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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7630#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 982 fasta sequence
[GACCAGGGCNGGTGAAGCGATGGAATGGACGCGAAGGTAAGAAGAACAACATCCGCGCGCGTACTGTGCACCGTGCATACCGTGCTGTGGCCCGGCGCTAAGTGGACAAAGTGTGAAATGCATCAGCTGGTGTCGGCAGCGGNCGT-GA-AG-AAAATTTACCGCAAGGCGTGTCTCGCTGTACACCCC-GACAAGCACACCGGTACGGA-GAACNNGAGTATGGCTAA-GATGATATTCATGGAGCTGAACAATGCGTGGACCGAGTTCGAAAGCGATGCCACCCAGCAAAATCTGTTCGCCAATTAAGTACACTCTGTTGCGTGCGTTATTACTGTTGCTGATGCCAACCCA-GATCGGTAGGTGATGGTTTGCTAGCATATTACAGTTG-CTTGTTTTT-GTCCCAGAGAAAACCGTACAGATTC-GGCCAATGCGAGTCGAAGTAAGTTTTCTTTTGCGTGTGGGTTCTCTTTACAACCGCGGCAAGCATTTTCGAAACATCACTTTCTTCTCCCGTTTTACGTTAAACAATTAGGAGAGTTTTAATGCATCGAACTATCAGTGTGTGTGTGTGTTCCTTTTCCTAGTAGAAATAGTATACTTCTTCCAACTGTAGAAGGAATCCACGTAAATGGCAGACATTTCCGAACAGTGTCACAGCACTAGATTAAAGAGCCCGGGCCAAGGCGTGGCAAAGAACTGAACTGGCAACGGTTGATTGATGCTAATGTGATAATTTGTCCCCTACTTTTGTGTTTTACTTTTATCGAAAGTGCACTTTAAAACATCACACCGTTTCAGGGTTTCGCTGATCGTACTGTTGAGGGCAAACCCGTACAGGTTGTCCGTTCGTTCCGTTAGCTCTGGTATGGGAAAATTCTCGTGCACATGCAGCGAACCAGAAAATATATTTTATTCCAATGCATTCCGCTTTAACAATGGATGCTGAGTATTGAATTGTTATCCCGTTGGATAAGCAACGATAAGC]
[+] EMBL BX619858 [GACCAGGGCNGGTGAAGCGATGGAATGGACGCGAAGGTAAGAAGAACAACATCCGCGCGCGTACTGTGCACCGTGCATACCGTGCTGTGGCCCGGCGCTAAGTGGACAAAGTGTGAAATGCATCAGCTGGTGTCGGCAGCGGNCGTGGAGAGNAAAATTTACCGCAAGGCGTGTCTCGCTGTACACCCCGGACAAGCACACCGGTACGGAGGAACNNGAGTATGGCTAAGGATGATATTCATGGAGCTGAACAATGCGTGGACCGAGTTCGAAAGCGATGCCACCCAGCAAAATCTGTTCGCCAATTAAGTACACTCTGTTGCGTGCGTNATTACTGTTGCTGATGCCAACCCAGGATCGGTAGGTGATGGTTTGCTAGCATATAACAGTTGCCTTGTTTTTNGTCCCAGAGAAAACCGTACAGATNCNGCCCAATGCGAGTCGAAGTAAGTNTTCTTTTGCGTGTGGNNTCTCTTTACAACCGCGGCAAGCATTTTCGAAACATCACTTTCNNCTCCCGTTTTACGTNAAACAATTAGGAGAG TTTAATGCATCG ACTATCNGTGTGTGTGTGTG ]
[+] EMBL BX628032 [ CACCGTGCATACCGTGCTCTGGTCCGGCGCTAAGTGGACAAAGTGTGAAATGCATCAGCTGGTGTCGGCAGCGGACGT GA AG AAAATTTACCGCAAGGCGTGTCTCGCTGTACACCCC GACAAGCACACCGGTACGGA GAACGAGAGTATGGCTAA GATGATATTCATGGAGCTGAACAACGCGTGGACCGAGTTCGAAAGCGATGCCACCCAGCAAAATCTGTTCGCCAATTAAGTACACTCTGTTGCGTGCGTTATTACTGCTGCTGATGCCAACCCA GATCGGTAGGTGATGGTTTGTTAGCATATTACAGTTG C TTT GTCCCAGAGAAAACCGTACAGATTC GGCCAATGCGAGTCGAAGTAAGTTTTCTTTTGCGTGTGGGTTCTCTTTACAACCGCGGCAAGCATTTTCGAAACATCACTTTCTTCTCCCGTTTTACGTTAAACAATTAGGAGAGTTTTAATGCATCGAACTATCA GTGTGTGTGTGTTCCTTTTCCTAGTAGAAATAGTACACTTCTTCCAACTGTAGAAGGAATCCACGTAAATTGCAGACATTTCCGAACAGTGTCACAGCACTAGATTAAAAAGCCCGGGCCAAGGCGTGGCAAAGAACTGAACTGGCAACGGTTGATTGATGCTAATGTGA ]
[+] EMBL BX625317 [ CGAGTTCGAAAGCGATGCCACCCAGCAAAATCTGTTCGCCAATTAAGTACACTCTGTTGCGTGCGTTATTACTGTTGCTGATGCCAACCCA GATCGGTAGGTGATGGTTTGCTAGCATATTACAGTTG CTTGTTTTT GTCCCAGAGAAAACCGTACAGATTC GGCCAATGCGAGTCGAAGTAAGTTTTCTTTTGCGTGTGGGTTCTCTTTACAACCGCGGCAAGCATTTTCGAAACATCACTTTCTTCTCCCGTTTTACGTTAAACAATTAGGAGAGTTTTAATGCATCGAACTATCAGTGTGTGTGTGTGTTCCTTTTCCTAGTAGAAATAGTATACTTCTTCCAACTGTAGAAGGAATCCACGTAAATGGCAGACATTTCCGAACAGTGTCACAGCACTAGATTAAAGAGCCCGGGCCAAGGCGTGGCAAAGAACTGAACTGGCAACGGTTGATTGATGCTAATGTGATAATTTGTCCCCTACTTTTGTGTTTTACTTTTATCGAAAGTGCACTTTAAAACATCACACCGTTTCAGGGTTTCGCTGATCGTACTGTTGAGGGCAAACCCGTACAGGTTGTCCGTTCGTTCCGTTAGCTCTGGTATGGGAAAATTCTCGTGCACATGCAGCGAACCAGAAAATATATTTTATTCCAATGCATTCCGCTTTAACAATGGATG ]
[+] EMBL BX612475 [ TTCTTCTCCCGTCTAACGTTAAACAATCAGGAGAGTCACAATGCATCGAACTATCAGGGTGTGTGTGTGTCCCTCGTCCTAGTAGAAATAGTATACTTCTCCCAACTGTAGAAGGAATCCACGTAAATGGCAGAAATTTCCGAACAGTGACACAGCACTAGATAAAAGAGCCCGGGCCAAGGCGTGGCAAAGAACTGAACTGGCAACGGTCGATAGATGCTAATGTGATAATGCGTCCCCTACTTTCGTGTTTTACTTTAATCGAAAGTGCACTTCAAAACATCACACCGTTTCAGGGTCTCGCTGATCGTACTGTTGAGGGCAAACCCGTACAGGTTGTCCGTTCGTTCCGTTAGCTCTGGTATGGGAAAATTCTCGTGCACACGCAGCGAACCAGAAAATATATTTTATTCCAAGGCATTCCGCTTTAACAATGGATGCTGAGTATTGAATTGTTATCCCGTTGGATAAGCAACGATAAGC]
consensusID : consensus_7630#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 776 fasta sequence
[AGAATCCCCCGAGGTTAGTGACATATTCGGTGACATTCTTGGCCAGCAGGGCTATTCGTTCGGCAGCACCAAAAACCAGNGTGCCGCGAACGATGAACGATATGCGCAAGGAGGAGTTGGTGCGGGAGATGGATCCCGAGCGGGTGAAGCTGATGGAATGGACCGAAGGTAAGAAGAACAACATCCGCGCGCTACTGTGCACCGTGCATACCTGTGCTGTGGCCCTGGCTGCTAAGTGGACAAAGTGTGAAATGCATCAGCTGGTGTCGGCAGCTGGACGTGAAGAAAATTTACCGCAAGGCGTGTCTCGCTGTACACCCCGACAAGCACACCTGGTACTGGAGAACGAGAGTATGGCTAAGATGATATTCATGGAGCTGAACAATGCGTGGACCTGAGTTCGAAAGCGATGCCACCCAGCAAAATCTGTTCGCCAATTAAGTACACTCTGTTGCGTGCGTTATTACTGTATGCTGATGCCAACCCAGATCGGTAGGTGATGGTTTGCTAGCATATTACAGTTGCTTGTTTTTTGTCCCAGAGAAAACCGTACAGATTCGGCCAATGCGAGTCGAAGTAAGTTTTCTTCATGCGTGTGGGTTCTCTTTACAACCGCGGCAAGCATTAACGAGACACATCACTTTCTTCTCCCGTATACGTTAAACAATATAGGAGAGTTTTAATGCATCGAACTATCAGCTGTGTGTGTGTGTACCTTTACTAGTAGAAATACGTATACTTTCTTCACATGNTGACGGAATCNGTAAATGGCCGAC]
[+] EMBL AL930448 [AGAATCCCCCGAGGTTAGTGACATATTCGGTGACATTCTTGGCCAGCAGGGCTATTCGTTCGGCAGCACCAAAAACCAGNGTGCCGCGAACGATGAACGATATGCGCAAGGAGGAGTTGGTGCGGGAGATGGATCCCGAGCGGGTGAAGCTGATGGAATGGACCGAAGGTAAGAAGAACAACATCCGCGCGCTACTGTGCACCGTGCATACCTGTGCTGTGGCCCTGGCTGCTAAGTGGACAAAGTGTGAAATGCATCAGCTGGTGTCGGCAGCTGGACGTGAAGAAAATTTACCGCAAGGCGTGTCTCGCTGTACACCCCGACAAGCACACCTGGTACTGGAGAACGAGAGTATGGCTAAGATGATATTCATGGAGCTGAACAATGCGTGGACCTGAGTTCGAAAGCGATGCCACCCAGCAAAATCTGTTCGCCAATTAAGTACACTCTGTTGCGTGCGTTATTACTGTATGCTGATGCCAACCCAGATCGGTAGGTGATGGTTTGCTAGCATATTACAGTTGCTTGTTTTTTGTCCCAGAGAAAACCGTACAGATTCGGCCAATGCGAGTCGAAGTAAGTTTTCTTCATGCGTGTGGGTTCTCTTTACAACCGCGGCAAGCATTAACGAGACACATCACTTTCTTCTCCCGTATACGTTAAACAATATAGGAGAGTTTTAATGCATCGAACTATCAGCTGTGTGTGTGTGTACCTTTACTAGTAGAAATACGTATACTTTCTTCACATGNTGACGGAATCNGTAAATGGCCGAC]
[+] EMBL AGA283177 [ GCGGGTGAAGCTGATGGAATGGACCGAAGGWAGAAAGAACAACATCCGCGCGCTACTGTGCACCGTGCATACC GTGCTGTGGCCC GGC GCTAAGTGGACAAAGTGTGAAATGCATCAGCTGGTGT ]
consensusID : consensus_7630#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence
[GAATCCCCCGAGGTTACCAGCAAATCTGTTCGCCAACTTAAGTACACTCTGTTGCGTGCGTTATTACTGCTGCTGATGCCAACCCAGATCGGTAGGTGATGGTTTGTTAGCATATTGCAGTTGCTTGTTTTTGTCCCAGAGAAAACCGTACAGATTCGGCCAATGCGAGTCGAAGTAAGTTTTCTTTTGCGTGTGGGTTCTCTTTACAACCGCGGCAAGCATTTTCGAAACATCACTTTCTTCTCCCGTTTTACGTTAAACAATTAGGAGAGTTNTTAATGCATCGAACTATCAGTGTGTGTGTGTTCCTTTTCCTAGTAGAAATAGTACACTTCTTCCAACTGTAGAAGGAATCCACGTAAATGGCAGACATTTCCGAACAGTGTCACAGCACTAGATTAAAGAGCCCGGGCCAAGGCGTGGCAAAGAACTGAACTGGCAACGGTTGATTGATGCTAATGTGATAATTTGTCCCCTACTTTTGTGTTTTACTTTTATCGAAAGTGCACTTTAAAACATCACACCGTTTCAGGGATTTCGCTGATCGTACTGTTGACGGGCAAACCCGTACAGGTTGTCCGTNCGATTCCGTTACGCGCTGCGTCATGGGAAAATTCTCGTGCACATGCACGCGAACCANANACATATATTTCATTCCAATGCATNCCG]
[+] EMBL AL931683 [GAATCCCCCGAGGTTACCAGCAAATCTGTTCGCCAACTTAAGTACACTCTGTTGCGTGCGTTATTACTGCTGCTGATGCCAACCCAGATCGGTAGGTGATGGTTTGTTAGCATATTGCAGTTGCTTGTTTTTGTCCCAGAGAAAACCGTACAGATTCGGCCAATGCGAGTCGAAGTAAGTTTTCTTTTGCGTGTGGGTTCTCTTTACAACCGCGGCAAGCATTTTCGAAACATCACTTTCTTCTCCCGTTTTACGTTAAACAATTAGGAGAGTTNTTAATGCATCGAACTATCAGTGTGTGTGTGTTCCTTTTCCTAGTAGAAATAGTACACTTCTTCCAACTGTAGAAGGAATCCACGTAAATGGCAGACATTTCCGAACAGTGTCACAGCACTAGATTAAAGAGCCCGGGCCAAGGCGTGGCAAAGAACTGAACTGGCAACGGTTGATTGATGCTAATGTGATAATTTGTCCCCTACTTTTGTGTTTTACTTTTATCGAAAGTGCACTTTAAAACATCACACCGTTTCAGGGATTTCGCTGATCGTACTGTTGACGGGCAAACCCGTACAGGTTGTCCGTNCGATTCCGTTACGCGCTGCGTCATGGGAAAATTCTCGTGCACATGCACGCGAACCANANACATATATTTCATTCCAATGCATNCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7630#0 GACCAGGGCNGGTGAAGCGATGGAATGGACGCGAAGGTAAGAAGAACAACATCCGCGCGC 60
consensus_7630#2 ------------------------------------------------------------
consensus_7630#1 ------------------------------------------------------------
consensus_7630#0 GTACTGTGCACCGTGCATACCGTGCTGTGGCCCGGCGCTAAGTGGACAAAGTGTGAAATG 120
consensus_7630#2 ------------------------------------------------------------
consensus_7630#1 ------------------------------------------------------------
consensus_7630#0 CATCAGCTGGTGTCGGCAGCGGNCGTGAAGAAAATTTACCGCAAGGCGTGTCTCGCTGTA 180
consensus_7630#2 ------------------------------------------------------------
consensus_7630#1 ------------------------------------------------------------
consensus_7630#0 CACCCCGACAAGCACACCGGTACGGAGAACNNGAGTATGGCTAAGATGATATTCATGGAG 240
consensus_7630#2 ------------------------------------------------------------
consensus_7630#1 --------------------------------------------------------AGAA 4
consensus_7630#0 CTGAACAATGCGTGGACCGAGTTCGAAAGCGATGCCACCCAGCAAAA---TCTGTTCGCC 297
consensus_7630#2 ------------------GAATCC---CCCGAGGTTACC-AGCAAA----TCTGTTCGCC 34
consensus_7630#1 TCCCCCGAGGTTAGTGACATATTCGGTGACATTCTTGGCCAGCAGGGCTATTCGTTCGGC 64
* * * * **** * ***** *
consensus_7630#0 AA-TTAAGTACACTCTGTTGCGTGCGTTATTACTGTTGCTGATGCCAACCCAGATCGGTA 356
consensus_7630#2 AACTTAAGTACACTCTGTTGCGTGCGTTATTACTGCTGCTGATGCCAACCCAGATCGGTA 94
consensus_7630#1 AGCACCAAAAACCAGNGTGCCGCGAACGATGAACGATAT--GCGCAAGGAGGAGTTGGTG 122
* * * * ** ** * ** * * * ** * * ***
consensus_7630#0 --GGTGATGGTTTGCTAGCATATTACAGTTGCTTGTTTTTGTCCCAGAGAAAACCGTACA 414
consensus_7630#2 --GGTGATGGTTTGTTAGCATATTGCAGTTGCTTGTTTTTGTCCCAGAGAAAACCGTACA 152
consensus_7630#1 CGGGAGATGGATCCCGAGCGGGT-GAAGCTGATGGAATGGACCGAAGGTAAGAAGAACAA 181
** ***** * *** * ** ** * * * * ** ** * *
consensus_7630#0 GATTCGGCCAATGCGAGTCGAAGTAAGTTTTCTTTTGCGTGTGGGTTCTCTTTACAACCG 474
consensus_7630#2 GATTCGGCCAATGCGAGTCGAAGTAAGTTTTCTTTTGCGTGTGGGTTCTCTTTACAACCG 212
consensus_7630#1 CATCCGCGCGCTACTG--TGCACCGTGCATACCTGTGC-TGTGGCCCTGGCTGCTAA--G 236
** ** * * * * * * * * * *** ***** * ** *
consensus_7630#0 CGGCAAGCATTTTCGAAACATCACTTTCT-TCTCCCGTTTTACGTTAAACAA--TTAGGA 531
consensus_7630#2 CGGCAAGCATTTTCGAAACATCACTTTCT-TCTCCCGTTTTACGTTAAACAA--TTAGGA 269
consensus_7630#1 TGGACAAAGTGTGAAATGCATCAGCTGGTGTCGGCAGCTGGACGTGAAGAAAATTTACCG 296
** * * * * ***** * * ** * * * **** ** ** ***
consensus_7630#0 GAGTTTT-AATGCATCGAAC-TATCAGTGTGTGTGTGTGTTCCTTT----TCCTAGTAGA 585
consensus_7630#2 GAGTTNTTAATGCATCGAAC-TATCAGTGTGTGTGTGT--TCCTTT----TCCTAGTAGA 322
consensus_7630#1 CAAGGCGTGTCTCGCTGTACACCCCGACAAGCACACCTGGTACTGGAGAACGAGAGTATG 356
* * * ** * * * * ** ****
consensus_7630#0 AATAGTATACT--TCTTCCAACTGTAGAAGGAATCCACGTAAATGGCA----GACATTTC 639
consensus_7630#2 AATAGTACACT--TCTTCCAACTGTAGAAGGAATCCACGTAAATGGCA----GACATTTC 376
consensus_7630#1 GCTAAGATGATATTCATGGAGCTGAACAATGCGTGGACCTGAGTTCGAAAGCGATGCCAC 416
** * * ** * * *** * ** * * ** * * * * ** *
consensus_7630#0 CGAACAGTGTCACAGCACTAGATTAAAGAGCCCGGGCCAAGGCGTGGCAAAGAACTGA-A 698
consensus_7630#2 CGAACAGTGTCACAGCACTAGATTAAAGAGCCCGGGCCAAGGCGTGGCAAAGAACTGA-A 435
consensus_7630#1 CCAGCAAAATCTGTTCGCCAATTAAGTACACTCTGTTGCGTGCGTTATTACTGTATGCTG 476
* * ** ** * * * * * * * * **** * **
consensus_7630#0 CTGGCAAC---GGTTGATTGATGCTAATGTGATAATTTGTCCCCTACTTTTGTGTTTTAC 755
consensus_7630#2 CTGGCAAC---GGTTGATTGATGCTAATGTGATAATTTGTCCCCTACTTTTGTGTTTTAC 492
consensus_7630#1 ATGCCAACCCAGATCGGTAGGTGATGGTTTGCTAGCATATTACAGTTGCTTGTTTTTTGT 536
** **** * * * * * ** * * ** ** * * * **** ****
consensus_7630#0 TTTTATCGAAA--GTGCACTTTAAAACATCACA--CCGTTTCAGGG-TTTCGC-----TG 805
consensus_7630#2 TTTTATCGAAA--GTGCACTTTAAAACATCACA--CCGTTTCAGGGATTTCGC-----TG 543
consensus_7630#1 CCCAGAGAAAACCGTACAGATTCGGCCAATGCGAGTCGAAGTAAGTTTTCTTCATGCGTG 596
*** ** ** ** ** * ** * * ** * **
consensus_7630#0 ATCGTACTGTTGA-G-----GGCAAACCCGTACAGGTTGTC---CGTTCG-TTCCGTTA- 854
consensus_7630#2 ATCGTACTGTTGACG-----GGCAAACCCGTACAGGTTGTC---CGTNCGATTCCGTTAC 595
consensus_7630#1 TGGGTTCTCTTTACAACCGCGGCAAGCATTAACGAGACACATCACTTTCTTCTCCCGTAT 656
** ** ** * ***** * ** * * * * *** **
consensus_7630#0 --GCTC--TGGTATGGGAAAATTCTCGTGCACATGCA-GCGAACCAGAAA-ATATATTTT 908
consensus_7630#2 GCGCTG--CGTCATGGGAAAATTCTCGTGCACATGCACGCGAACCANANACATATATTTC 653
consensus_7630#1 ACGTTAAACAATATAGGAGAGTTTTAATGCATCGAACTATCAGCTGTGTGTGTGTGTACC 716
* * ** *** * ** * **** * * * * *
consensus_7630#0 ATT-CCAAT-GCATTCCGCTTTAACAATGGATGCTGAGTATTGAATTGTTATCCCGTTGG 966
consensus_7630#2 ATT-CCAAT-GCATNCCG------------------------------------------ 669
consensus_7630#1 TTTACTAGTAGAAATACGTATACTTTCTTCACATGNTGACGGAATCNGTAAATGGCCGAC 776
** * * * * * **
consensus_7630#0 ATAAGCAACGATAAGC 982
consensus_7630#2 ----------------
consensus_7630#1 ----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||