGATGCAGATGACGAAAGGCCACAGCCCATCCTGTACTCCCCGGAACCGGAAGAGGAGCCGGACGAAATGGGTGGCAATGACCAGTATGCTCGGGAGGATAATACAAACTACCACCAAGGGGACGATAATGGTGGCCAAGATCATCCTGACCGTGGAGTGGAAGCAACCGATGAGCTGATGAATCAATGTCAGCCACAGGAAGATAGCTCGCAATTCGGCGGAGCAACGGCGGACGATCGTTTCGAAGAGCAGCGAGAACAGGAGCAAGCAGCTCCTTCGTCTGCCATGGAACAAGGTGTACGGGATGAGGATAATGACTACTCCCATCCGGAAAAGCAACAAGATCTGCCCGAGGACGATCGCAATGAGACTGCAGCAGCATCTTCATCTTCCCCGACGATGCCCACCCCCTGCCAGGAACAAAACAATGAGCCTAGTGTTCAATCGAATGATACCGCCGAAGAGGAACCAGCTTCTGGCGAACCTGCTGCATGTTGAAAAGGCAGCAGTTACATCCTAAAACATGTGTAAAGGGCGTCGTTGCATACAGTTATAATATATA ] [+] EMBL BX605198 [ TGGCAGTCACAGGAAGAAAGCTCGCAATTCGGCGGAGCAACGGCGGACGATCGGTTCGAAGAGCAGCGAGAACAGGAGCAAGCAGCTCCTTCGTCTGCCATGGAACAAGGTGTACGGGACGAGGATAATGACTACTCCCATCAGGAAAAGCAACAGGATCTGCCCGAGGACGATCGCAATGAGACTGCAGCAGCATCTTCATCTTCCCCGACGATGCCCACCCCCTGCCAGGAACAAAACAATGAGCCTAGTGTTCAATCGAATGACACCGCCGAAGAGGAATCAGCTTCTGGCGAACCTGCTGCATGTTGAAAAGGCAGCAGTTACATCCTAAAACATGTGTAAAGGGCGTCGAT ATATA TAT ATATTTAGTGTTGCATACAGTTAGTGCAAAATTGCAAAAGGAAGAAAGAAGAAAAAACAAGATTAGAATGATACTATACGACAGTGGGGGAGTGCATCTTTGAAAAGGCACACCAGTGGGAGGAATAGTTAAGCCAAACAAATTATTTTAAACGTAAGCAAAGAGCTAAGCAATCCAACTTTTAGCATGATGCTTTCAGATGTGGCTGGGAAACGTGAAAATTGTAGTTTTTATGTGTTGTATCTGTGTGATCAAAATTGTATGAGAATGGTCTTAATTCCCTTGTGACCTCATAGCATCGTTTACTTTCCCAG TCCAATTGCGCCGTTTTACGATTGTTTC ] [+] EMBL BX617100 [ CGAGAACAGGAGCAATCAGCTCCTTCGTCTGCCATGGAACAAGGTGTACGGGATGAGGATAATGACTACTCCCATCCGGAAAAGCAACAGGATCTGCCCGAGGACGATCGCAATGAGACTGCAGCAGCATCTTCTTCTTCCCCGATGATGCCCACCCCCTGCCAGGAACAAAACAATGAGCCTAGTGTTCAATCGAATGACACCGCCGAAGAGGAACCAGCTTCTGGCGAACCTGCTGCATGTTGAAAAGGCAGCAGTTACATCCTAAAACATGTGTAAAGGGCGTCG ATATA TAT ATATTTAGTGTTGCATACAGTTAGTGCAAAATTGCAAAAGGAAGAAAGAAGAAAAAACAAGATTATAATGATACTATACGACAGTGGGGGAGTGCATCTTTGAAAAGGCACACCAGTGGGAGGGATAGTTAAGCCAAACAAATTATTTTAAACGTAAGCAAAGAGCTAAGCAATCCAACTTAGAGCATGATGCTTTCAGATGTGGCCGGGAAACGTGAAAATTGTAGTTTTTATGTGTTGTATCTGTGTGACCAAAATTGTATGAGAATGGTCTTAATTCCCTTGTGACCTCATAGCATCGTTTACTTTCCCAG TCCAATTGCGCCGTTTTACGATTGTTTCTTTTT AAAACCTCCTTTTGCATACCCCGCCATCACGCCTATGTGGGTATTTTATGTATCTCTTTATCGTACCCCGATTGATTTGCTCCTACTCAGGCTCAGCAGA ] [+] EMBL CNS09KUU [ taACTTTCCCAGTTCAAATTGCGCCGTTTTACGATTGTTTCTTTTTTAAAAACCTCCTTTTGCATACCCCGCCATCACGCCTATGTGGGTATTTTATGTATCTCTTTATCGTACCCCGATTGATTTGCTCCTACTCAGGCTCAGCAGAACGATGCTTAGCAAAAACTGTGAAGCTCTCTGCAATAGTCAACCGTGCGACAATGGTCGCTGCGTAGAATGTTCTTCAATTGAAAACAACTTTCAACTCAATTAGATTCCCTTTTTTAATCCCTTTTTAGTTGTAAATGAATGTTTTCCTCTAGTTTATTTGTGCTTGTACGCTCTTTAGAATCTTTTTTAAACATTCTACTTTGATTTAGCAGACTGCAAACGGATAGACAATTACAGCAGTAGAACAAACAAACGCTCTACAATAGCATTCATATATACGTTCGTAACTGGTCAGTTGGTTTACTCGTAGTATCGTCGCTCATCGCTGGATAAGACATCGCGATCGCATCG GAGTTTACTTACCTGGAAAAGGGGAAGGATAGAGCAGCATATAAATTAGGTAGTAGTAGAAATAGATTGTGTCCTAGGTTATTTATGTAGCTAAAATTGGGTTAAAATCAAATACTTGTAATATTGAACGATGATGCAAATTATTCAACATTTTAAGATATATATATAA ] [-] EMBL CNS09KUV [ CAATTGAAAACAACTTTCAACTCAATTAGATTCCCTTTTTTAATCCCTTTTTAGTTGTAAATGAATGTTTTCCTCTAGTTTATTTGTGCTTGTACGCTCTTTAGAATCTTTTTTAAACATTCTACTTTGATTTAGCAGACTGCAAACGGATAGACAATTACAGCAGTAGAACAAACAAACGCTCTACAATAGCATTCATATATACGTTCGTAACTGGTCAGTTGGTTTACTCGTAGTATCGTCGCTCATCGCTGGATAAGACATCGCGATCGCATCGCGAGTATACTTACCTGGAAAAGGGGAAGGATAGAGCAGCATATAAATTAGGTAGTAGTAGAAATAGATTGTGTCCTAGGTTATTTATGTAGCTAAAATTGGGTTAAAATCAAATACTTGTAATATTGAACGATGATGCAAATTATTCAACATTTTAAGATATATATATAAAACCAGACGTGGACCTGCATCTGTGTAAGCTTTTAAACGCGTCAACAACTATAT TCTCAAACAGAATGTACATCATGCAGTGGTGCGGCAAAGAAAAGCAATGTTGTAGCCAATGGCGCAATGTGTCCAGTTTGTTTTAAGTAATGCTGTTCGGTTGCCCTACCGGTCAGCTGGGATGGTG GACAGATTACGAAAAA ] [-] EMBL BM617117 [ gaTTTACTCGTAGTATCGTCGCTCATCGCTGATTAAGACATCGCGATCGCATCGCGAGTAAACTTTCCTGG AAAGGGGAAGGATAGAGCAGCACATAAATTAGGTAGTAGTAGAAATAGATTGTGTCCTAGGTTATTTATGTAGCTAAAATTTGGTTAAAATCAAATACTTGTAATATTGAACGATGATGCAAATTATTCAACATTTTAAG ATATATATAATACCAGACGTGGACCTGCATCTGTGGAAGCTTTTAAACGCGTCAACAATTATATTCTCTCAAACAGAATGTACATCATGCAGTGGTGCGGCAAAGAAGAGCAATGTTGTAGCCAATGGCGCAATGTGTCCAGTTTGTTTTAAGTAATGCTGTTCGGTTGTCCTACCGGTCAGCTGGGATGGAGAAACAGATTACGAAAACGGTCTCTTAATTATTAGGAGCTTAACTACACTCAAAAGTCGATGATCCGATCCCCATATTTGTACTCATACTAGTGTGTAACAATAAAGCAATGCATACATTATTCGTCCTTTGA] consensusID : consensus_7623#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence [GCCCCGAGGTTAAGTGGGGGAGTGCATCTTTGAAAAGGCACACCAGTGGGAGGGATAGTTAAGCCAAACAAATTATTTTAAACGTAAGCAAAGAGCTAAGCAATCCAACTTAGAGCATGATGCTTTCAGATGTGGCCGGGAAACGTGAAAATTGTAGTTTTTATGTGTGTATCTGTGTGACCAAAATTGTATGAGAATGGTCTTAATTCCCTTGTGACCTCATAGCATCGTTTACTTTCCCAGTCCAATTGCGCCGTTTTACGATTGTTTCTTTTTAAAACCTCCTTTTGCATACCCCGCCATCACGCCTATGTGGGTATTTATGTATCTCTTTATCGTACCCCGATTGATTTGCTCCTACTCAGGCTCAGCAGAACGATGCTTAGCAAAAACTGTGAAGCTCTCTGCAATAGTCAACCGTGCGACAATGGTCGC] [+] EMBL AL694214 [GCCCCGAGGTTAAGTGGGGGAGTGCATCTTTGAAAAGGCACACCAGTGGGAGGGATAGTTAAGCCAAACAAATTATTTTAAACGTAAGCAAAGAGCTAAGCAATCCAACTTAGAGCATGATGCTTTCAGATGTGGCCGGGAAACGTGAAAATTGTAGTTTTTATGTGTGTATCTGTGTGACCAAAATTGTATGAGAATGGTCTTAATTCCCTTGTGACCTCATAGCATCGTTTACTTTCCCAGTCCAATTGCGCCGTTTTACGATTGTTTCTTTTTAAAACCTCCTTTTGCATACCCCGCCATCACGCCTATGTGGGTATTTATGTATCTCTTTATCGTACCCCGATTGATTTGCTCCTACTCAGGCTCAGCAGAACGATGCTTAGCAAAAACTGTGAAGCTCTCTGCAATAGTCAACCGTGCGACAATGGTCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7623#0 CCGGTCCCGCTGAACAGACACGAAGATGACGGCGATGCCATGGGCGATCGACGATTCCAG 60 consensus_7623#1 ------------------------------------------------------------ consensus_7623#0 CGCAATCATCATCGCCGAAACGATGATGCAGATGACGAAAGGCCACAGCCCATCCTGTAC 120 consensus_7623#1 ------------------------------------------------------------ consensus_7623#0 TCCCCGGAACCGGAAGAGGAGCCGGACGAAATGGGTGGCAATGACCAGTATGCTCGGGAG 180 consensus_7623#1 ------------------------------------------------------------ consensus_7623#0 GATAATACAAACTACCACCAAGGGGACGATAATGGTGGCCAAGATCATCCTGACCGTGGA 240 consensus_7623#1 ------------------------------------------------------------ consensus_7623#0 GTGGAAGCAACCGATGAGCTGATGAATCAATGTCAGCCACAGGAAGATAGCTCGCAATTC 300 consensus_7623#1 ------------------------------------------------------------ consensus_7623#0 GGCGGAGCAACGGCGGACGATCGTTTCGAAGAGCAGCGAGAACAGGAGCAAGCAGCTCCT 360 consensus_7623#1 ------------------------------------------------------------ consensus_7623#0 TCGTCTGCCATGGAACAAGGTGTACGGGATGAGGATAATGACTACTCCCATCCGGAAAAG 420 consensus_7623#1 ------------------------------------------------------------ consensus_7623#0 CAACAGGATCTGCCCGAGGACGATCGCAATGAGACTGCAGCAGCATCTTCATCTTCCCCG 480 consensus_7623#1 ------------------------------------------------------------ consensus_7623#0 ACGATGCCCACCCCCTGCCAGGAACAAAACAATGAGCCTAGTGTTCAATCGAATGACACC 540 consensus_7623#1 ------------------------------------------------------------ consensus_7623#0 GCCGAAGAGGAACCAGCTTCTGGCGAACCTGCTGCATGTTGAAAAGGCAGCAGTTACATC 600 consensus_7623#1 ------------------------------------------------------------ consensus_7623#0 CTAAAACATGTGTAAAGGGCGTCGATATATATATATATTTAGTGTTGCATACAGTTAGTG 660 consensus_7623#1 ------------------------------------------------------------ consensus_7623#0 CAAAATTGCAAAAGGAAGAAAGAAGAAAAAACAAGATTAGAATGATACTATACGACAGTG 720 consensus_7623#1 -------------------------------------------GCCCCGAGGTTA-AGTG 16 * * * * **** consensus_7623#0 GGGGAGTGCATCTTTGAAAAGGCACACCAGTGGGAGGAATAGTTAAGCCAAACAAATTAT 780 consensus_7623#1 GGGGAGTGCATCTTTGAAAAGGCACACCAGTGGGAGGGATAGTTAAGCCAAACAAATTAT 76 ************************************* ********************** consensus_7623#0 TTTAAACGTAAGCAAAGAGCTAAGCAATCCAACTTTTAGCATGATGCTTTCAGATGTGGC 840 consensus_7623#1 TTTAAACGTAAGCAAAGAGCTAAGCAATCCAACTTAGAGCATGATGCTTTCAGATGTGGC 136 *********************************** *********************** consensus_7623#0 TGGGAAACGTGAAAATTGTAGTTTTTATGTGTTGTATCTGTGTGATCAAAATTGTATGAG 900 consensus_7623#1 CGGGAAACGTGAAAATTGTAGTTTTTATGTGT-GTATCTGTGTGACCAAAATTGTATGAG 195 ******************************* ************ ************** consensus_7623#0 AATGGTCTTAATTCCCTTGTGACCTCATAGCATCGTTTACTTTCCCAGTCCAATTGCGCC 960 consensus_7623#1 AATGGTCTTAATTCCCTTGTGACCTCATAGCATCGTTTACTTTCCCAGTCCAATTGCGCC 255 ************************************************************ consensus_7623#0 GTTTTACGATTGTTTCTTTTTAAAACCTCCTTTTGCATACCCCGCCATCACGCCTATGTG 1020 consensus_7623#1 GTTTTACGATTGTTTCTTTTTAAAACCTCCTTTTGCATACCCCGCCATCACGCCTATGTG 315 ************************************************************ consensus_7623#0 GGTATTTTATGTATCTCTTTATCGTACCCCGATTGATTTGCTCCTACTCAGGCTCAGCAG 1080 consensus_7623#1 GGTATTT-ATGTATCTCTTTATCGTACCCCGATTGATTTGCTCCTACTCAGGCTCAGCAG 374 ******* **************************************************** consensus_7623#0 AACGATGCTTAGCAAAAACTGTGAAGCTCTCTGCAATAGTCAACCGTGCGACAATGGTCG 1140 consensus_7623#1 AACGATGCTTAGCAAAAACTGTGAAGCTCTCTGCAATAGTCAACCGTGCGACAATGGTCG 434 ************************************************************ consensus_7623#0 CTGCGTAGAATGTTCTTCAATTGAAAACAACTTTCAACTCAATTAGATTCCCTTTTTTAA 1200 consensus_7623#1 C----------------------------------------------------------- 435 * consensus_7623#0 TCCCTTTTTAGTTGTAAATGAATGTTTTCCTCTAGTTTATTTGTGCTTGTACGCTCTTTA 1260 consensus_7623#1 ------------------------------------------------------------ consensus_7623#0 GAATCTTTTTTAAACATTCTACTTTGATTTAGCAGACTGCAAACGGATAGACAATTACAG 1320 consensus_7623#1 ------------------------------------------------------------ consensus_7623#0 CAGTAGAACAAACAAACGCTCTACAATAGCATTCATATATACGTTCGTAACTGGTCAGTT 1380 consensus_7623#1 ------------------------------------------------------------ consensus_7623#0 GGTTTACTCGTAGTATCGTCGCTCATCGCTGGATAAGACATCGCGATCGCATCGGAGTAT 1440 consensus_7623#1 ------------------------------------------------------------ consensus_7623#0 ACTTACCTGGAAAAGGGGAAGGATAGAGCAGCATATAAATTAGGTAGTAGTAGAAATAGA 1500 consensus_7623#1 ------------------------------------------------------------ consensus_7623#0 TTGTGTCCTAGGTTATTTATGTAGCTAAAATTGGGTTAAAATCAAATACTTGTAATATTG 1560 consensus_7623#1 ------------------------------------------------------------ consensus_7623#0 AACGATGATGCAAATTATTCAACATTTTAAGATATATATATAAAACCAGACGTGGACCTG 1620 consensus_7623#1 ------------------------------------------------------------ consensus_7623#0 CATCTGTGTAAGCTTTTAAACGCGTCAACAACTATATTCTCAAACAGAATGTACATCATG 1680 consensus_7623#1 ------------------------------------------------------------ consensus_7623#0 CAGTGGTGCGGCAAAGAAAAGCAATGTTGTAGCCAATGGCGCAATGTGTCCAGTTTGTTT 1740 consensus_7623#1 ------------------------------------------------------------ consensus_7623#0 TAAGTAATGCTGTTCGGTTGCCCTACCGGTCAGCTGGGATGGTGGACAGATTACGAAAAA 1800 consensus_7623#1 ------------------------------------------------------------ consensus_7623#0 GGTCTCTTAATTATTAGGAGCTTAACTACACTCAAAAGTCGATGATCCGATCCCCATATT 1860 consensus_7623#1 ------------------------------------------------------------ consensus_7623#0 TGTACTCATACTAGTGTGTAACAATAAAGCAATGCATACATTATTCGTCCTTTGA 1915 consensus_7623#1 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||