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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7652#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1137 fasta sequence
[GATCCCCCGAGGTTTGACGACATGGCGGAGAAGTGTATTGTGAACATCGAATCTTTGAATCTAGCAGAATATAGCTTTGTTTGTCAAGTAGTGAATCAAACATTCTCCATTGGATTGAAACCGGAAGAACATTTTAATCTTCATCCCGGATATTTGCACCTTGCAAAAACGTATCTCTGTCGCGTGTATTATTCCCTTCAACTCTCCGGTATTGGAAACATCCTGTTCCTAACATCCCGGAGCGGAAGTAACAACTTAACAATGGATTGGGACATCGTTGACATCTCTAATTTCCTCCCCGAGAACCAGGAGCTAGACATTGGCATTCAATCAATCCTGCTGAGGGAATCGAGCTTCATCACAACACTTCCACATGCTGAGGACGAATCTTCAGAATGCCACAACACACCAATGATCCATTCATCTTCATCTTGGAAGCCTTCTAAATGCATATCTCCAGCGTCGGAGCTTCGTGATTCCCACCAGTTGTCCGACACAATGTCCTGTTTAGAGGAGATGGAAGTACCACACGACATGTGCGAGGAACCCAACGAAAGTTTGAATAAGGCTGCCGTTCCCATTTCACCTCCAGACAACTGCTCCAGAGA-CAACAACAACCTGCAGCCGAGGGACGAAAGGCCTTTCCGGTGTGCCATCTGTCCCAAGGCGTTCCGGCTTTCCTCCACACTGTCCGCACACAAGAAGCTGCACGACCAAAGAGGACCCGGTCTACGGTGTGAGACGTGTGGACGAGCCTTCACGCAACCCAGCGCTCTCTCCAGCCATCGACTGTTGCATCGGTCGGATCGGCCACACAGCTGCAGTCTCTGTGAAAAGCAGTTCGTTCGGCTGCATGCCCTCAAGACACACGTGCTTAGTCACGCGAACGAACGACCCTACGAGTGTGACCAGTGTGGAAAAGCTTTTACCGAAAAGCACGTGCTCGTACGCCATCGCAAGACGCACAGTGACGACCGGCCCCATGAGTGTGCCGTTTGCTCGAAGACCTTCAAGGAGCGGTATGACCTGCTGCGCCACACACTCATTCACAGTGGACTGCGGCCGCACAAGTGTCCCGATTGCTCCAAAACCTTCGTCCAATCCAATGCACTGGTTAAGCATCGAAAGTGTCACGAA]
[+] EMBL AL697364 [GATCCCCCGAGGTTTGACGACATGGCGGAGAAGTGTATTGTGAACATCGAATCTTTGAATCTAGCAGAATATAGCTTTGTTTGTCAAGTAGTGAATCAAACATTCTCCATTGGATTGAAACCGGAAGAACATTTTAATCTTCATCCCGGATATTTGCACCTTGCAAAAACGTATCTCTGTCGCGTGTATTATTCCCTTCAACTCTCCGGTATTGGAAACATCCTGTTCCTAACATCCCGGAGCGGAAGTAACAACTTAACAATGGATTGGGACATCGTTGACATCTTTAATTTCC ACCGGAGAACCAGGAGCTAGACATTGGCATTCAATCAATCCTGCTGAGGGAATCGAGCTTCATCANAACACTTCCACAGGCTGAGGACGAATCTTCAGAATGCCACAA ACACCAATGATCCATTCTTCTTTATCTTGGAAGCCTTCTAAATGCATATCTCCAGCGTCGGAGCTTCGTGATTCCCACCAGTTGTCCGACACAACGTCCTGTTTAGAGGAGATGGAAGTACTACGCGACATGTTCGAGGAACCCAACGACAGTTTGAACAAGGCTGCCGTTCCTATTTCA CTCCAGACAA TGCTCCAGAGACCAACAACAA CTGCAG CGAGGGACGAAAGGCCTTTCCGGTGTGCCATCTGTCCCAAGGC ]
[+] EMBL BX610658 [ GATTGGGACATCGTTGACATCTCTAATTTCCTCCCCGAGAACCAGGAGCTAGACATTGGCATTCAATCAATCCTGCTGAGGGAATCGAGCTTCATCACAACACTTCCACATGCTGAGGACGAATCTTCAGAATGCCACAACACACCAATGATCCATTCATCTTCATCTTGGAAGCCTTCTAAATGCATATCTCCAGCGTCGGAGCTTCGTGATTCCCACCAGTTGTCCGACACAATGTCCTGTTTAGAGGAGATGGAAGTACCACACGACATGTGCGAGGAACCCAACGAAAGTTTGAATAAGGCTGCCGTTCCCATTTCACCTCCAGACAACTGCTCCAGAGA CAACAACAACCTG ]
[+] EMBL BX610657 [ ATCGTTGACATCTCTAATTTCCTCCCCGAGAACCAGGAGCTAGACATTGGCATTCAATCAATCCTGCTGAGGGAATCGAGCTTCATCACAACACTTCCACATGCTGAGGACGAATCTTCAGAATGCCACAACACACCAATGATCCATTCATCTTCATCTTGGAAGCCTTCTAAATGCATATCTCCAGCGTCGGAGCTTCGTGATTCCCACCAGTTGTCCGACACAATGTCCTGTTTAGAGGAGATGGAAGTACCACACGACATGTGCGAGGAACCCAACGAAAGTTTGAATAAGGCTGCCGTTCCCATTTCACCTCCAGACAACTGCTCCAGAGA CAACAACAACCTGCAGCCGAGGGACGAAAGGCCTTTCCGGTGTGCCATCTGTCCCAAGGCGTTCCGGCTTTCCTCCACACTGTCCGCACACAAGAAGCTGCACGACCAAAGAGGACCCGGTCTACGGTGTGAGACGTGTGGACGAGCCTTCACGCAACCCA ]
[+] EMBL BX610659 [ CGTTGACATCTCTAATTTCCTCCCCGAGAACCAGGAGCTAGACATTGGCATTCAATCAATCCTGCTGAGGGAATCGAGCTTCATCACAACACTTCCACATGCTGAGGACGAATCTTCAGAATGCCACAACACACCAATGATCCATTCATCTTCATCTTGGAAGCCTTCTAAATGCATATCTCCAGCGTCGGAGCTTCGTGATTCCCACCAGTTGTCCGACACAATGTCCTGTTTAGAGGAGATGGAAGTACCACACGACATGTGCGAGGAACCCAACGAAAGTTTGAATAAGGCTGCCGTTCCCATTTCACCTCCAGACAACT ]
[+] EMBL BX609637 [ CATATCTCCAGCGTCGGAGCTTCGTGATTCCCACCAGTTGTCCGACACAACGTCCTGTTTAGAGGAGATGGAAGTACTACGCGACATGTTCGAGGAACCCAACGACAGTTTGAACAAGGCTGCCGTTCCTATTTCACCTCCAGACAACTGCTCCAGAGA CAACAACAACCTGCAGCCGAGGGACGAAAGGCCTTTCCGGTGTGCCATCTGTCCCAAGGCGTTCCGGCTTTCCTCCACACTGTCCGCACACAAGAAGCTGCACGATCAAAGAGGACCCAGTCTACGGTGTGAGACGTGTGGACGAGCCTTCACGCAACCCAGCGCTCTCTCCAGCCATCGACTGTTGCATCGGTCGGATCGGCCACACAGCTGCAGTCTCTGTGAAAAGCAGTTCGTTCGGCTGCATGCCCTCAAGACACACGTGCTTAGTCACGCGAACGAACGACCCTACGAGTGTGACCAGTGTGGAAAAGCTTTTACCGAAAAGCACGTGCTCGTACGCCATCGCAAGACGCACAGTGACGACCGGCCCCATGAGTGTGCCGTTTGCTCGAAGACCTTCAAGGAGCGGTATGACCTGCTGCGCCACACACTCATTCACAGTGGACTGCGGCCGCACAAGTGTCCCGATTGCTCCAAAACCTTCGTCCAATCCAATGCACTGGTTAAGCATCGAAAGTGTCACGAA]
[+] EMBL BX610825 [ TCGGAGCTTCGTGATTCCCACCAGTTGTCCGACACAATGTCCTGTTTAGAGGAGATGGAAGTACCACACGACATGTGCGAGGAACCCAACGAAAGTTTGAATAAGGCTGCCGTTCCCATTTCACCTCCAGACAACTGCTCCAGAGA CAACAACAACCTGCAGCCGAGGGACGAAAGGCCTTTCCGGTGTGCCATCTGTCCCAAGGCGTTCCGGCTTTCCTCCACACTGTCCGCACACAAGAAGCTGCACGACCAAAGAGGACCCGGT ]
consensusID : consensus_7652#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 813 fasta sequence
[TGCATGCTGAAGATATATTCCAATAGGGATTCATTCCAATCACTCCATTTCCCGACGGCATTTGATGTCTGTAATCAGTTGTTGTGAATAATATTGTTTGTGTTTCAGATCTCCAGCGTTGGAGCTTCGTGATTCCCACCAGTTGTTCGACACAATGTCCTGTTTAGAGGAGATGGAAGTAGAACGCGACATGTTCGGAGAATCCAGCGACACCTTGCAAAAGGCTGCCGTTCCCATTTCACCTCCAGACAACTGCTCCAGGGATTCTAGTCTGCGTGACAAACAACTCCACACTGACAACAACAACCTCCAGCCGAGGGACGAAAGGCCTTTCCGGTGTGCCATCTGTCCCAAGGCGTTCCGACTTTCCTCCACACTGTCCGCCCACAAGAAGCTGCACGACCAAAGAGGACCCAGTCTACGGTGTGAGACGTGTGGACGAGCCTTCACGCAACCCAGCGCTCTCTCGAGCCATCGACTGCTGCATCGGTCGCATCGGCCACACAGCTGCAGTCTCTGTGGAAAGCAGTTCGTTCGGCTGCATGCCCTCAAGACACACGTGCTTAGTCACGCGAACGAACGACCCTACGAGTGTGACCTGTGTGGAAAAGCTTTTACCGAAAAGCACGTGCTCGTACGCCATCGCAAGACGCACAGTAACGAGCGACCCCATGAGTGTGCCGATTGCTCGAAGGNCTTCAAGGAGCGGTATGACCTGCTGCGCCACACGCTCATTCACAGTGGACTGCGGCCGCACAAGTGTCCGATTGCTCCAAAACCTTCGTCCAATCCAATGCACTGGTTAAACATCGA]
[+] EMBL BX625372 [TGCATGCTGAAGATATATTCCAATAGGGATTCATTCCAATCACTCCATTTCCCGACGGCATTTGATGTCTGTAATCAGTTGTTGTGAATAATATTGTTTGTGTTTCAGATCTCCAGCGTTGGAGCTTCGTGATTCCCACCAGTTGTTCGACACAATGTCCTGTTTAGAGGAGATGGAAGTAGAACGCGACATGTTCGGAGAATCCAGCGACACCTTGCAAAAGGCTGCCGTTCCCATTTCACCTCCAGACAACTGCTCCAGGGATTCTAGTCTGCGTGACAAACAACTCCACACTGACAACAACAACCTCCAGCCGAGGGACGAAAGGCCTTTCCGGTGTGCCATCTGTCCCAAGGCGTTCCGACTTTCCTCCACACTGTCCGCCCACAAGAAGCTGCACGACCAAAGAGGACCCAGTCTACGGTGTGAGACGTGTGGACGAGCCTTCACGCAACCCAGCGCTCTCTCGAGCCATCGACTGCTGCATCGGTCGCATCGGCCACACAGCTGCAGTCTCTGTGGAAAGCAGTTCGTTCGGCTGCATGCCCTCAAGACACACGTGCTTAGTCACGCGAACGAACGACCCTACGAGTGTGACCTGTGTGGAAAAGCTTTTACCGAAAAGCACGTGCTCGTACGCCATCGCAAGACGCACAGTAACGAGCGACCCCATGAGTGTGCCGATTGCTCGAAGGNCTTCAAGGAGCGGTATGACCTGCTGCGCCACACGCTCATTCACAGTGGACTGCGGCCGCACAAGTGTCCGATTGCTCCAAAACCTTCGTCCAATCCAATGCACTGGTTAAACATCGA]
consensusID : consensus_7652#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 227 fasta sequence
[TGATTCAAACAAGTTGTCCGACACAACGTCTTGTTTAGAGGAGATGGAAGTACTACGCGACATGTTCGAGGAACGAAACGACAGTTTGAACAAGGGTGCGGTTCGTATTTCACGTCTAGAAAACTGCTCAAGAGACAACAACAACTTGCAGCAGAGGGACGAAAGGCTTTTCGGGTGTGCGATCTGTCTAAAGGGGTTCGGGCTTTTTTCAACACTGTCTGCACACA]
[+] EMBL BX613093 [TGATTCAAACAAGTTGTCCGACACAACGTCTTGTTTAGAGGAGATGGAAGTACTACGCGACATGTTCGAGGAACGAAACGACAGTTTGAACAAGGGTGCGGTTCGTATTTCACGTCTAGAAAACTGCTCAAGAGACAACAACAACTTGCAGCAGAGGGACGAAAGGCTTTTCGGGTGTGCGATCTGTCTAAAGGGGTTCGGGCTTTTTTCAACACTGTCTGCACACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7652#0 GATCCCCCGAGGTTTGACGACATGGCGGAGAAGTGTATTGTGAACATCGAATCTTTGAAT 60
consensus_7652#2 ------------------------------------------------------------
consensus_7652#1 ------------------------------------------------------------
consensus_7652#0 CTAGCAGAATATAGCTTTGTTTGTCAAGTAGTGAATCAAACATTCTCCATTGGATTGAAA 120
consensus_7652#2 ------------------------------------------------------------
consensus_7652#1 ------------------------------------------------------------
consensus_7652#0 CCGGAAGAACATTTTAATCTTCATCCCGGATATTTGCACCTTGCAAAAACGTATCTCTGT 180
consensus_7652#2 ------------------------------------------------------------
consensus_7652#1 ------------------------------------------------------------
consensus_7652#0 CGCGTGTATTATTCCCTTCAACTCTCCGGTATTGGAAACATCCTGTTCCTAACATCCCGG 240
consensus_7652#2 ------------------------------------------------------------
consensus_7652#1 ------------------------------------------------------------
consensus_7652#0 AGCGGAAGTAACAACTTAACAATGGATTGGGACATCGTTGACATCTCTAATTTCCTCCCC 300
consensus_7652#2 ------------------------------------------------------------
consensus_7652#1 ------------------------------------------------------------
consensus_7652#0 GAGAACCAGGAGCTAGACATTGGCATTCAATCAATCCTGCTGAGGGAATCGAGCTTCATC 360
consensus_7652#2 ------------------------------------------------------------
consensus_7652#1 -----------------------------------------TGCATGCTGAAGATATATT 19
consensus_7652#0 ACAACACTTCCACATGCTGAGGACGAATCTTCAGAATGCCACAACACACCAATGATCCAT 420
consensus_7652#2 ------------------------------------------------------------
consensus_7652#1 CCAATAGGGATTCATTCCAATCACTCCATTTCCCGACGGCATTTGATGTCTGTAATCAGT 79
consensus_7652#0 TCATCTTCATCTTGGAAGCCTTCTAAATGCATATCTCCAGCGTCGGAGCTTCGTGATTCC 480
consensus_7652#2 -----------------------------------------------------TGATTCA 7
consensus_7652#1 TGTTGTGAAT---AATATTGTTTGTGTTTCAGATCTCCAGCGTTGGAGCTTCGTGATTCC 136
******
consensus_7652#0 CACCAGTTGTCCGACACAATGTCCTGTTTAGAGGAGATGGAAGTACCACACGACATGTGC 540
consensus_7652#2 AACAAGTTGTCCGACACAACGTCTTGTTTAGAGGAGATGGAAGTACTACGCGACATGTTC 67
consensus_7652#1 CACCAGTTGTTCGACACAATGTCCTGTTTAGAGGAGATGGAAGTAGAACGCGACATGTTC 196
** ****** ******** *** ********************* ** ******** *
consensus_7652#0 GAGGAACCCAACGAAAGTTTGAATAAGGCTGCCGTTCCCATTTCACCTCCAGACAACTGC 600
consensus_7652#2 GAGGAACGAAACGACAGTTTGAACAAGGGTGCGGTTCGTATTTCACGTCTAGAAAACTGC 127
consensus_7652#1 GGAGAATCCAGCGACACCTTGCAAAAGGCTGCCGTTCCCATTTCACCTCCAGACAACTGC 256
* *** * *** * *** * **** *** **** ******* ** *** ******
consensus_7652#0 TCCAGAGA---------------------------------CAACAACAACCTGCAGCCG 627
consensus_7652#2 TCAAGAGA---------------------------------CAACAACAACTTGCAGCAG 154
consensus_7652#1 TCCAGGGATTCTAGTCTGCGTGACAAACAACTCCACACTGACAACAACAACCTCCAGCCG 316
** ** ** ********** * **** *
consensus_7652#0 AGGGACGAAAGGCCTTTCCGGTGTGCCATCTGTCCCAAGGCGTTCCGGCTTTCCTCCACA 687
consensus_7652#2 AGGGACGAAAGGCTTTTCGGGTGTGCGATCTGTCTAAAGGGGTTCGGGCTTTTTTCAACA 214
consensus_7652#1 AGGGACGAAAGGCCTTTCCGGTGTGCCATCTGTCCCAAGGCGTTCCGACTTTCCTCCACA 376
************* **** ******* ******* **** **** * **** ** ***
consensus_7652#0 CTGTCCGCACACAAGAAGCTGCACGACCAAAGAGGACCCGGTCTACGGTGTGAGACGTGT 747
consensus_7652#2 CTGTCTGCACACA----------------------------------------------- 227
consensus_7652#1 CTGTCCGCCCACAAGAAGCTGCACGACCAAAGAGGACCCAGTCTACGGTGTGAGACGTGT 436
***** ** ****
consensus_7652#0 GGACGAGCCTTCACGCAACCCAGCGCTCTCTCCAGCCATCGACTGTTGCATCGGTCGGAT 807
consensus_7652#2 ------------------------------------------------------------
consensus_7652#1 GGACGAGCCTTCACGCAACCCAGCGCTCTCTCGAGCCATCGACTGCTGCATCGGTCGCAT 496
consensus_7652#0 CGGCCACACAGCTGCAGTCTCTGTGAAAAGCAGTTCGTTCGGCTGCATGCCCTCAAGACA 867
consensus_7652#2 ------------------------------------------------------------
consensus_7652#1 CGGCCACACAGCTGCAGTCTCTGTGGAAAGCAGTTCGTTCGGCTGCATGCCCTCAAGACA 556
consensus_7652#0 CACGTGCTTAGTCACGCGAACGAACGACCCTACGAGTGTGACCAGTGTGGAAAAGCTTTT 927
consensus_7652#2 ------------------------------------------------------------
consensus_7652#1 CACGTGCTTAGTCACGCGAACGAACGACCCTACGAGTGTGACCTGTGTGGAAAAGCTTTT 616
consensus_7652#0 ACCGAAAAGCACGTGCTCGTACGCCATCGCAAGACGCACAGTGACGACCGGCCCCATGAG 987
consensus_7652#2 ------------------------------------------------------------
consensus_7652#1 ACCGAAAAGCACGTGCTCGTACGCCATCGCAAGACGCACAGTAACGAGCGACCCCATGAG 676
consensus_7652#0 TGTGCCGTTTGCTCGAAGACCTTCAAGGAGCGGTATGACCTGCTGCGCCACACACTCATT 1047
consensus_7652#2 ------------------------------------------------------------
consensus_7652#1 TGTGCCGATTGCTCGAAGGNCTTCAAGGAGCGGTATGACCTGCTGCGCCACACGCTCATT 736
consensus_7652#0 CACAGTGGACTGCGGCCGCACAAGTGTCCCGATTGCTCCAAAACCTTCGTCCAATCCAAT 1107
consensus_7652#2 ------------------------------------------------------------
consensus_7652#1 CACAGTGGACTGCGGCCGCACAAGTGTCC-GATTGCTCCAAAACCTTCGTCCAATCCAAT 795
consensus_7652#0 GCACTGGTTAAGCATCGAAAGTGTCACGAA 1137
consensus_7652#2 ------------------------------
consensus_7652#1 GCACTGGTTAAACATCGA------------ 813
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||