These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7646#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1933 fasta sequence [TTTTTTCTACACATCTTTTACTATATATACTAATAATATAATATCACGAAGACAACGTTCAAACTTCCAAAATAATTTCTAGCGTAGTGTAAGGGTTGAATATAGATGCCACTATACAATTCTGGTGTTAATTTAAAAACTTGGTATTAGACTTATCTACTTCATTTCAATTAATTAATCATCTGCTTCACCGCACGCCGCAGTATCTTCCCGGACGGCGTCATCGGGAAACTGTCCACGAACCGCACCCCGCCCCGCAGCCGCTTGAAGTCCGCCACCTGCTCCTCGACATGCCGCACAATGTCCTCCTCGCGCAGCGGTGCCGCACCACCACCACCACCGCCCACCTTTCGCTCGACCACCGCCATCGGGAGATCGCTCGAACCGTCCGGCGCCGGCACACCGATCACGCACACCTGCTTCACCCCGTCCATGCGCTGTATGATGCACTCCAGATCGGACGGCGACACCTGGTAGTTGTTGTACTTGATGATGTCCTTGATGCGATCGACCACGTACAGGCTGCCGTCCGCATCGATGTACCCGATGTCGCCGCTCCGGAAGAACCCGTCCTCGGTCAGTGCGTTCGCGGTCGCTTCCGGATTGTGCAGGTAACCCAGAAACATGTACCGATGGCGTAGTACAAGCTCGCCGGCAACTCCTACCCCGACCGGTTGGCCATCCTCATCCAACACCCGGCACTGGACGTTCGTGGTGAGCGGACCGACCGAGCCCGGCTTCACCGTGACGTCATTGCGCGTGATAAACCCAATCTCGGAGCTGCCGTAGATGGAGCGCGTGTGCCCCTGGGGAAGCAGCTTCTGCAGGCGCAGTGTCATTTCCGTCGGTACGCGGGAACCACCGAGCTGCCACTGGCGAACGCTGCTCAGATCGGCCCGGTCAGTGCGAGGGTGGGCCAGCAGGGTCGACACGTACGAGGGAGGGGTGAACAGATTCTCGATGCGATACGTTTCAATCAGATCGAGCAGCAGGTCCGGCTGGTAGGGTTTGCTGGTGAGAACGCGCGGCCGGCTGTGCAGCAGCGAGGTCATCACGGCAAAGATGCCGGTCGCCCAGAACAGCGAGCTAAAGTTGAAGATGGGACCGTCGGAAGCGTCGCTACAATATGGAAACGGAGCGGTCGATTAGAATCTTATTAGATTATTAACGGAGCAAAGACTTACGTGGAAAAGACCATTCCATCGACAAAGTGCGCGTGCGACAGACAGACACCCTTGGGCAGGCCGGTCGTGCCGGATGAGCACAGCACCATCGCCAGCAGCTTGGATGCGTCGCCCAAATACTCCGCCCGAAAGCACTCCTTCCCCGTCGATCGGTTCCAGCAGCTCGTCCACCGACCGATGAACCCCCTCCGCTGCCGGTCCCATCGCGAACAGTTGTGCACCGTGCGTAATCGCTTCGTGGACCGCTGGGCCGCACCACGCCCGCATTGGCCGGATCGCAAAACACCAGCCCCGATTGCGTTTGCTTCATCATGTGCACAAAGTCGGCCTTCTCGAACACGGGCGCAAGGGGATTGACGGCCAGCCCCAGTACCCAGCAGCCGATCAGCACCGGCACAACCTGCTCGCCGTTGCCGCAGGCAAGGCTGACAAAGTCACCGCGCCGGTAACCAAGGCGACGCAGGTGCAGTGCGACCCGAACGATGCGCCGCCTCATCTCGCCGCACGTCGTTTGCCGGCCCGTGTCGGCATTGATCTGGATGACGCGGTCGGGCGAGCGGGCGAGCACATCGAGCACGATGCGGCCAATACCGGCGGCCGGATTTAGCACGGACGGTAAGCTTTCACCGTACCACGTCTGTTCGGTTGGGTTGTAATGACTTTGCATCGTTTTGTTTTTTGTTTTTGCTAGGGAGAGCGCACACTGGTTTGGATGGACACACACTTTAACGACCGGACACAGCGACCGG] [+] EMBL AGA283361 [TTTTTTCTACACATCTTTTACTATATATACTAATAATATAATATCACGAAGACAACGTTCAAACTTCCAAAATAATTTCTAGCGTAGTGTAAGGGTTGAATATAGATGCCACTATACAATTCTGGTGTTAATTTAAAAACTTGGTATTAGACTTATCTACTTCATTTCAATTAATTAATCATCTGCTTCACCGCACGCCGCAGTATCTTCCCGGACGGCGTCATCGGGAAACTGTCCACGAACCGCACCCCGCCCCGCAGCCGCTTGAAGTCCGCCACCTGCTCCTCGACATGCCGCACAATGTCCTCCTCGCGCAGCGGTGCCGCACCACCACCACCACCGCCCACCTTTCGCTCGACCACCGCCATCGGGAGATCGCTCG ] [-] EMBL BM651721 [ CTACACATCTTTTACTATATATACTAATAATATAATATCACGAAGACAACGTTCAAACTTCCAAAATAATTTCTAGCGTAGTGTAAGGGTTGAATATAGATGCCACTATACAATTCTGGTGTTAATTTAAAAACTTGGTATTAGACTTATCTACTTCATTTCAATTAATTAATCATCTGCTTCACCGCACGCCGCAGTATCTTCCCGGACGGCGTCATCGGGAAACTGTCCACGAACCGCACCCCGCCCCGCAGCCGCTTGAAGcgg ] [-] EMBL BX610102 [ CACGCCGCAGTATCTTCCCGGACGGCGTCATCGGGAAACTGTCCACGAACCGCACCCCGCCCCGCAGCCGCTTGAAGTCCGCCACCTGCTCCTCGACATGCCGCACAATGTCCTCCTCGCGCAGCGGTGCCGCACCACCACCACCACCGCCCACCTTTCGCTCGACCACCGCCATCGGCAGATCGCTCGAACCGTCCGGCGCCGGCACACCGATCACGCACACCTGCTTCACCCCGTCCATGCGCTGTATGATGCACTCCAGATCGGACGGCGACACCTGGTAGTTGTTGTACTTGATGATGTCCTTGATGCGATCGACCACGTACAGGCTGCCGTCCGCATCGATGTACCCGATGTCGCCGCTCCGGAAGAACCCGTCCTCGGTCAGTGCGTTCGCGGTCGCTTCCGGATTGTGCAGGTAACCCAGAAACATGTACCGATGGCGTAGTACAAGCTCGCCGGCAACTCCTACCCCGACCGGTTGGCCATCCTCATCCAACACCCGGCACTGGACGTTCGTGGTGAGCGGACCGACCGAGCCCGGCTTCACCGTGACGTCATTGCGCGTGATAAACCCAATCTCGGAGCTGCCGTAGA ] [+] EMBL BM589761 [ ccgCCGGCTTCACCGTGACGTCATTGCGCGTGATAAACCCAATCTCGGAGCTGCCGTAGATGGAGCGCGTGTGCCCCTGGGGAAGCAGCTTCTGCAGGCGCAGTGTCATTTCCGTCGGTACGCGGGAACCACCGAGCTGCCACTGGCGAACGCTGCTCAGATCGGCCCGGTCAGTGCGAGGGTGGGCCAGCAGGGTCGACACGTACGAGGGAGGGGTGAACAGATTCTCGATGCGATACGTTTCAATCAGATCGAGCAGCAGGTCCGGCTGGTAGGGTTTGCTGGTGAGAACGCGCGGCCGGCTGTGCAGCAGCGAGGTCATCACGGCAAAGATGCCGGTCGCCCAGAACAGCGAGCTAAAGTTGAAGATGGGACCGTCGGAAGCGTCGCTACAATATGGAAACGGAGCGGTCGATTAGAATCTTATTAGATTATTAACGGAGCAAAGACTTACGTGGAAAAGACCATTCCATCGACAAAGTGCGCGTGCGACAGACAGACACCCTTGGGCAGGCCGGTCGTGCCGGATGAGCACAGCACCATCGCCAGCAGCTTGGATGCGTCGCCCAAATACTCCGCCCGAAAGCACTCCTTCCCCGTCGATCGGTTCCAGCAGCT ] [-] EMBL AGA284653 [ TGCGACAGACAGACACCCTTGGGCAGGCCGGTCGTGCCGGATGAGCACAGCACCATCGCCAGCAGCTTGGATGCGTCGCCCAAATACTCCGCCCGAAAGCACTCC TCCCCGTCGATCGGTTCCAGCAGCTCGTCCACCGACCGATGAACCCCCTCCGCTGCCGGTCCCATCGCGAACAGTTGTGCACCGTGCGTAATCGCTTCGTGGACCGCTGGGCCGCACCACGCCCGCATTG ] [-] EMBL BM601835 [ CCGACCGATGAACCCCCTCCGCTGCCGGTCCCATCGCGAACAGTTGTGCACCGTGCGTAATCGCTTCGTGGACCGCT TCCCGCACCACGCCCGCATTGGCCGGATCGCAAAACACCAGCCCCGATTGCGTTTGCTTCATCATGTGCACAAAGTCGGCCTTCTCGAACACGGGCGCAAGGGGATTGACGGCCAGCCCCAGTACCCAGCAGCCGATCAGCACCGGCACAACCTGCTCGCCGTTGCCGCAGGCAAGGCTGACAAAGTCACCGCGCCGGTAACCAAGGCGACGCAGGTGCAGTGCGACCCGAACGATGCGCCGCCTCATCTCGCCGCACGTCGTTTGCCGGCCCGTGTCGGCATTGATCTGGATGACGCGGTCGGGCGAGCGGGCGAGCACATCGAGCACGATGCGGCCAATACCGGCGGCCGGATTTAGCACGGACGGTAAGCTTTCACCGTACCACGTCTGTTCGGTTGGGTTGTAATGACTTTGCATCGTTTTGTTTTTTGTTTTTGCTAGGGAGAGCGCACACTGGTTTGGATGGACACACACTTTAACGACCGGACACAGCGACCGG] consensusID : consensus_7646#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence [ACCCAGAAACATGTACCGATGGCGTAGTACAAGCTCGCCGGCAACTCCTACCCCGACCGGTTGGCCATCCTCATCCAACACCCGGCACTGGACGTTCGTGGTGAGCGGACCGACCGAGCCCGGCTTCACCGTGACGTCATTGCGCGTGATAAACCCAATCTCGGAGCTGCCGTAGATGGAGCGCGTGTGCCCCTGGGGAAGCAGCTTCTGCAGGCGCAGTGTCATTTCCGTCGGTACGCGGGAACCACCGAGCTGCCACTGCCGAACGCTGCTCAGATCGGCCCGGGCAGTGCGAGGGTGGGCCAGCAGGGTCGACACGTACGAGGGAGGGGTGAACAGATTCTCGATGCGATACGTTTCAATCAGATCGAGCAGCAGGTCCGGCTGGTAGGGTTTGCTGGTGAGAACGCGCGGCCGGCTGTGCAGCAGCGAGGTCATCACGGCAAAGATGCCGGTCGCCCAGAACAGCGAGCTAAAGTTGAAGATGGGACCGTCGGAAGCGTCGGTGGAAAAGACCATTCCATCGACAAAGTGCGCGTGCGACAGACAGACACCCTTGGGCAGCCCGGTCGT] [-] EMBL BX614667 [ACCCAGAAACATGTACCGATGGCGTAGTACAAGCTCGCCGGCAACTCCTACCCCGACCGGTTGGCCATCCTCATCCAACACCCGGCACTGGACGTTCGTGGTGAGCGGACCGACCGAGCCCGGCTTCACCGTGACGTCATTGCGCGTGATAAACCCAATCTCGGAGCTGCCGTAGATGGAGCGCGTGTGCCCCTGGGGAAGCAGCTTCTGCAGGCGCAGTGTCATTTCCGTCGGTACGCGGGAACCACCGAGCTGCCACTGCCGAACGCTGCTCAGATCGGCCCGGGCAGTGCGAGGGTGGGCCAGCAGGGTCGACACGTACGAGGGAGGGGTGAACAGATTCTCGATGCGATACGTTTCAATCAGATCGAGCAGCAGGTCCGGCTGGTAGGGTTTGCTGGTGAGAACGCGCGGCCGGCTGTGCAGCAGCGAGGTCATCACGGCAAAGATGCCGGTCGCCCAGAACAGCGAGCTAAAGTTGAAGATGGGACCGTCGGAAGCGTCGGTGGAAAAGACCATTCCATCGACAAAGTGCGCGTGCGACAGACAGACACCCTTGGGCAGCCCGGTCGT] consensusID : consensus_7646#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 222 fasta sequence [ATCATCTGCTTCACCGCACGCCGCAGTATCTTCCCGGACGGCGTCATCGGGAAGCTGTCCACGAACCGCACCCCGCCCCGCAGTCGCTTAAAGTCCGCCACTTGCCCCGCGACATGCCGCACAATGTCCTCCTCCCGCAGCGGCGTCACGCCGCCCACTTTCCGCTCGACCACCGCCATCGGCAGATCGCTAGAACCGTCCGGCGCCGGCACACCGATCACG] [-] EMBL BM618229 [ATCATCTGCTTCACCGCACGCCGCAGTATCTTCCCGGACGGCGTCATCGGGAAGCTGTCCACGAACCGCACCCCGCCCCGCAGTCGCTTAAAGTCCGCCACTTGCCCCGCGACATGCCGCACAATGTCCTCCTCCCGCAGCGGCGTCACGCCGCCCACTTTCCGCTCGACCACCGCCATCGGCAGATCGCTAGAACCGTCCGGCGCCGGCACACCGATCACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7646#0 TTTTTTCTACACATCTTTTACTATATATACTAATAATATAATATCACGAAGACAACGTTC 60 consensus_7646#1 ------------------------------------------------------------ consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 AAACTTCCAAAATAATTTCTAGCGTAGTGTAAGGGTTGAATATAGATGCCACTATACAAT 120 consensus_7646#1 ------------------------------------------------------------ consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 TCTGGTGTTAATTTAAAAACTTGGTATTAGACTTATCTACTTCATTTCAATTAATTAATC 180 consensus_7646#1 ------------------------------------------------------------ consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 ATCTGCTTCACCGCACGCCGCAGTATCTTCCCGGACGGCGTCATCGGGAAACTGTCCACG 240 consensus_7646#1 ------------------------------------------------------------ consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 AACCGCACCCCGCCCCGCAGCCGCTTGAAGTCCGCCACCTGCTCCTCGACATGCCGCACA 300 consensus_7646#1 ------------------------------------------------------------ consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 ATGTCCTCCTCGCGCAGCGGTGCCGCACCACCACCACCACCGCCCACCTTTCGCTCGACC 360 consensus_7646#1 ------------------------------------------------------------ consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 ACCGCCATCGGGAGATCGCTCGAACCGTCCGGCGCCGGCACACCGATCACGCACACCTGC 420 consensus_7646#1 ------------------------------------------------------------ consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 TTCACCCCGTCCATGCGCTGTATGATGCACTCCAGATCGGACGGCGACACCTGGTAGTTG 480 consensus_7646#1 ------------------------------------------------------------ consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 TTGTACTTGATGATGTCCTTGATGCGATCGACCACGTACAGGCTGCCGTCCGCATCGATG 540 consensus_7646#1 ------------------------------------------------------------ consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 TACCCGATGTCGCCGCTCCGGAAGAACCCGTCCTCGGTCAGTGCGTTCGCGGTCGCTTCC 600 consensus_7646#1 ------------------------------------------------------------ consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 GGATTGTGCAGGTAACCCAGAAACATGTACCGATGGCGTAGTACAAGCTCGCCGGCAACT 660 consensus_7646#1 --------------ACCCAGAAACATGTACCGATGGCGTAGTACAAGCTCGCCGGCAACT 46 consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 CCTACCCCGACCGGTTGGCCATCCTCATCCAACACCCGGCACTGGACGTTCGTGGTGAGC 720 consensus_7646#1 CCTACCCCGACCGGTTGGCCATCCTCATCCAACACCCGGCACTGGACGTTCGTGGTGAGC 106 consensus_7646#2 -----ATCATCTGCTTCACCGCACGCCGCAGTATCTTCCCGGACGGCGTCATCGGGAAGC 55 * * * ** ** * * * * * * *** ** *** consensus_7646#0 GGACCGACCGAGCCCGGCTTCACCGTGACGTCATTGCGCGTGATAAACCCAATCTCGGAG 780 consensus_7646#1 GGACCGACCGAGCCCGGCTTCACCGTGACGTCATTGCGCGTGATAAACCCAATCTCGGAG 166 consensus_7646#2 TGTCCA--CGAACCGCACCCCGCCCCGCAGTCGCTTAAAGTCCGCCACTTGCCCCGCGAC 113 * ** *** ** * * ** * *** * ** ** * ** consensus_7646#0 CTGCCGTAGATGGAGCGCGTGTGCCCCTGGGGAAGCAGCTTCTGCAGGCGCAGTGTCATT 840 consensus_7646#1 CTGCCGTAGATGGAGCGCGTGTGCCCCTGGGGAAGCAGCTTCTGCAGGCGCAGTGTCATT 226 consensus_7646#2 ATGCCGCACA--------ATGTCCTCCTCCCGCAGCGGCGTC-----ACGCCGCCCACTT 160 ***** * * *** * *** * *** ** ** *** * ** consensus_7646#0 TCCGTCGGTACGCGGGAACCACCGAGCTGCCACTGGCGAACGCTGCT--CAGATCGGCCC 898 consensus_7646#1 TCCGTCGGTACGCGGGAACCACCGAGCTGCCACTGCCGAACGCTGCT--CAGATCGGCCC 284 consensus_7646#2 TCCGCTCGACCACCGCCATCGGCAGATCGCTAGAACCGTCCGGCGCCGGCACACCGATCA 220 **** * * * * * * * ** * ** ** ** ** * ** * consensus_7646#0 GGTCAGTGCGAGGGTGGGCCAGCAGGGTCGACACGTACGAGGGAGGGGTGAACAGATTCT 958 consensus_7646#1 GGGCAGTGCGAGGGTGGGCCAGCAGGGTCGACACGTACGAGGGAGGGGTGAACAGATTCT 344 consensus_7646#2 CG---------------------------------------------------------- 222 * consensus_7646#0 CGATGCGATACGTTTCAATCAGATCGAGCAGCAGGTCCGGCTGGTAGGGTTTGCTGGTGA 1018 consensus_7646#1 CGATGCGATACGTTTCAATCAGATCGAGCAGCAGGTCCGGCTGGTAGGGTTTGCTGGTGA 404 consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 GAACGCGCGGCCGGCTGTGCAGCAGCGAGGTCATCACGGCAAAGATGCCGGTCGCCCAGA 1078 consensus_7646#1 GAACGCGCGGCCGGCTGTGCAGCAGCGAGGTCATCACGGCAAAGATGCCGGTCGCCCAGA 464 consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 ACAGCGAGCTAAAGTTGAAGATGGGACCGTCGGAAGCGTCGCTACAATATGGAAACGGAG 1138 consensus_7646#1 ACAGCGAGCTAAAGTTGAAGATGGGACCGTCGGAAGCGTCG------------------- 505 consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 CGGTCGATTAGAATCTTATTAGATTATTAACGGAGCAAAGACTTACGTGGAAAAGACCAT 1198 consensus_7646#1 ----------------------------------------------GTGGAAAAGACCAT 519 consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 TCCATCGACAAAGTGCGCGTGCGACAGACAGACACCCTTGGGCAGGCCGGTCGTGCCGGA 1258 consensus_7646#1 TCCATCGACAAAGTGCGCGTGCGACAGACAGACACCCTTGGGCAGCCCGGTCGT------ 573 consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 TGAGCACAGCACCATCGCCAGCAGCTTGGATGCGTCGCCCAAATACTCCGCCCGAAAGCA 1318 consensus_7646#1 ------------------------------------------------------------ consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 CTCCTTCCCCGTCGATCGGTTCCAGCAGCTCGTCCACCGACCGATGAACCCCCTCCGCTG 1378 consensus_7646#1 ------------------------------------------------------------ consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 CCGGTCCCATCGCGAACAGTTGTGCACCGTGCGTAATCGCTTCGTGGACCGCTGGGCCGC 1438 consensus_7646#1 ------------------------------------------------------------ consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 ACCACGCCCGCATTGGCCGGATCGCAAAACACCAGCCCCGATTGCGTTTGCTTCATCATG 1498 consensus_7646#1 ------------------------------------------------------------ consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 TGCACAAAGTCGGCCTTCTCGAACACGGGCGCAAGGGGATTGACGGCCAGCCCCAGTACC 1558 consensus_7646#1 ------------------------------------------------------------ consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 CAGCAGCCGATCAGCACCGGCACAACCTGCTCGCCGTTGCCGCAGGCAAGGCTGACAAAG 1618 consensus_7646#1 ------------------------------------------------------------ consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 TCACCGCGCCGGTAACCAAGGCGACGCAGGTGCAGTGCGACCCGAACGATGCGCCGCCTC 1678 consensus_7646#1 ------------------------------------------------------------ consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 ATCTCGCCGCACGTCGTTTGCCGGCCCGTGTCGGCATTGATCTGGATGACGCGGTCGGGC 1738 consensus_7646#1 ------------------------------------------------------------ consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 GAGCGGGCGAGCACATCGAGCACGATGCGGCCAATACCGGCGGCCGGATTTAGCACGGAC 1798 consensus_7646#1 ------------------------------------------------------------ consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 GGTAAGCTTTCACCGTACCACGTCTGTTCGGTTGGGTTGTAATGACTTTGCATCGTTTTG 1858 consensus_7646#1 ------------------------------------------------------------ consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 TTTTTTGTTTTTGCTAGGGAGAGCGCACACTGGTTTGGATGGACACACACTTTAACGACC 1918 consensus_7646#1 ------------------------------------------------------------ consensus_7646#2 ------------------------------------------------------------ consensus_7646#0 GGACACAGCGACCGG 1933 consensus_7646#1 --------------- consensus_7646#2 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||