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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7631#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1797 fasta sequence
[CCGCTTCAATTAAGCAAGTTATATTCTCCTTCATGACGACCTTTAACACATAGCTTTTTTCATTGAAAAGTCGGAATTAGATTTCCTAGTTTGATATAAAATCCCAAAAAACAATACAAAAATGTTTCATTATTTAACTAAAACAAAAAAAATCCAAATATAAAACATCACAGTTATTGGAATAACATTGCAGGAGCTCCAAGCAAACACGTCTAGTTGCTTCGTTTTCGTATAGCACAGGGCAAAGCAAGTACGACAACTTCGGAGTTAGTAGCGCGTTGGCGTACCCTCGTGCCATTCGTTTATCGTGGGGTTTTTCCACTGACATTTTCCTTTTCCATTGCAAGAATGTTCTAGCTTCGCGTAGTCACATTAACATCGGCACATGACACGAACGGCTACCATTCGGCAAACGGACGGAGAACGAGCATCCTCCGTTCAACGAATAGTTTACAGTGTTACAGTGCTTTCGTTGCCCGTTGTGATTGGAGGCTGTTAAAATAGTTTAGATGTTTAGTTAAAACTTTGCGTAGTATCTCATTGCTTTACGCGTAGCAACGACCCACAAAGAAAGCAAGGTTACCATTTCCAGATATTGTGGGCTTTAAAAAGTAATCCATCCGACCTGTCTGCCCTACTGTGGGGCTACAGTTTCTACAGTGCT-GTGTGGGAAGTGTTTGTGCGCAACGAAAAGATACTATTACACTGCGACAGAACATACTGCAATTTAAATACAAATCCTTGGGACAACTTCTGCTTGCCAGAGATTCCCATATTAATCATGGCTCCTACAAACTGGTTGTGGTTTGGAAACATATTTTTTGTGTCCTTCCCGTTGGCGATTTTGGGAATCGATCTAAGTAGACTCTACGGGCATATGCCAGCTGTTTCTAAGCGCAATGAGGCTTGCCATCCATACGAGCCGTTCAAGTGCCCGGGCGATGGAAATTGTATTTCCATACAGTACCTGTGCGACGGTGCGCCCGATTGCTCCGATGGGTATGACGAAGATATGCGTCTTTGTACAGCAGCAAAGCGTCCACCAGTTGAGGAAACAGCATCATTCTTACAAAGCTTGCTGGCATCACACGGTCCTAACTATCTGGAAAAATTATTCGGCAGTAAAGCGCGTGACGCATTAGCACCACTTGGTGGTGTGGAAAAAGTGGCCATTGCTCTCAGTGAATCGCAAACCATCGAAGATTTTGGAGCCGCTCTCCATTTGATGCGGTCTGACCTCGAGCATTTACGATCAGTTTTCATGGCAGTGGAGAACGGCGATTTGGGCATGTTAAAATCGATCGGTATCAAAGATTCAGAGCTGGGTGACGTAAAGTTTTTCCTAGAGAAACTCGTCAACACTGGCTTCCTAGACTGAGTATCGTCCGAGCTGCCGTATAGAAGTAGCTTCTATTATTTACTACCATTAACACCGCAGATTTATTCTTATTTAGGCTCACCGGAAGGTTTCAGCTATTAAGAAACCATAATTCTATCATTCACTGTTACCAGTCAGTGAGGCATATGCCGTATGTTACCAGTGAATCTTGACGACCATAAGAAAAAAAAAAGTTATTTTACTTTATTATATCATCAGGAACATGTTTCGTTAGACTTCCGTGAGAAGAAAAGAAGTAGAGCCTGCCGTAACGATATGGAGTTTGGCGAATGAGACAAATATCAATTATGGATGACTGCTCGCTGGAAAGGAAATATTAACATA-GAAAATCAATTATTCTTTGCATGAGCAGCATTTAAGCCAATTGAAAATCCTGACACAAATCATGATCCAAACCT]
[+] EMBL BM629846 [CCGCTTCAATTAAGCAAGTTATATTCTCCTTCATGACGACCTTTAACACATAGCTTTTTTCATTGAAAAGTCGGAATTAGATTTCCTAGTTTGATATAAAATCCCAAAAAACAATACAAAAATGTTTCATTATTTAACTAAAACAAAAAAAATCCAAATATAAAACATCACAGTTATTGGAATAACATTGCAGGAGCTCCAAGCAAACACGTCTAGTTGCTTCGTTTTCGTATAGCACAGGGCAAAGCAAGTACGACAACTTCGGAGTTAGTAGCGCGTTGGCGTACCCTCGTGCCATTCGTTTATCGTGGGGTTTTTCCACTGACATTTTCCTTTTCCATTGCAAGAATGTTCTAGCTTCGCGTAGTCACATTAACATCGGCACATGACACGAACGGCTACCATTCGGCAAACGGACGGAGAACGAGCATCCTCCGTTCAACGAATAGTTTACAGTGTTACAGTGCTTTCGTTGCCCGTTGTGATTGGAGGCTGTTAAAATAGTTTAGATGTTTAGTTAAAACTTTGCGTAGTATCTCATTGCTTTACGCGTAGCAACGACCCACAAAGAAAGCAAGGTTACCATTTCCAGATATTGTGGGCTTTAAAAAGTAATCCATCCGACCTGTCTGCCCTACTGTGGGGCTACAGTTTCTACAGTGCTGGGGGGGGAAGTGTTTGTGCGCAACGA ]
[+] EMBL BM599930 [ cCGGACGGAGAACGAGCATCCTCCGTTCAACGAATAGTTTACAGTGTTACAGTGCTTTCGTTGCCCGTTGTGATTGGAGGCTGTTAAAATAGTTTAGATGTTTAGTTAAAACTTTGCGTAGTATCTCATTGCTTTACGCGTAGCAACGACCCACAAAGAAAGCAAGGTTACCATTTCCAGATATTGTGGGCTTTAAAAAGTAATCCATCCGACCTGTCTGCCCTACTGTGGGGCTACAGTTTCTACAGTGCT GTGTGGGAAGTGTTTGTGCGCAACGAAAAGATACTATTACACTGCGACAGAACATACTGCAATTTAAATACAAATCCTTGGGACAACTTCTGCTTGCCAGAGATTCCCATATTAATCATGGCTCCTACAAACTGGTTGTGGTTTGGAAACATATTTTTTGTGTCCTTCCCGTTGGCGATTTTGGGAATCGATCTAAGTAGACTCTACGGGCATATGCCAGCTGTTTCTAAGCGCAATGAGGCTTGCCATCCATACGAGCCGTTCAAGTGCCCGGGCGATGGAAATTGTATTTCCATACAGTACCTGTGCGACGGTGCGCCCGATTGCTCCGATGGGTATGACGAAGATATGCGTCTTTGTACAGCAGCAAAGCGTCCACCAGTTGAGGAAACAGCATCATTCTTACAAAGCTTGCTGGCATCACACGGTCC ]
[+] EMBL BX628420 [ ggGGAGAACGAGCATCCTCCGTTCAACGAATAGTTTACAGTGTTACAGTGCTTTCGTTGCCCGTTGTGATTGGAGGCTGTTAAAATAGTTTAGATGTTTAGTTAAAACTTTGCGTAGTATCTCATTGCTTTACGCGTAGCATCGACCCACAAAGAAAGCAAGGTTACCATTTCCAGATATTGTGGGCTTTAAAAAATAATCCATCCGACCTGTCTGCCCTACTGTGGGGCTACAGTTTCTACAGTGCT GTGTGGGCAGTGTTTGTGCGCAACGAAAAGATACTATTACACTGCGACAGAACATACTGCAATTTAAATACAAATCCTTGGGACAACTTCTGCTTGCCAGAGATTCCCATATTAATCATGGCTCCTACAAACTGGTTGTGGTTTGGAAACATATTTTTTGTGTCCTTCCCGTTGGCGATTTTGGGAATCGATCTAAGTAGACTCTACGGGCATATGCCAGCTGTTTCTAAGCGCAATGAGGCTTGCCATCCATACGAGCCGTTCAAGTGCCCGGGCGATGGAAATTGTATTTCCATACAGTACCTGTGCGACGGTGCGCCCGATTGCTCCGATGGGTATGACGAAGAT ]
[+] EMBL BM656389 [ ccgGTGTTTGTGCGCAACGAAAAGATACTATTACACTGCGACAGAACATACTGCAATTTAAATACAAATCCTTGGGACAACTTCTGCTTGCCAGAGATTCCCATATTAATCATGGCTCCTACAAACTGGTTGTGGTTTGGAAACATATTTTTTGTGTCCTTCCCGTTGGCGATATTGGGAATCGATCTAAGTAGACTCTACGGGCATATGCCAGCTGTTTCTAAGCGCAATGAGGCTTGCCATCCATACGAGCCGTTCAAGTGCCCGGGCGATGGAAATTGTATTTCCATACAGTACCTGTGCGACGGTGCGCCCGATTGCTCCGATGGGTATGACGAAGATATGCGTCTTTGTACAGCAGCAAAGCGTCCACCAGTTGAGGAAACAGCATCATTCTTACAAAGCTTGCTGGCATCACACGGTCCTAACTATCTGGAAAAATTATTCGGCAGTAAAGCGCGTGACGCATTAGCACCACTTGGTGGTGTGGAAAAAGTGGCCATTGCTCTCAGTGAATCGCAAACCATCGAAGATTTTGGAGCCGCTCTCCATTTGATGCGGTCTGACCTCGAGCATTTACGATCAGTTTTCATGGCAGTGGAGAACGGCGATTTGGGCA ]
[+] EMBL BM640159 [ ccgCGGCAGTAAAGCGCGTGACGCATTAGCACCACTTGGTGGTGTGGAAAAAGTGGCCATTGCTCTCAGTGAATCGCAAACCATCGAAGATTTTGGAGCCGCTCTCCATTTGATGCGGTCTGACCTCGAGCATTTACGATCAGTTTTCATGGCAGTGGAGAACGGCGATTTGGGCATGTTAAAATCGATCGGTATCAAAGATTCAGAGCTGGGTGACGTAAAGTTTTTCCTAGAGAAACTCGTCAACACTGGCTTCCTAGACTGAGTATCGTCCGAGCTGCCGTATAGAAGTAGCTTCTATTATTTACTACCATTAACACCGCAGATTTATTCTTATTTAGGCTCACCGGAAGGTTTCAGCTATTAAGAAACCATAATTCTATCATTCACTGTTACCAGTCAGTGAGGCATATGCCGTATGTTACCAGTGAATCTTGACGACCATAAGAAAAAAAAAAGTTATTTTACTTTATTATATCATCAGGAACATGTTTCGTTAGACTTCCGTGAGAAGAAAAGAAGTAGAGCCTGCCGTAACGATATGGAGTTTGGCGAATGAGACAAATATCAATTATGGATGACTGCTCGCTGGAAAGGAAATATTAACATA GAAAATCAATTATTCTTTGCATGAGCAGCATTTAAGCCAATTGAAAATCCTGACACAAATCATGATCCAAACCT]
[+] EMBL BM618752 [ ccgCAAAGATTCAGAGCTGGGTGACGTAAAGTTTTTCCTAGAGAAACTCGTCAACACTGGCTTCCTAGACTGAGTATCGTCCGAGCTGCCGTATAGAAGTAGCTTCTATTATTTACTACCATTAACACCGCAGATTTATTCTTATTTAGGCTCACCGGAAGGTTTCAGCTATTAAGAAACCATAATTCTATCATTCACTGTTACCAGTCAGTGAGGCATATGCCGTATGTTACCAGTGAATCTTGACGACCATAAG AAAAAAAAAGTTATTTTACTTTATTATATCATCAGGAACATGTTTCGTTAGACTTCCGTGAGAAGAAAAGAAGTAGAGCCTGCCGTAACGATATGGAGTTTGGCGAATGAGACAAATATCAATTATGGATGACTGCTCGCTGGAAAGG AATATTAACATAGGAAAATCAATTATTCTTTGCATGA ]
consensusID : consensus_7631#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence
[CCCAGGCNTTACGGCTACATTCGGCAAACGGACGGAGAACGAGCATCTCCGTTCAACGAATAGTTTACAGTGTTACAGTGCTTTCGTTGCCCGTTGTGATTGGAGGCTGTTAAAATAGTTTAGATGTTTAGTTAAAACTTTGCGTAGTATCTCATTGCTTTACGCGTAGCATCGACCCACAAAGAAAGCAAGGTTACCATTTCCAGATATTGTGGGCTTTAAAAAATAATCCATCCGACCTGTCTGCCCTACTGTGGGGCTACAGTTTCTACAGTGCTGTGTGGGCAGTGTTTGTGCGCAACGAAAAGATACTATTACACTGCGACAGAACATACTGCAATTTAAATACAAATCCTTGGGACAACTTCTGCTTGCCAGAGATTCCCATATTAATCATGGCTCCTACAAACTGGTTGTGGTTTGGAAACATATTTTTTGTGTCCTTCCCGTTGGCGATTTTGGGAATCGATCTAAGTAGACTCTACGGGCATATGCCAGCTGTTTCTAAGCGCAATGAGGCTTGCCATCCATACGAGCC]
[+] EMBL AL932858 [CCCAGGCNTTACGGCTACATTCGGCAAACGGACGGAGAACGAGCATCTCCGTTCAACGAATAGTTTACAGTGTTACAGTGCTTTCGTTGCCCGTTGTGATTGGAGGCTGTTAAAATAGTTTAGATGTTTAGTTAAAACTTTGCGTAGTATCTCATTGCTTTACGCGTAGCATCGACCCACAAAGAAAGCAAGGTTACCATTTCCAGATATTGTGGGCTTTAAAAAATAATCCATCCGACCTGTCTGCCCTACTGTGGGGCTACAGTTTCTACAGTGCTGTGTGGGCAGTGTTTGTGCGCAACGAAAAGATACTATTACACTGCGACAGAACATACTGCAATTTAAATACAAATCCTTGGGACAACTTCTGCTTGCCAGAGATTCCCATATTAATCATGGCTCCTACAAACTGGTTGTGGTTTGGAAACATATTTTTTGTGTCCTTCCCGTTGGCGATTTTGGGAATCGATCTAAGTAGACTCTACGGGCATATGCCAGCTGTTTCTAAGCGCAATGAGGCTTGCCATCCATACGAGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7631#0 CCGCTTCAATTAAGCAAGTTATATTCTCCTTCATGACGACCTTTAACACATAGCTTTTTT 60
consensus_7631#1 ------------------------------------------------------------
consensus_7631#0 CATTGAAAAGTCGGAATTAGATTTCCTAGTTTGATATAAAATCCCAAAAAACAATACAAA 120
consensus_7631#1 ------------------------------------------------------------
consensus_7631#0 AATGTTTCATTATTTAACTAAAACAAAAAAAATCCAAATATAAAACATCACAGTTATTGG 180
consensus_7631#1 ------------------------------------------------------------
consensus_7631#0 AATAACATTGCAGGAGCTCCAAGCAAACACGTCTAGTTGCTTCGTTTTCGTATAGCACAG 240
consensus_7631#1 ------------------------------------------------------------
consensus_7631#0 GGCAAAGCAAGTACGACAACTTCGGAGTTAGTAGCGCGTTGGCGTACCCTCGTGCCATTC 300
consensus_7631#1 ------------------------------------------------------------
consensus_7631#0 GTTTATCGTGGGGTTTTTCCACTGACATTTTCCTTTTCCATTGCAAGAATGTTCTAGCTT 360
consensus_7631#1 ------------------------------------------------------------
consensus_7631#0 CGCGTAGTCACATTAACATCGGCACATGACACGAACGGCTACCATTCGGCAAACGGACGG 420
consensus_7631#1 ------------------------CCCAGGCNTTACGGCTAC-ATTCGGCAAACGGACGG 35
* ******** *****************
consensus_7631#0 AGAACGAGCATCCTCCGTTCAACGAATAGTTTACAGTGTTACAGTGCTTTCGTTGCCCGT 480
consensus_7631#1 AGAACGAGCATC-TCCGTTCAACGAATAGTTTACAGTGTTACAGTGCTTTCGTTGCCCGT 94
************ ***********************************************
consensus_7631#0 TGTGATTGGAGGCTGTTAAAATAGTTTAGATGTTTAGTTAAAACTTTGCGTAGTATCTCA 540
consensus_7631#1 TGTGATTGGAGGCTGTTAAAATAGTTTAGATGTTTAGTTAAAACTTTGCGTAGTATCTCA 154
************************************************************
consensus_7631#0 TTGCTTTACGCGTAGCAACGACCCACAAAGAAAGCAAGGTTACCATTTCCAGATATTGTG 600
consensus_7631#1 TTGCTTTACGCGTAGCATCGACCCACAAAGAAAGCAAGGTTACCATTTCCAGATATTGTG 214
***************** ******************************************
consensus_7631#0 GGCTTTAAAAAGTAATCCATCCGACCTGTCTGCCCTACTGTGGGGCTACAGTTTCTACAG 660
consensus_7631#1 GGCTTTAAAAAATAATCCATCCGACCTGTCTGCCCTACTGTGGGGCTACAGTTTCTACAG 274
*********** ************************************************
consensus_7631#0 TGCTGTGTGGGAAGTGTTTGTGCGCAACGAAAAGATACTATTACACTGCGACAGAACATA 720
consensus_7631#1 TGCTGTGTGGGCAGTGTTTGTGCGCAACGAAAAGATACTATTACACTGCGACAGAACATA 334
*********** ************************************************
consensus_7631#0 CTGCAATTTAAATACAAATCCTTGGGACAACTTCTGCTTGCCAGAGATTCCCATATTAAT 780
consensus_7631#1 CTGCAATTTAAATACAAATCCTTGGGACAACTTCTGCTTGCCAGAGATTCCCATATTAAT 394
************************************************************
consensus_7631#0 CATGGCTCCTACAAACTGGTTGTGGTTTGGAAACATATTTTTTGTGTCCTTCCCGTTGGC 840
consensus_7631#1 CATGGCTCCTACAAACTGGTTGTGGTTTGGAAACATATTTTTTGTGTCCTTCCCGTTGGC 454
************************************************************
consensus_7631#0 GATTTTGGGAATCGATCTAAGTAGACTCTACGGGCATATGCCAGCTGTTTCTAAGCGCAA 900
consensus_7631#1 GATTTTGGGAATCGATCTAAGTAGACTCTACGGGCATATGCCAGCTGTTTCTAAGCGCAA 514
************************************************************
consensus_7631#0 TGAGGCTTGCCATCCATACGAGCCGTTCAAGTGCCCGGGCGATGGAAATTGTATTTCCAT 960
consensus_7631#1 TGAGGCTTGCCATCCATACGAGCC------------------------------------ 538
************************
consensus_7631#0 ACAGTACCTGTGCGACGGTGCGCCCGATTGCTCCGATGGGTATGACGAAGATATGCGTCT 1020
consensus_7631#1 ------------------------------------------------------------
consensus_7631#0 TTGTACAGCAGCAAAGCGTCCACCAGTTGAGGAAACAGCATCATTCTTACAAAGCTTGCT 1080
consensus_7631#1 ------------------------------------------------------------
consensus_7631#0 GGCATCACACGGTCCTAACTATCTGGAAAAATTATTCGGCAGTAAAGCGCGTGACGCATT 1140
consensus_7631#1 ------------------------------------------------------------
consensus_7631#0 AGCACCACTTGGTGGTGTGGAAAAAGTGGCCATTGCTCTCAGTGAATCGCAAACCATCGA 1200
consensus_7631#1 ------------------------------------------------------------
consensus_7631#0 AGATTTTGGAGCCGCTCTCCATTTGATGCGGTCTGACCTCGAGCATTTACGATCAGTTTT 1260
consensus_7631#1 ------------------------------------------------------------
consensus_7631#0 CATGGCAGTGGAGAACGGCGATTTGGGCATGTTAAAATCGATCGGTATCAAAGATTCAGA 1320
consensus_7631#1 ------------------------------------------------------------
consensus_7631#0 GCTGGGTGACGTAAAGTTTTTCCTAGAGAAACTCGTCAACACTGGCTTCCTAGACTGAGT 1380
consensus_7631#1 ------------------------------------------------------------
consensus_7631#0 ATCGTCCGAGCTGCCGTATAGAAGTAGCTTCTATTATTTACTACCATTAACACCGCAGAT 1440
consensus_7631#1 ------------------------------------------------------------
consensus_7631#0 TTATTCTTATTTAGGCTCACCGGAAGGTTTCAGCTATTAAGAAACCATAATTCTATCATT 1500
consensus_7631#1 ------------------------------------------------------------
consensus_7631#0 CACTGTTACCAGTCAGTGAGGCATATGCCGTATGTTACCAGTGAATCTTGACGACCATAA 1560
consensus_7631#1 ------------------------------------------------------------
consensus_7631#0 GAAAAAAAAAAGTTATTTTACTTTATTATATCATCAGGAACATGTTTCGTTAGACTTCCG 1620
consensus_7631#1 ------------------------------------------------------------
consensus_7631#0 TGAGAAGAAAAGAAGTAGAGCCTGCCGTAACGATATGGAGTTTGGCGAATGAGACAAATA 1680
consensus_7631#1 ------------------------------------------------------------
consensus_7631#0 TCAATTATGGATGACTGCTCGCTGGAAAGGAAATATTAACATAGAAAATCAATTATTCTT 1740
consensus_7631#1 ------------------------------------------------------------
consensus_7631#0 TGCATGAGCAGCATTTAAGCCAATTGAAAATCCTGACACAAATCATGATCCAAACCT 1797
consensus_7631#1 ---------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||