These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7648#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1209 fasta sequence [CAGAATCGCACGAGGTGNATTCTCCGAACAAAAAATAAAGCACAAAAGCCCCCAAAATGGTCCGCACCAAGGTGTCCCGTGCGGCTACCAAGCGCGGTCAGAACAGTTCCGACTCGAAGCTGTACATTGAGATGAAGCTGCGCGATTTCGACGTCATATCCGATTGCCATCTGACCAACATCGAGCTCAAGTTCCAGAACGATATGGACCGGCTGAACCGGGCGTTTGAGGTGATGCGTTCGCGCATCCCCAAAAACTTGCTCTCCCTCACGATGGGCGAGCTGCGCGCATTGCAAAAA-GCAACGGAAGAGC-TGAA-CACTTCG--CCACAGCTGAATCAAACGGTTAGCGCTAACATGAGCGCCCTGCTGGAGAAATCTTGTCGCAAAAAGTCCAAAGACGATGAGGAGAGCGAGCAGGGCGACACGTACCGGATGGGATCGCTCAAGCCGTCGTCTAAGGCACGCTTTGGCCCGCTGATGTCGGCCAGAACACGGCGCCGCAGCAAATCTACCAGCGCGATCGCGACACCGACCGTAAACCGCACGCTGTTCCTGCCCCAGAGTGCAATGGCCGGACGACTGCAGCAGCCAGGATCGACCGTGAAAGCCCTTACAGCGACCGCAGTAGCACCACCACCGCCGGGTTCGGAACGTACTTCCCGTTCGAAGCTGAAGAGCTCGCTCGCAACCAATCGCCCCAAAGCGATCAGTGCCGATCGGGGGTACGGTGTGATCACGCCAAAGGTACAACCGTACGCCGCCCTGGCAATGATCCGGCACGCGAAACAGGGCGAGTCGGTGTTCTCGCTCACGGGCAGTCCGGTCGTTACCGCGAACATGCTGGAGTCAAGCGCCAACGTGAATATCCCCGTGTCCAACGGTATGATTGCCATCAGACCGACCGAGCTGGACGTGATCGATGAATCGCTCATACGCAAGATCGACCCGAACGTGCTGATGGAGCTGAAGCAGCTGCAAACGAATCTGGACAAAATTATGAGCACGCTTAACCTTTCCTGAGAAGAGCGAGCCACTCAGCCGCCGTGTAAGTGTAGTAGTTTTCCGGGGGCCCTTTTTTCTACTATTAGTTTTTGACACACATCAACGTCGTGTTTTATGTTGATAAATCATTTCTCTCTGTCTCGTATTAGTATTATAAGCTATTTTATTCAGACTGAATAAACGTACCAATTTGAATCACTAAAAAAAA] [+] EMBL BX469455 [CAGAATCGCACGAGGTGNATTCTCCGAACAAAAAATAAAGCACAAAAGCCCCCAAAATGGTCCGCACCAAGGTGTCCCGTGCGGCTACCAAGCGCGGTCAGAACAGTTCCGACTCGAAGCTGTACATTGAGATGAAGCTGCGCGATTTCGACGTCATATCCGATTGCCATCTGACCAACATCGAGCTCAAGTTCCAGAACGATATGGACCGGCTGAACCGGGCGTTTGAGGTGATGCGTTCGCGCATCCCCAAAAACTTGCTCTCCCTCACGATGGGCGAGCTGCGCGCATTGCAAAAAGGCAACGGAAGAGCGTGAAGCACTTCGGCCCACAGCTGAATCAAACGGTTAGCGCTAACATGAGCGCCCTG ] [+] EMBL BX621172 [ CGATGGGCGAGCTGCGCGCATTGCAAAAA GCAACGGAAGAGC TGAA CACTTCG CCACAGCTGAATCAAACGGTTAGCGCTAACATGAGCGCCCTGCTGGAGAAATCTTGTCGCAAAAAGTCCAAAGACGATGAGGAGAGCGAGCAGGGCGACACGTACCGGATGGGATCGCTCAAGCCGTCGTCTAAGGCACGCTTTGGCCCGCTGATGTCGGCCAGAACACGGCGCCGCAGCAAATCTACCAGCGCGATCGCGACACCGACCGTAAACCGCACGCTGTTCCTGCCCCAGAGTGCAATGGCCGGACGACTGCAGCAGCCAGGATCGACCGTGAAAGCCCTTACAGCGACCGCAGTAGCACCACCACCGCCGGGTTCGGAACGTACTTCCCGTTCGAAGCTGAAGAGCTCGCTCGCAACCAATCGCCCCAAAGCGATCAGTGCCGATCGGGGGTACGGTGTGATCACGCCAAAGGTACAACCGTACGCCGCCCTGGCAATGATCCGGCACGCGAAACAGGGCGAGTCGGTGTTCTCGCTCACGGGCAGTCCGGTCGTTACCGCGAACATGCTGGAGTCAAGCGCCAACGTGAATATCCCCGTGTCCAACGGTATGATTGCCATCAGACCGACCGAGCTGGACGTGATCGATGAATCGCTCATACGTAAGATCGACCCGAACGTGCTGATGGAGCTGAAGCAGCTGCAAACGAATCTGGAC AAATTATGAGCACGCTTTACCTTTCCTGANAAGAGCGAGCCGCT ] [+] EMBL BX621484 [ AAAAGTCCAAAGACGATGAGGAGAGCGAACAGGGCGACACGTACCGGATGGGATCGCTCAAGCCGTCGTCTAAGGCACGCTTTGGCCCGCTGATGTCGGCCAGAACACGGCGCCGCAGCAAATCTACCAGCGCGATCGCGACACCGACCGTAAACCGCACGCTGTTCCTGCCCCAGAGTGCAATGGCCGGACGACTGCAGCAGCCAGGATCGACCGTGAAAGCCCTTACAGCGACCGCAGTAGCACCACCACCGCCGGGTTCGGAACGTACTTCCCGTTCGAAGCTGAAGAGCTCGCTCGCAACCAATCGCCCCAAAGCGATCAGTGCCGATCGGGGGTACGGTGTGATCACGCCAAAGGTACAACCGTACGCCGCCCTGGCAATGATCCGGCACGCGAAACAGGGCGAGTCGGTGTTCTCGCTCACGGGCAGTCCGGTCGTTACCGCGAACATGCTGGAGTCAAGCGCCAACGTGAATATCCCCGTGTCCAACGGTATGATTGCCATCAGACCGACCGAGCTGGACGTGATCGATGAATCGCTCATACGCAAGATCGACCCGAACGTGCTGATGGAGCTGAAGCAGCTGCAAACGAATCTGGACAAAATTATGAGCACGCTTAACCTTTCCTGAGAAGAGCGAGCCACTCAGCCGCCGTGTAAGTGTAGTAGTTTTCCGGGGGGCCTTTTTTCTACTATTAGTTTTTG ] [-] EMBL AGA284235 [ GTTACCGCGAACATGCTGGAGTCAAGCGCCAACGTGAATATCCCCGTGTCCAACGGTATGATTGCCATCAGACCGACCGAGCTGGACGTGATCGATGAATCGCTCATACGCAAGATCGACCCGAACGTGCTGATGGAGCTGAAGCAGCTGCAAACGAATCTGGACAAAATTATGAGCACGCTTAACCTTTCCTGAGAAGAGCGAGCCACTCAGCCGCCGTGTAAGTGTAGTAGTTTTCCGGGGGCCCTTTTTTCTACTATTAGTTTTTGACACACATCAACGTCGTGTTTTATGTTGATAAATCATTTCTCTCTGTCTCGTATTAGTATTATAAGCTATTTTATTCAGACTGAATAAACGTACCAATTTGAATCACTAAAAAAAA] [+] EMBL AGA281129 [ TTATGAGCACGCTTAACCTTTCCTGAGAAGAGCGAGCCACTCAGCCGCCGTGTAAGTGTAGTAGTTTTCCGGGGGCCCTTTTTTCTACTATTAGTTTTTGACACACATCAACGTCGTGTTTTATGTTGATAAATCAT ] [-] EMBL AGA282757 [ TATGAGCACGCTTAACCTTTCCTGAGAAGAGCGAGCCACTCAGCCGCCGTGTAAGTGTAGTAGTTTTCCGGGGGCCCTTTTTTCTACTATTAGTTTTTGACACACATCAACGTCGTGTTTTATGTTG ] consensusID : consensus_7648#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 751 fasta sequence [CCGAGCGAACCCTCCCTGCATCAAAGACGCGCTTGGAAAGTGAGTAAAGTTTTCTCCGAACAAAAAATACAGCACAAAAGCCCCCAAAATGGTCCGCACCAAGGTGTCCCGTGCGGCTACCAAGCGCGGTCAGAACAGCTCCGACTCGAAGCTGTACATTGAGATGAAGCTGCGCGATTTCGACGTCATATCCGATTGCCATCTGACCAACATCGAGCTCAAGTTCCAGAACGATATGGACCGGCTGAACCGGGCGTTTGAGGTGATGCGTTCGCGCATCCCCAAAAACTTGCTCACCCTCACGATGGGCGAGCTGCGCGCATTGCAAAAAGCAACGGAAGAGCTGAACACTTCGCCACAGCTGAATCAAACGGTGAGCGCTAACATGAGCGCCCTGCTGGAGAAATCTTGTCGCAAAAAGTCCAAAGACGATGGTTACCTTACAGAGGAGAGCGAACAGGGCGACACGTACCGGATGGGATCGCTCAAGCCGTCGTCTAAGGCACGCTTTGGCCCGCTGATGTCGGCCAGAACACGGCGCCGCAGCAAATCTACCAGCGCGATCGCGACACCGACCGTAAACCGCACGCTGTTCCTAGCCCCAGAGTGCAATGGCCGGACGACTGCAGCAGCCAGGATCGACCGTGAAAGCCCTTACAGCGACCGCAGTAGCACCACCCACCGCCGGGTTCGGAACGTACTTCCCGTTCGAAGCTGAAGAGCTCGCTCGCAACCAATCGCCCCAAAGCGA] [+] EMBL BM586013 [CCGAGCGAACCCTCCCTGCATCAAAGACGCGCTTGGAAAGTGAGTAAAGTTTTCTCCGAACAAAAAATACAGCACAAAAGCCCCCAAAATGGTCCGCACCAAGGTGTCCCGTGCGGCTACCAAGCGCGGTCAGAACAGCTCCGACTCGAAGCTGTACATTGAGATGAAGCTGCGCGATTTCGACGTCATATCCGATTGCCATCTGACCAACATCGAGCTCAAGTTCCAGAACGATATGGACCGGCTGAACCGGGCGTTTGAGGTGATGCGTTCGCGCATCCCCAAAAACTTGCTCACCCTCACGATGGGCGAGCTGCGCGCATTGCAAAAAGCAACGGAAGAGCTGAACACTTCGCCACAGCTGAATCAAACGGTGAGCGCTAACATGAGCGCCCTGCTGGAGAAATCTTGTCGCAAAAAGTCCAAAGACGATGGTTACCTTACAGAGGAGAGCGAACAGGGCGACACGTACCGGATGGGATCGCTCAAGCCGTCGTCTAAGGCACGCTTTGGCCCGCTGATGTCGGCCAGAACACGGCGCCGCAGCAAATCTACCAGCGCGATCGCGACACCGACCGTAAACCGCACGCTGTTCCTAGCCCCAGAGTGCAATGGCCGGACGACTGCAGCAGCCAGGATCGACCGTGAAAGCCCTTACAGCGACCGCAGTAGCACCACCCACCGCCG ] [+] EMBL AGA285535 [ CCAAAGACGATGGTTACCTTACAGAGGAGAGCGAACAGGGCGACACGTACCGGATGGGATCGCTCAAGCCGTCGTCTAAGGCACGCTTTGGCCCGCTGATGTCGGCCAGAACACGGCGCCGCAGCAAATCTACCAGCGCGATCGCGACACCGACCGTAAACCGCACGCTGTTCCT GCCCCAGAGTGCAATGGCCGGACGACTGCAGCAGCCAGGATCGACCGTGAAAGCCCTTACAGCGACCGCAGTAGCACCA CCACCGCCGGGTTCGGAACGTACTTCCCGTTCGAAGCTGAAGAGCTCGCTCGCAACCAATCGCCCCAAAGCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7648#0 --------------------------------CAGAATCGCACGAGGTGNATTCTCCGAA 28 consensus_7648#1 CCGAGCGAACCCTCCCTGCATCAAAGACGCGCTTGGAAAGTGAGTAAAGTTTTCTCCGAA 60 * * * * * ********* consensus_7648#0 CAAAAAATAAAGCACAAAAGCCCCCAAAATGGTCCGCACCAAGGTGTCCCGTGCGGCTAC 88 consensus_7648#1 CAAAAAATACAGCACAAAAGCCCCCAAAATGGTCCGCACCAAGGTGTCCCGTGCGGCTAC 120 ********* ************************************************** consensus_7648#0 CAAGCGCGGTCAGAACAGTTCCGACTCGAAGCTGTACATTGAGATGAAGCTGCGCGATTT 148 consensus_7648#1 CAAGCGCGGTCAGAACAGCTCCGACTCGAAGCTGTACATTGAGATGAAGCTGCGCGATTT 180 ****************** ***************************************** consensus_7648#0 CGACGTCATATCCGATTGCCATCTGACCAACATCGAGCTCAAGTTCCAGAACGATATGGA 208 consensus_7648#1 CGACGTCATATCCGATTGCCATCTGACCAACATCGAGCTCAAGTTCCAGAACGATATGGA 240 ************************************************************ consensus_7648#0 CCGGCTGAACCGGGCGTTTGAGGTGATGCGTTCGCGCATCCCCAAAAACTTGCTCTCCCT 268 consensus_7648#1 CCGGCTGAACCGGGCGTTTGAGGTGATGCGTTCGCGCATCCCCAAAAACTTGCTCACCCT 300 ******************************************************* **** consensus_7648#0 CACGATGGGCGAGCTGCGCGCATTGCAAAAAGCAACGGAAGAGCTGAACACTTCGCCACA 328 consensus_7648#1 CACGATGGGCGAGCTGCGCGCATTGCAAAAAGCAACGGAAGAGCTGAACACTTCGCCACA 360 ************************************************************ consensus_7648#0 GCTGAATCAAACGGTTAGCGCTAACATGAGCGCCCTGCTGGAGAAATCTTGTCGCAAAAA 388 consensus_7648#1 GCTGAATCAAACGGTGAGCGCTAACATGAGCGCCCTGCTGGAGAAATCTTGTCGCAAAAA 420 *************** ******************************************** consensus_7648#0 GTCCAAAGACGATG------------AGGAGAGCGAGCAGGGCGACACGTACCGGATGGG 436 consensus_7648#1 GTCCAAAGACGATGGTTACCTTACAGAGGAGAGCGAACAGGGCGACACGTACCGGATGGG 480 ************** ********** *********************** consensus_7648#0 ATCGCTCAAGCCGTCGTCTAAGGCACGCTTTGGCCCGCTGATGTCGGCCAGAACACGGCG 496 consensus_7648#1 ATCGCTCAAGCCGTCGTCTAAGGCACGCTTTGGCCCGCTGATGTCGGCCAGAACACGGCG 540 ************************************************************ consensus_7648#0 CCGCAGCAAATCTACCAGCGCGATCGCGACACCGACCGTAAACCGCACGCTGTTCCT-GC 555 consensus_7648#1 CCGCAGCAAATCTACCAGCGCGATCGCGACACCGACCGTAAACCGCACGCTGTTCCTAGC 600 ********************************************************* ** consensus_7648#0 CCCAGAGTGCAATGGCCGGACGACTGCAGCAGCCAGGATCGACCGTGAAAGCCCTTACAG 615 consensus_7648#1 CCCAGAGTGCAATGGCCGGACGACTGCAGCAGCCAGGATCGACCGTGAAAGCCCTTACAG 660 ************************************************************ consensus_7648#0 CGACCGCAGTAGCACCACC-ACCGCCGGGTTCGGAACGTACTTCCCGTTCGAAGCTGAAG 674 consensus_7648#1 CGACCGCAGTAGCACCACCCACCGCCGGGTTCGGAACGTACTTCCCGTTCGAAGCTGAAG 720 ******************* **************************************** consensus_7648#0 AGCTCGCTCGCAACCAATCGCCCCAAAGCGATCAGTGCCGATCGGGGGTACGGTGTGATC 734 consensus_7648#1 AGCTCGCTCGCAACCAATCGCCCCAAAGCGA----------------------------- 751 ******************************* consensus_7648#0 ACGCCAAAGGTACAACCGTACGCCGCCCTGGCAATGATCCGGCACGCGAAACAGGGCGAG 794 consensus_7648#1 ------------------------------------------------------------ consensus_7648#0 TCGGTGTTCTCGCTCACGGGCAGTCCGGTCGTTACCGCGAACATGCTGGAGTCAAGCGCC 854 consensus_7648#1 ------------------------------------------------------------ consensus_7648#0 AACGTGAATATCCCCGTGTCCAACGGTATGATTGCCATCAGACCGACCGAGCTGGACGTG 914 consensus_7648#1 ------------------------------------------------------------ consensus_7648#0 ATCGATGAATCGCTCATACGCAAGATCGACCCGAACGTGCTGATGGAGCTGAAGCAGCTG 974 consensus_7648#1 ------------------------------------------------------------ consensus_7648#0 CAAACGAATCTGGACAAAATTATGAGCACGCTTAACCTTTCCTGAGAAGAGCGAGCCACT 1034 consensus_7648#1 ------------------------------------------------------------ consensus_7648#0 CAGCCGCCGTGTAAGTGTAGTAGTTTTCCGGGGGCCCTTTTTTCTACTATTAGTTTTTGA 1094 consensus_7648#1 ------------------------------------------------------------ consensus_7648#0 CACACATCAACGTCGTGTTTTATGTTGATAAATCATTTCTCTCTGTCTCGTATTAGTATT 1154 consensus_7648#1 ------------------------------------------------------------ consensus_7648#0 ATAAGCTATTTTATTCAGACTGAATAAACGTACCAATTTGAATCACTAAAAAAAA 1209 consensus_7648#1 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||