|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7627#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 889 fasta sequence
[ATCGCCCGAGGTTTTTTTTCTGCACTCTCTCCCTCCCCAACAGAAGAAAGATATGCTGTTGTGTTGCGGCCGCAAAAGCAAATGAAAAGTTGAACTGAAACTTCCAAGCGCACAAAGTCGAGCCGTGAGGTGTTTTCCTTGTTTTTC-CGTGTTCGAGTGTGTGTGTGGTGGTTCTGTGTTTCGTACGTGTGCGGTGCGCGTTTGTGTTGGAGGTGTTTCGGTTTGTATTTTCTTCGTGTTTCCAGTTTGTTTTTCCTAGGTTTCGCTAAAAGATGTCATCCGGAAGACCTATCAAATGTGTGGTGGTCGG-CG-ACGGCACGGTGGGGAAGACGTGCATGTTGATCAGCTACACGACCGACAGCTTTCCCGGCGAATACGTACCCACGGTCTTCGACAACTACTCCGCCCCGATGGTGGTGGACGGTGTGCAAGTGTCGCTCGGGCTGTGGGATACGGCCGGGCAGGAAGACTACGATCGGCTAAGGCCCCTGTCCTACCCACAGACGGACGTGTTCCTCATATGCTACAGTGTGGCCAGCCCGTCGTCGTTCGAAAACGTTACCTCCAAATGGTATCCCGAGATCAAGCACCACTGCCCGGATGCGCCCATCATTTTAGTCGGAACCAAAATCGATCTGCGCGAGGATCGGGAAACGATAAGCTTGCTGGCGGACCAGGGCCTTTCCGCGCTGAAGCGCGAACAGGGCCAAAAGCTAGCGAACAAGATACGGGCGGTCAAGTATATGGAATGTTCGGCACTAACCCAGCGGGGCCTAAAGCAGGTGTTTGACGAAGCGGTGCGGGCCGTCCTCAGACCGGAGCCTTTGAAACGACGCCAACGAAAATGTGTTGTGATGTAGTGTGTGCTTGTGTGCATGTGTCCGCGTGG]
[+] EMBL AL693526 [ATCGCCCGAGGTTTTTTTTCTGCACTCTCTCCCTCCCCAACAGAAGAAAGATATGCTGTTGTGTTGCGGCCGCAAAAGCAAATGAAAAGTTGAACTGAAACTTCCAAGCGCACAAAGTCGAGCCGTGAGGTGTTTTCCTTGTTTTTC CGTGTTCGAGTGTGTGTGTGGTGGTTCTGTGTTTCGTACGTGTGCGGTGCGCGTTTGTGTTGGAGGTGTTTCGGTTTGTATTTTCTTCGTGTTTCCAGTTTGTTTTTCCTAGGTTTCGCTAAAAGATGTCATCCGGAAGACCTATCAAATGTGTGGTGGTCGGCCGAACGGCACGGTGGGGAAGACGTGCATGTTGATCAGCTACACGACCGACAGCTTTCCCGGCGAATACGT ]
[+] EMBL BM614897 [ CCGCAAAAGCAAATGAAAAGTTGAACTGAAACTTCCAAGCGCACAAAGTCGAGCCGTGAGGTGTTTTCCTTGTTTTTCGTGTGTGTGCGAGTGTGTGTGGTGGTTCTGTGTTTCGTACGTGTGCGGTGCGCGTTTGTGTTGGAGGTGTTTCGGTTTTTATTTTCTTCGTGTTTCCAGTTTGTTTTTCCTAGGTTTCGCTAAAAGATTTCATCCGGAAGACCTATCAAATGTGTGGTGGTCGG CG ACGGCACGGTGGGGAAGACGTGCATGTTGATCAGCTACACGACCGACAGCTTTCCCGGCGAATACGTACCCACGGTCTTCGACAACTACTCCGCCCCGATGGTGGTGGACGGTGTGCAAGTGTCGCTCGGGCTGTGGGATACGGCCGGGCAGGAAGACTACGATCGGCTAAGGCCCCTGTCCTACCCACAGACGGACGTGTTCCTCATATGCTACAGTGTGGCCAGCCCGTCGTCGTTCGAAAACGTTACCTCCAAATGGTATCCCGAGATCAAGCACCACTGCCCGGATGCGCCCATCATTTTAGTCGGAACCAAAATCGATCTGCGCGAGGATCGGGAAACGATAAGCTTGCTGGCGGACCAGGGCCTTTCCGCGCTGAAGCGCGAACAGGGCCAAAAGCTAGCGAACAAGATACGG ]
[+] EMBL BX622171 [ TGAACTGAAACTTCCAAGCGCATAAAGTCGAGCCGTGAGGAGTTTTCCTTGTTTTTC CGTGTTCGAGTGTGTGTGTGGTGGTTCTGTGTTTCGTACGTGTGCGGTGCGCGTTTGTGTTGGAGGTGTTTCGGTTTTTATTTTCTTCGTGTTTCCAGTTTGTTTTTCCTAGGTTTCGCTAAAAGATGTCATCCGGAAGACCTATCAAATGTGTGGTGGTCGG CG ACGGCACGGTGGGGAAGACGTGCATGTTGATCAGCTACACGACCGACAGCTTTCCCGGCGAATACGTACCCACGGTCTTCGACAACTACTCCGCCCCGATGGTGGTGGACGGTGTGCAAGTGTCGCTCGGGCTGTGGGATACGGCCGGGCAGGAAGACTACGATCGACTAAGGCCCCTGTCCTACCCACAGACGGACGTGTTCCTCATATGCTACAGTGTGGCCAGCCCGTCGTCGTTCGAAAACGTTACCTCCAAATGGTATCCCGAGATCAAGCACCACTGCCCGGATGCGCCCATCATTTTAGTCGGAACCAAAATCGATCTGCGCGAGGATCGGGAAACGATAAGCTTGCTGGCGGACCAGGGCCTTTCCGCGCTGAAGCGCGAACAGGGCCAAAAGCTAGCGAACAAGATACGGGCGGTCAAGTATATGGAATGTTCGGCACTAA ]
[+] EMBL AGA280243 [ TTTTC CGTGTTCGAGTGTGTGTGTGGTGGTTCTGTGTTTCGTACGTGTGCGGTGCGCGTTTGTGTTGGAGGTGTTTCGGTTTGTATTTTCTTCGTGTTTCCAGTTTGTTTTTCCTAGGTTTCGCTAAAAGATGTCATCCGGAAGACCTATCAAATGTGTGGTGGTCGG CG ACGGCACGGTGGGGAAGACGTGCATGTTGATCAGCTACACGACCGACAGCTTTTCCGGCGAATACGTACCCACGGTCTTC ]
[-] EMBL AGA281939 [ GTATCCCGAAATCAGGCACCACTGCCCGGATGCGCCCATCATTTTAGTCGGAACCAAAATCGATCTGCGCGAGGATCGGGAAACGATAAGCTTGCTGGCGGACCAGGGCCTTTCCGCGCTGAAGCGCGAACAGGGCCAAAAGCTAGCGAACAAGATACGGGCGGTAAAGTATATGGAATGTTCGGCACTAACCCAGCGGGGCCTAAAGCAGGTGTTTGACGAAGCGGTGCGGGCCGTCCTCAGACCGGAGCCTTTGAAACGACGCCAACGAAAATGTGTTGTGATGTAGTGTGTGCTTGTGTGCATGTGTCCGCGTGG]
consensusID : consensus_7627#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence
[CCCAGGGTTAAATATGCTGTTGTGTTGCGGCCGCAAAGCAATGATAAGTTGAACTGAAACTTCCAAGCGCACAAAGTCGAGCCGTGAGGTGTTTTCCTTGTTTTTCCGTGTTCGAGTGTGTGTGTGGTGGTTCTGTGTTTCGTACGTGTGCGGTGCGCGTTTGTGTTGGAGGTGTTNTCGGTATATGTATTTTCTATACGTGGTATTCCAGGTATATGGTTTNTTCCTANCGTTTCGCTAAACAGATGTCATCCGGAAGACCTATCAAATGTGTGGCTGGTCGCGCGCACGGCACGCGTGGGCGAAGACGTGCACTGTNGNATCACGCTACACGACCGACACGCTTTCCCGGCCGAACTACGCTACCCCACGGNTCTCTCGACAACTACTCCGGCCCCNNCTGGTGCGTGCGCCGCGCTGCTGCCACACGCTGGTCGCTCGGGNCTGCTGCGGCACTCACCGCGCCCGGGCCNCGACACGACCTACGGAATCCGNGGGTAAAGAGGCCCCCCTGCGTTCCCTAACGCCCAACCACGACACGGAACAGGTTGGTATACCCTCCATAACTGCTTACAACGTGGTGAGCGCAGCCCCGGTCCGGCTCGTCTCCGAAAANC]
[+] EMBL AL695747 [CCCAGGGTTAAATATGCTGTTGTGTTGCGGCCGCAAAGCAATGATAAGTTGAACTGAAACTTCCAAGCGCACAAAGTCGAGCCGTGAGGTGTTTTCCTTGTTTTTCCGTGTTCGAGTGTGTGTGTGGTGGTTCTGTGTTTCGTACGTGTGCGGTGCGCGTTTGTGTTGGAGGTGTTNTCGGTATATGTATTTTCTATACGTGGTATTCCAGGTATATGGTTTNTTCCTANCGTTTCGCTAAACAGATGTCATCCGGAAGACCTATCAAATGTGTGGCTGGTCGCGCGCACGGCACGCGTGGGCGAAGACGTGCACTGTNGNATCACGCTACACGACCGACACGCTTTCCCGGCCGAACTACGCTACCCCACGGNTCTCTCGACAACTACTCCGGCCCCNNCTGGTGCGTGCGCCGCGCTGCTGCCACACGCTGGTCGCTCGGGNCTGCTGCGGCACTCACCGCGCCCGGGCCNCGACACGACCTACGGAATCCGNGGGTAAAGAGGCCCCCCTGCGTTCCCTAACGCCCAACCACGACACGGAACAGGTTGGTATACCCTCCATAACTGCTTACAACGTGGTGAGCGCAGCCCCGGTCCGGCTCGTCTCCGAAAANC]
consensusID : consensus_7627#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence
[TTTTGTGTTGCGNCTGGATGAGCATNCTGAGGTGTTGAACTGGAACTTCCGAAGTGCACAAAGTCGAGCCTGTGACGTGTTGTCCCGTTGGTTNTTTCCAGTGGTTCTGAGTTGTGTGTGTGGGTGCTTCTGGTGGTCTTTCGTACGTGTGCGGATGCGCGTTGTGTNGGNGGTGTTTTCGGTGTCTGGTAATTTACTATCGATGTTGTCCAAGCTTCTGTATTTACCTATGTTNCGGTAAAAGATGTCATCCGGGAAANACCTATCAAATGTGTGGNTGGTCGCGTGGACGGCACGGCTGGGGAAGACGTNTNATGTTGATCAGTGTACCCGACCGAANGTTTCCCGGCGAATACGTACCCACGGTCTTCGACAACTAGTCCGCCCCGTATGGTTGCTGGACGNTGGTG]
[+] EMBL AL932085 [TTTTGTGTTGCGNCTGGATGAGCATNCTGAGGTGTTGAACTGGAACTTCCGAAGTGCACAAAGTCGAGCCTGTGACGTGTTGTCCCGTTGGTTNTTTCCAGTGGTTCTGAGTTGTGTGTGTGGGTGCTTCTGGTGGTCTTTCGTACGTGTGCGGATGCGCGTTGTGTNGGNGGTGTTTTCGGTGTCTGGTAATTTACTATCGATGTTGTCCAAGCTTCTGTATTTACCTATGTTNCGGTAAAAGATGTCATCCGGGAAANACCTATCAAATGTGTGGNTGGTCGCGTGGACGGCACGGCTGGGGAAGACGTNTNATGTTGATCAGTGTACCCGACCGAANGTTTCCCGGCGAATACGTACCCACGGTCTTCGACAACTAGTCCGCCCCGTATGGTTGCTGGACGNTGGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7627#0 ATCGCCCGAGGTTTTTTTTCTGCACTCTCTCCCTCCCCAACAGAAGAAAGATATGCTGTT 60
consensus_7627#2 --------------------------------------------------------TTTT 4
consensus_7627#1 ---------------------------------------CCCAGGGTTAAATATGCTGTT 21
* **
consensus_7627#0 GTGTTGCGGCCGCAAAAGCAAA-TGAAAAGTTGAACTGAAACTTCC-AAGCGCACAAAGT 118
consensus_7627#2 GTGTTGCGNCTGGATGAGCATNCTGAGGTGTTGAACTGGAACTTCCGAAGTGCACAAAGT 64
consensus_7627#1 GTGTTGCGGCCGCA-AAGCAA--TGATAAGTTGAACTGAAACTTCC-AAGCGCACAAAGT 77
******** * * * **** *** ********* ******* *** *********
consensus_7627#0 CGAGCC-GTGAGGTGTTTTCCT-----TGTTTTTCCGTG--TTCGAGT-GTGTGTGTGG- 168
consensus_7627#2 CGAGCCTGTGACGTGTTGTCCCGTTGGTTNTTTCCAGTGGTTCTGAGTTGTGTGTGTGGG 124
consensus_7627#1 CGAGCC-GTGAGGTGTTTTCCT-----TGTTTTTCCGTG--TTCGAGT-GTGTGTGTGG- 127
****** **** ***** *** * *** * *** * **** **********
consensus_7627#0 TGGTTCTG----TGTTTCGTACGTGTGCGG-TGCGCGTTTGTGTTGGAGGTGTTT-CGGT 222
consensus_7627#2 TGCTTCTGGTGGTCTTTCGTACGTGTGCGGATGCGCGTT-GTGTNGGNGGTGTTTTCGGT 183
consensus_7627#1 TGGTTCTG----TGTTTCGTACGTGTGCGG-TGCGCGTTTGTGTTGGAGGTGTTNTCGGT 182
** ***** * **************** ******** **** ** ****** ****
consensus_7627#0 TTGT----ATTTTCT-T-CG-TGTT-TCCAG---TTTG-TTTTT-CCTAG-GTTTCGCTA 268
consensus_7627#2 GTCTGGTAATTTACTAT-CGATGTTGTCCAAGCTTCTG-TATTTACCTAT-GTTNCGGTA 240
consensus_7627#1 ATATGT--ATTTTCTATACGTGGTATTCCAGGTATATGGTTTNTTCCTANCGTTTCGCTA 240
* * **** ** * ** ** **** * ** * * * **** *** ** **
consensus_7627#0 AA-AGATGTCATCCGG--AAGACCTATCAAATGTGTGGTGGTCGGCG---ACGGCACGG- 321
consensus_7627#2 AA-AGATGTCATCCGGGAAANACCTATCAAATGTGTGGNTGGTCGCGTGGACGGCACGGC 299
consensus_7627#1 AACAGATGTCATCCGG--AAGACCTATCAAATGTGTGGCTGGTCGCGCGCACGGCACGCG 298
** ************* ** ***************** * *** ********
consensus_7627#0 TGGG-GAAGACGTG-CATGTTGA-TCAGC-TACACGACCGACA-GCTTTCCCGGCGAA-- 374
consensus_7627#2 TGGG-GAAGACGTNTNATGTTGA-TCAGTGTACCCGACCGA-A-NGTTTCCCGGCGAA-- 353
consensus_7627#1 TGGGCGAAGACGTGCACTGTNGNATCACGCTACACGACCGACACGCTTTCCCGGCCGAAC 358
**** ******** *** * *** *** ******* * ********* *
consensus_7627#0 TACGTA--CCCACGGTCTTC--GACAACTACTCCG-CCCCG-ATGGTGG-TGGACGGTG- 426
consensus_7627#2 TACGTA--CCCACGGTCTTC--GACAACTAGTCCG-CCCCGTATGGTTGCTGGACGNTGG 408
consensus_7627#1 TACGCTACCCCACGGNTCTCTCGACAACTACTCCGGCCCCNNCTGGTGCGTGCGCCGCGC 418
**** ******* ** ******** **** **** **** ** * *
consensus_7627#0 TGCAAGTGT-CGCTCGG-GCTGTGGGATACGGCCGGGCAGGAAGACTACGATCGGCTAAG 484
consensus_7627#2 TG---------------------------------------------------------- 410
consensus_7627#1 TGCTGCCACACGCTGGTCGCTCGGGNCTGCTGCGGCACTCACCGCGCCCGGGCCNCGACA 478
**
consensus_7627#0 GCCCCTGTCCTACCCACAGACGGACGTGTTCCTCATATGCTACAGTGTGGCCAGCC-CGT 543
consensus_7627#2 ------------------------------------------------------------
consensus_7627#1 CGACCTACGGAATCCGNGGGTAAA-GAGGCCCCCCTGCGTTCCCTAACGCCCAACCACGA 537
consensus_7627#0 CGTCGTTCGAAAACGT-TACCTCCAAATGGTATCCCGAGATCAAGCACCACTGCCCGGAT 602
consensus_7627#2 ------------------------------------------------------------
consensus_7627#1 CACGGAACAGGTTGGTATACCCTCCATAACTGCTTACAACGTGGTGAGCGCAGCCCCGGT 597
consensus_7627#0 GCGCCCATCATTTTAGTCGGAACCAAAATCGATCTGCGCGAGGATCGGGAAACGATAAGC 662
consensus_7627#2 ------------------------------------------------------------
consensus_7627#1 CCGGC--TCGTCTCCG--AAAANC------------------------------------ 617
consensus_7627#0 TTGCTGGCGGACCAGGGCCTTTCCGCGCTGAAGCGCGAACAGGGCCAAAAGCTAGCGAAC 722
consensus_7627#2 ------------------------------------------------------------
consensus_7627#1 ------------------------------------------------------------
consensus_7627#0 AAGATACGGGCGGTCAAGTATATGGAATGTTCGGCACTAACCCAGCGGGGCCTAAAGCAG 782
consensus_7627#2 ------------------------------------------------------------
consensus_7627#1 ------------------------------------------------------------
consensus_7627#0 GTGTTTGACGAAGCGGTGCGGGCCGTCCTCAGACCGGAGCCTTTGAAACGACGCCAACGA 842
consensus_7627#2 ------------------------------------------------------------
consensus_7627#1 ------------------------------------------------------------
consensus_7627#0 AAATGTGTTGTGATGTAGTGTGTGCTTGTGTGCATGTGTCCGCGTGG 889
consensus_7627#2 -----------------------------------------------
consensus_7627#1 -----------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||