These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7630#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 982 fasta sequence [GACCAGGGCNGGTGAAGCGATGGAATGGACGCGAAGGTAAGAAGAACAACATCCGCGCGCGTACTGTGCACCGTGCATACCGTGCTGTGGCCCGGCGCTAAGTGGACAAAGTGTGAAATGCATCAGCTGGTGTCGGCAGCGGNCGT-GA-AG-AAAATTTACCGCAAGGCGTGTCTCGCTGTACACCCC-GACAAGCACACCGGTACGGA-GAACNNGAGTATGGCTAA-GATGATATTCATGGAGCTGAACAATGCGTGGACCGAGTTCGAAAGCGATGCCACCCAGCAAAATCTGTTCGCCAATTAAGTACACTCTGTTGCGTGCGTTATTACTGTTGCTGATGCCAACCCA-GATCGGTAGGTGATGGTTTGCTAGCATATTACAGTTG-CTTGTTTTT-GTCCCAGAGAAAACCGTACAGATTC-GGCCAATGCGAGTCGAAGTAAGTTTTCTTTTGCGTGTGGGTTCTCTTTACAACCGCGGCAAGCATTTTCGAAACATCACTTTCTTCTCCCGTTTTACGTTAAACAATTAGGAGAGTTTTAATGCATCGAACTATCAGTGTGTGTGTGTGTTCCTTTTCCTAGTAGAAATAGTATACTTCTTCCAACTGTAGAAGGAATCCACGTAAATGGCAGACATTTCCGAACAGTGTCACAGCACTAGATTAAAGAGCCCGGGCCAAGGCGTGGCAAAGAACTGAACTGGCAACGGTTGATTGATGCTAATGTGATAATTTGTCCCCTACTTTTGTGTTTTACTTTTATCGAAAGTGCACTTTAAAACATCACACCGTTTCAGGGTTTCGCTGATCGTACTGTTGAGGGCAAACCCGTACAGGTTGTCCGTTCGTTCCGTTAGCTCTGGTATGGGAAAATTCTCGTGCACATGCAGCGAACCAGAAAATATATTTTATTCCAATGCATTCCGCTTTAACAATGGATGCTGAGTATTGAATTGTTATCCCGTTGGATAAGCAACGATAAGC] [+] EMBL BX619858 [GACCAGGGCNGGTGAAGCGATGGAATGGACGCGAAGGTAAGAAGAACAACATCCGCGCGCGTACTGTGCACCGTGCATACCGTGCTGTGGCCCGGCGCTAAGTGGACAAAGTGTGAAATGCATCAGCTGGTGTCGGCAGCGGNCGTGGAGAGNAAAATTTACCGCAAGGCGTGTCTCGCTGTACACCCCGGACAAGCACACCGGTACGGAGGAACNNGAGTATGGCTAAGGATGATATTCATGGAGCTGAACAATGCGTGGACCGAGTTCGAAAGCGATGCCACCCAGCAAAATCTGTTCGCCAATTAAGTACACTCTGTTGCGTGCGTNATTACTGTTGCTGATGCCAACCCAGGATCGGTAGGTGATGGTTTGCTAGCATATAACAGTTGCCTTGTTTTTNGTCCCAGAGAAAACCGTACAGATNCNGCCCAATGCGAGTCGAAGTAAGTNTTCTTTTGCGTGTGGNNTCTCTTTACAACCGCGGCAAGCATTTTCGAAACATCACTTTCNNCTCCCGTTTTACGTNAAACAATTAGGAGAG TTTAATGCATCG ACTATCNGTGTGTGTGTGTG ] [+] EMBL BX628032 [ CACCGTGCATACCGTGCTCTGGTCCGGCGCTAAGTGGACAAAGTGTGAAATGCATCAGCTGGTGTCGGCAGCGGACGT GA AG AAAATTTACCGCAAGGCGTGTCTCGCTGTACACCCC GACAAGCACACCGGTACGGA GAACGAGAGTATGGCTAA GATGATATTCATGGAGCTGAACAACGCGTGGACCGAGTTCGAAAGCGATGCCACCCAGCAAAATCTGTTCGCCAATTAAGTACACTCTGTTGCGTGCGTTATTACTGCTGCTGATGCCAACCCA GATCGGTAGGTGATGGTTTGTTAGCATATTACAGTTG C TTT GTCCCAGAGAAAACCGTACAGATTC GGCCAATGCGAGTCGAAGTAAGTTTTCTTTTGCGTGTGGGTTCTCTTTACAACCGCGGCAAGCATTTTCGAAACATCACTTTCTTCTCCCGTTTTACGTTAAACAATTAGGAGAGTTTTAATGCATCGAACTATCA GTGTGTGTGTGTTCCTTTTCCTAGTAGAAATAGTACACTTCTTCCAACTGTAGAAGGAATCCACGTAAATTGCAGACATTTCCGAACAGTGTCACAGCACTAGATTAAAAAGCCCGGGCCAAGGCGTGGCAAAGAACTGAACTGGCAACGGTTGATTGATGCTAATGTGA ] [+] EMBL BX625317 [ CGAGTTCGAAAGCGATGCCACCCAGCAAAATCTGTTCGCCAATTAAGTACACTCTGTTGCGTGCGTTATTACTGTTGCTGATGCCAACCCA GATCGGTAGGTGATGGTTTGCTAGCATATTACAGTTG CTTGTTTTT GTCCCAGAGAAAACCGTACAGATTC GGCCAATGCGAGTCGAAGTAAGTTTTCTTTTGCGTGTGGGTTCTCTTTACAACCGCGGCAAGCATTTTCGAAACATCACTTTCTTCTCCCGTTTTACGTTAAACAATTAGGAGAGTTTTAATGCATCGAACTATCAGTGTGTGTGTGTGTTCCTTTTCCTAGTAGAAATAGTATACTTCTTCCAACTGTAGAAGGAATCCACGTAAATGGCAGACATTTCCGAACAGTGTCACAGCACTAGATTAAAGAGCCCGGGCCAAGGCGTGGCAAAGAACTGAACTGGCAACGGTTGATTGATGCTAATGTGATAATTTGTCCCCTACTTTTGTGTTTTACTTTTATCGAAAGTGCACTTTAAAACATCACACCGTTTCAGGGTTTCGCTGATCGTACTGTTGAGGGCAAACCCGTACAGGTTGTCCGTTCGTTCCGTTAGCTCTGGTATGGGAAAATTCTCGTGCACATGCAGCGAACCAGAAAATATATTTTATTCCAATGCATTCCGCTTTAACAATGGATG ] [+] EMBL BX612475 [ TTCTTCTCCCGTCTAACGTTAAACAATCAGGAGAGTCACAATGCATCGAACTATCAGGGTGTGTGTGTGTCCCTCGTCCTAGTAGAAATAGTATACTTCTCCCAACTGTAGAAGGAATCCACGTAAATGGCAGAAATTTCCGAACAGTGACACAGCACTAGATAAAAGAGCCCGGGCCAAGGCGTGGCAAAGAACTGAACTGGCAACGGTCGATAGATGCTAATGTGATAATGCGTCCCCTACTTTCGTGTTTTACTTTAATCGAAAGTGCACTTCAAAACATCACACCGTTTCAGGGTCTCGCTGATCGTACTGTTGAGGGCAAACCCGTACAGGTTGTCCGTTCGTTCCGTTAGCTCTGGTATGGGAAAATTCTCGTGCACACGCAGCGAACCAGAAAATATATTTTATTCCAAGGCATTCCGCTTTAACAATGGATGCTGAGTATTGAATTGTTATCCCGTTGGATAAGCAACGATAAGC] consensusID : consensus_7630#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 776 fasta sequence [AGAATCCCCCGAGGTTAGTGACATATTCGGTGACATTCTTGGCCAGCAGGGCTATTCGTTCGGCAGCACCAAAAACCAGNGTGCCGCGAACGATGAACGATATGCGCAAGGAGGAGTTGGTGCGGGAGATGGATCCCGAGCGGGTGAAGCTGATGGAATGGACCGAAGGTAAGAAGAACAACATCCGCGCGCTACTGTGCACCGTGCATACCTGTGCTGTGGCCCTGGCTGCTAAGTGGACAAAGTGTGAAATGCATCAGCTGGTGTCGGCAGCTGGACGTGAAGAAAATTTACCGCAAGGCGTGTCTCGCTGTACACCCCGACAAGCACACCTGGTACTGGAGAACGAGAGTATGGCTAAGATGATATTCATGGAGCTGAACAATGCGTGGACCTGAGTTCGAAAGCGATGCCACCCAGCAAAATCTGTTCGCCAATTAAGTACACTCTGTTGCGTGCGTTATTACTGTATGCTGATGCCAACCCAGATCGGTAGGTGATGGTTTGCTAGCATATTACAGTTGCTTGTTTTTTGTCCCAGAGAAAACCGTACAGATTCGGCCAATGCGAGTCGAAGTAAGTTTTCTTCATGCGTGTGGGTTCTCTTTACAACCGCGGCAAGCATTAACGAGACACATCACTTTCTTCTCCCGTATACGTTAAACAATATAGGAGAGTTTTAATGCATCGAACTATCAGCTGTGTGTGTGTGTACCTTTACTAGTAGAAATACGTATACTTTCTTCACATGNTGACGGAATCNGTAAATGGCCGAC] [+] EMBL AL930448 [AGAATCCCCCGAGGTTAGTGACATATTCGGTGACATTCTTGGCCAGCAGGGCTATTCGTTCGGCAGCACCAAAAACCAGNGTGCCGCGAACGATGAACGATATGCGCAAGGAGGAGTTGGTGCGGGAGATGGATCCCGAGCGGGTGAAGCTGATGGAATGGACCGAAGGTAAGAAGAACAACATCCGCGCGCTACTGTGCACCGTGCATACCTGTGCTGTGGCCCTGGCTGCTAAGTGGACAAAGTGTGAAATGCATCAGCTGGTGTCGGCAGCTGGACGTGAAGAAAATTTACCGCAAGGCGTGTCTCGCTGTACACCCCGACAAGCACACCTGGTACTGGAGAACGAGAGTATGGCTAAGATGATATTCATGGAGCTGAACAATGCGTGGACCTGAGTTCGAAAGCGATGCCACCCAGCAAAATCTGTTCGCCAATTAAGTACACTCTGTTGCGTGCGTTATTACTGTATGCTGATGCCAACCCAGATCGGTAGGTGATGGTTTGCTAGCATATTACAGTTGCTTGTTTTTTGTCCCAGAGAAAACCGTACAGATTCGGCCAATGCGAGTCGAAGTAAGTTTTCTTCATGCGTGTGGGTTCTCTTTACAACCGCGGCAAGCATTAACGAGACACATCACTTTCTTCTCCCGTATACGTTAAACAATATAGGAGAGTTTTAATGCATCGAACTATCAGCTGTGTGTGTGTGTACCTTTACTAGTAGAAATACGTATACTTTCTTCACATGNTGACGGAATCNGTAAATGGCCGAC] [+] EMBL AGA283177 [ GCGGGTGAAGCTGATGGAATGGACCGAAGGWAGAAAGAACAACATCCGCGCGCTACTGTGCACCGTGCATACC GTGCTGTGGCCC GGC GCTAAGTGGACAAAGTGTGAAATGCATCAGCTGGTGT ] consensusID : consensus_7630#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [GAATCCCCCGAGGTTACCAGCAAATCTGTTCGCCAACTTAAGTACACTCTGTTGCGTGCGTTATTACTGCTGCTGATGCCAACCCAGATCGGTAGGTGATGGTTTGTTAGCATATTGCAGTTGCTTGTTTTTGTCCCAGAGAAAACCGTACAGATTCGGCCAATGCGAGTCGAAGTAAGTTTTCTTTTGCGTGTGGGTTCTCTTTACAACCGCGGCAAGCATTTTCGAAACATCACTTTCTTCTCCCGTTTTACGTTAAACAATTAGGAGAGTTNTTAATGCATCGAACTATCAGTGTGTGTGTGTTCCTTTTCCTAGTAGAAATAGTACACTTCTTCCAACTGTAGAAGGAATCCACGTAAATGGCAGACATTTCCGAACAGTGTCACAGCACTAGATTAAAGAGCCCGGGCCAAGGCGTGGCAAAGAACTGAACTGGCAACGGTTGATTGATGCTAATGTGATAATTTGTCCCCTACTTTTGTGTTTTACTTTTATCGAAAGTGCACTTTAAAACATCACACCGTTTCAGGGATTTCGCTGATCGTACTGTTGACGGGCAAACCCGTACAGGTTGTCCGTNCGATTCCGTTACGCGCTGCGTCATGGGAAAATTCTCGTGCACATGCACGCGAACCANANACATATATTTCATTCCAATGCATNCCG] [+] EMBL AL931683 [GAATCCCCCGAGGTTACCAGCAAATCTGTTCGCCAACTTAAGTACACTCTGTTGCGTGCGTTATTACTGCTGCTGATGCCAACCCAGATCGGTAGGTGATGGTTTGTTAGCATATTGCAGTTGCTTGTTTTTGTCCCAGAGAAAACCGTACAGATTCGGCCAATGCGAGTCGAAGTAAGTTTTCTTTTGCGTGTGGGTTCTCTTTACAACCGCGGCAAGCATTTTCGAAACATCACTTTCTTCTCCCGTTTTACGTTAAACAATTAGGAGAGTTNTTAATGCATCGAACTATCAGTGTGTGTGTGTTCCTTTTCCTAGTAGAAATAGTACACTTCTTCCAACTGTAGAAGGAATCCACGTAAATGGCAGACATTTCCGAACAGTGTCACAGCACTAGATTAAAGAGCCCGGGCCAAGGCGTGGCAAAGAACTGAACTGGCAACGGTTGATTGATGCTAATGTGATAATTTGTCCCCTACTTTTGTGTTTTACTTTTATCGAAAGTGCACTTTAAAACATCACACCGTTTCAGGGATTTCGCTGATCGTACTGTTGACGGGCAAACCCGTACAGGTTGTCCGTNCGATTCCGTTACGCGCTGCGTCATGGGAAAATTCTCGTGCACATGCACGCGAACCANANACATATATTTCATTCCAATGCATNCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7630#0 GACCAGGGCNGGTGAAGCGATGGAATGGACGCGAAGGTAAGAAGAACAACATCCGCGCGC 60 consensus_7630#2 ------------------------------------------------------------ consensus_7630#1 ------------------------------------------------------------ consensus_7630#0 GTACTGTGCACCGTGCATACCGTGCTGTGGCCCGGCGCTAAGTGGACAAAGTGTGAAATG 120 consensus_7630#2 ------------------------------------------------------------ consensus_7630#1 ------------------------------------------------------------ consensus_7630#0 CATCAGCTGGTGTCGGCAGCGGNCGTGAAGAAAATTTACCGCAAGGCGTGTCTCGCTGTA 180 consensus_7630#2 ------------------------------------------------------------ consensus_7630#1 ------------------------------------------------------------ consensus_7630#0 CACCCCGACAAGCACACCGGTACGGAGAACNNGAGTATGGCTAAGATGATATTCATGGAG 240 consensus_7630#2 ------------------------------------------------------------ consensus_7630#1 --------------------------------------------------------AGAA 4 consensus_7630#0 CTGAACAATGCGTGGACCGAGTTCGAAAGCGATGCCACCCAGCAAAA---TCTGTTCGCC 297 consensus_7630#2 ------------------GAATCC---CCCGAGGTTACC-AGCAAA----TCTGTTCGCC 34 consensus_7630#1 TCCCCCGAGGTTAGTGACATATTCGGTGACATTCTTGGCCAGCAGGGCTATTCGTTCGGC 64 * * * * **** * ***** * consensus_7630#0 AA-TTAAGTACACTCTGTTGCGTGCGTTATTACTGTTGCTGATGCCAACCCAGATCGGTA 356 consensus_7630#2 AACTTAAGTACACTCTGTTGCGTGCGTTATTACTGCTGCTGATGCCAACCCAGATCGGTA 94 consensus_7630#1 AGCACCAAAAACCAGNGTGCCGCGAACGATGAACGATAT--GCGCAAGGAGGAGTTGGTG 122 * * * * ** ** * ** * * * ** * * *** consensus_7630#0 --GGTGATGGTTTGCTAGCATATTACAGTTGCTTGTTTTTGTCCCAGAGAAAACCGTACA 414 consensus_7630#2 --GGTGATGGTTTGTTAGCATATTGCAGTTGCTTGTTTTTGTCCCAGAGAAAACCGTACA 152 consensus_7630#1 CGGGAGATGGATCCCGAGCGGGT-GAAGCTGATGGAATGGACCGAAGGTAAGAAGAACAA 181 ** ***** * *** * ** ** * * * * ** ** * * consensus_7630#0 GATTCGGCCAATGCGAGTCGAAGTAAGTTTTCTTTTGCGTGTGGGTTCTCTTTACAACCG 474 consensus_7630#2 GATTCGGCCAATGCGAGTCGAAGTAAGTTTTCTTTTGCGTGTGGGTTCTCTTTACAACCG 212 consensus_7630#1 CATCCGCGCGCTACTG--TGCACCGTGCATACCTGTGC-TGTGGCCCTGGCTGCTAA--G 236 ** ** * * * * * * * * * *** ***** * ** * consensus_7630#0 CGGCAAGCATTTTCGAAACATCACTTTCT-TCTCCCGTTTTACGTTAAACAA--TTAGGA 531 consensus_7630#2 CGGCAAGCATTTTCGAAACATCACTTTCT-TCTCCCGTTTTACGTTAAACAA--TTAGGA 269 consensus_7630#1 TGGACAAAGTGTGAAATGCATCAGCTGGTGTCGGCAGCTGGACGTGAAGAAAATTTACCG 296 ** * * * * ***** * * ** * * * **** ** ** *** consensus_7630#0 GAGTTTT-AATGCATCGAAC-TATCAGTGTGTGTGTGTGTTCCTTT----TCCTAGTAGA 585 consensus_7630#2 GAGTTNTTAATGCATCGAAC-TATCAGTGTGTGTGTGT--TCCTTT----TCCTAGTAGA 322 consensus_7630#1 CAAGGCGTGTCTCGCTGTACACCCCGACAAGCACACCTGGTACTGGAGAACGAGAGTATG 356 * * * ** * * * * ** **** consensus_7630#0 AATAGTATACT--TCTTCCAACTGTAGAAGGAATCCACGTAAATGGCA----GACATTTC 639 consensus_7630#2 AATAGTACACT--TCTTCCAACTGTAGAAGGAATCCACGTAAATGGCA----GACATTTC 376 consensus_7630#1 GCTAAGATGATATTCATGGAGCTGAACAATGCGTGGACCTGAGTTCGAAAGCGATGCCAC 416 ** * * ** * * *** * ** * * ** * * * * ** * consensus_7630#0 CGAACAGTGTCACAGCACTAGATTAAAGAGCCCGGGCCAAGGCGTGGCAAAGAACTGA-A 698 consensus_7630#2 CGAACAGTGTCACAGCACTAGATTAAAGAGCCCGGGCCAAGGCGTGGCAAAGAACTGA-A 435 consensus_7630#1 CCAGCAAAATCTGTTCGCCAATTAAGTACACTCTGTTGCGTGCGTTATTACTGTATGCTG 476 * * ** ** * * * * * * * * **** * ** consensus_7630#0 CTGGCAAC---GGTTGATTGATGCTAATGTGATAATTTGTCCCCTACTTTTGTGTTTTAC 755 consensus_7630#2 CTGGCAAC---GGTTGATTGATGCTAATGTGATAATTTGTCCCCTACTTTTGTGTTTTAC 492 consensus_7630#1 ATGCCAACCCAGATCGGTAGGTGATGGTTTGCTAGCATATTACAGTTGCTTGTTTTTTGT 536 ** **** * * * * * ** * * ** ** * * * **** **** consensus_7630#0 TTTTATCGAAA--GTGCACTTTAAAACATCACA--CCGTTTCAGGG-TTTCGC-----TG 805 consensus_7630#2 TTTTATCGAAA--GTGCACTTTAAAACATCACA--CCGTTTCAGGGATTTCGC-----TG 543 consensus_7630#1 CCCAGAGAAAACCGTACAGATTCGGCCAATGCGAGTCGAAGTAAGTTTTCTTCATGCGTG 596 *** ** ** ** ** * ** * * ** * ** consensus_7630#0 ATCGTACTGTTGA-G-----GGCAAACCCGTACAGGTTGTC---CGTTCG-TTCCGTTA- 854 consensus_7630#2 ATCGTACTGTTGACG-----GGCAAACCCGTACAGGTTGTC---CGTNCGATTCCGTTAC 595 consensus_7630#1 TGGGTTCTCTTTACAACCGCGGCAAGCATTAACGAGACACATCACTTTCTTCTCCCGTAT 656 ** ** ** * ***** * ** * * * * *** ** consensus_7630#0 --GCTC--TGGTATGGGAAAATTCTCGTGCACATGCA-GCGAACCAGAAA-ATATATTTT 908 consensus_7630#2 GCGCTG--CGTCATGGGAAAATTCTCGTGCACATGCACGCGAACCANANACATATATTTC 653 consensus_7630#1 ACGTTAAACAATATAGGAGAGTTTTAATGCATCGAACTATCAGCTGTGTGTGTGTGTACC 716 * * ** *** * ** * **** * * * * * consensus_7630#0 ATT-CCAAT-GCATTCCGCTTTAACAATGGATGCTGAGTATTGAATTGTTATCCCGTTGG 966 consensus_7630#2 ATT-CCAAT-GCATNCCG------------------------------------------ 669 consensus_7630#1 TTTACTAGTAGAAATACGTATACTTTCTTCACATGNTGACGGAATCNGTAAATGGCCGAC 776 ** * * * * * ** consensus_7630#0 ATAAGCAACGATAAGC 982 consensus_7630#2 ---------------- consensus_7630#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||