These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7653#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 818 fasta sequence [GAGAAAACAACACACATATTTACATCCACAACTTATCAGCCCAACTTCGTCACCGTGCTGTTATCGTACGCCCTCCCACATATTCCTTCCGGGCGGATCGTATAGTC-AAA---------CGC-----G-----ACTATTCTCCTTCGTCCGTTTAGTGTTTGTGTGATATAGACGATCGTTCGCAAGCAAATGCAAAGATGCTGGTGCTAGTGCTAGGTGACCTACACATTCCCCACCGGTGCAGCAGTGTTCCGGCCAAGTTTAAGAAGCTGCTCGTACCGGGGCGCATCCATCACATCCTCTGCACCGGGAACCTGTGCAGTAAGGAATCGTACGACTATCTCAAAACGCTCGCCAACGATGTGCACATTGTGCGCGGAGACTTTGACGAAAACACCAACTACCCGGAGCAGAAGGTAGTGACGGTCGGACAGTTCCGGATCGGGCTGTCGCACGGCCACCAGGTAGTGCCGTGGGGTGACCCGGAAGCGCTCGCCCTCATCCAGCGGCAGCTCGACGTGGACATACTGATCTCGGGCCACACGCACAAGTTCGAAGCGTACGAGCACGAGAACAAGTTCTACATCAATCCGGGTTCGGCGACCGGTTCCTACAATCCGCTGGACACCGCCGTCA-TTCCGTCCTTTGTGCTGATGGACATCCAGAGCACGACGGTCGT-GACGTACGTGTACCAGCTGGTGGGCGAC-GACGTTAAGGTGGAACGGATCGAGTATAAGAAGAATTGAAGAGGCAAACAAACCGCCAGCCATTTCGAGCACACGGCCGACCGTTCGGCAGAGTGCGACAAAATAGGACGTTAATCGAATAACAACAGA] [+] EMBL BX628568 [GAGAAAACAACACACATATTTACATCCACAACTTATCAGCCCAACTTCGTCACCGTGCTGTTATCGTACGCCCTCCCACATATTCCTTCCGGGCGGATCGTATAGTC AAA CGC G ACTATTCTCCTTCGTCCGTTTAGTGTTTGAGTGATATAGACGATCGTTCGCAAGCAAATGCAAAGATGCTGGTGCTAGTGCTAGGTGACCTACACATTCCCCACCGGTGCAGCAGTGTTCCGGCCAAGTTTAAGAAGCTGCTCGTACCGGGGCGCATCCATCACATCCTCTGCACCGGGAACCTGTGCAGTAAGGAATCGTACGACTATCTCAAAACGCTCGCCAACGATGTGCACATTGTGCGCGGAGACTTTGACGAAAACACCAACTACCCGGAGCAGAAGGTAGTGACGGTCGGACAGTTCCGGATCGGGCTGTCGCACGGCCACCAGGTAGTGCCGTGGGGTGACCCGGAAGCGCTCGCCCTCATCCAGCGGCAGCTCGACGTGG ATACTGATCTCGGGCCACACGCACAAGTTCGAAGCGTACGAGCACGAGAACAAGTTCTACATCAATCCGGGTTCGGCGACCGGTTCCTACAATCCGCTGGACACCGCCGTCA TTCCGTCCTTTGTGCTGATGGACATCCAGAGCACGACGGTCGT GACGTACGTGTACCAGCTGGTGGGCGAC GACGTTAAGGTGGAACGGATCGAGTATAAGAAGAATTGAAGAGG ] [+] EMBL BX626544 [ ACTTATCAGCCCAACTTCGTCACCGTGCTGTTATCGTACGCCCTCCCACATATTCCTTCCGGGCGGATCGTATAGTCTAAAGCTACTTGTCCC C ACTATTATCCTTCGTCCGTTTAGTGTTTGTGTGATATAGACGATCGTTCGCAAGCAAATGCAAAGATGCTGGTGCTAGTGCTAGGTGACCTACACATTCCCCACCGGTGCAGCAGTGTTCCGGCCAAGTTTAAGAAGCTGCTCGTACCGGGGCGCATCCATCACATCCTCTGCACCGGGAACCTGTGCAGTAAGGAATCGTACGACTATCTCAAAACGCTCGCCAACGATGTGCACATTGTGCGCGGAGACTTTGACGAAAACACCAACTACCCGGAGCAGAAGGTAGTGACGGGCGGACAGTTCCGGATCGGGCTGTCGCACGGCCACCAGGTAGTGCCGTGGGGTGACCCGGAAGCGCTCGCCCTCATCCAGCGGCAGCTCGACGTGGACATACTGATCTCGGGCCACACGCACAAGTTCGAAGCGTACGAGCACGAGAACAAGTTCTACATCAATCCGGGTTCGGCGACCGGTTCCTACAATCCGCTGGACACCGCCGTCATTTCCGTCCTTTGTGCTGATGGACATNCAGAGCACGACGGTCGTGGACGTACGTG ] [+] EMBL BM635362 [ ccgCTTCGTCACCGTGCTGTTATCGTACGCCCTCCCACATATTCCTTCCGGGCGGATCGTATAGTC AAA AGCCACTTGTCCCCACTATTCTCCTTCGTCCGTTTAGTGTTTGTGTGATATAGACGATCGTTCGCAAGCAAATGCAAAGATGCTGGTGCTAGTGCTAGGTGACCTACACATTCCCCACCGGTGCAGCAGTGTTCCGGCCAAGTTTAAGAAGCTGCTCGTACCGGGGCGCATCCATCACATCCTCTGCACCGGGAACCTGTGCAGTAAGGAATCGTACGACTATCTCAAAACGCTCGCCAACGATGTGCACATTGTGCGCGGAGACTTTGACGAAAACACCAACTACCCGGAGCAGAAGGTAGTGACGGTCGGACAGTTCCGGATCGGGCTGTCGCACGGCCACCAGGTAGTGCCGTGGGGTGACCCGGAAGCGCTCGCCCTCATCCAGCGGCAGCTCGACGTGGACATACTGATCTCGGGCCACACGCACAAGTTCGAAGCGTACGAGCACGAGAACAAGTTCTACATCAATCCGGGTTCGGCGACCGGTTCCTACAATCCGCTGGACACCGCCGTCA TTCCGTCCTTTGTGCTGATGGACATCCAGAGCACGACGGTCGT GACGTACGTGTACCAGCTGGTGGGCGACGGACGTTAAGGTG ] [+] EMBL BX626339 [ TTCGTCACCGTGCTGTTATCGTACGCCCTCCCACATATTCCTTCCGGGCGGATCGTATAGTC AAA AGCCACTTGTCCCCACTATTCTCCTTCGTCCGTTTAGTGTTTGTGTGATATAGACGATCGTTCGCAAGCAAATGCAAAGATGCTGGTGCTAGTGCTAGGTGACCTACACATTCCCCACCGGTGCAGCAGTGTTCCGGCCAAGTTTAAGAAGCTGCTCGTACCGGGGCGCATCCATCACATCCTCTGCACCGGGAACCTGTGCAGTAAGGAATCGTACGACTATCTCAAAACGCTCGCCAACGATGTGCACATTGTGCGCGGAGACTTTGACGAAAACACCAACTACCCGGAGCAGAAGGTAGTGACGGTCGGACAGTTCCGGATCGGGCTGTCGCACGGCCACCAGGTAGTGCCGTGGGGTGACCCGGAAGCGCTCGCCCTCATCCAGCGGCAGCTCGACGTGGACATACTGATCTCGGGCCACACGCACAAGTTCGAAGCGTACGAGCACGAGAACAAGTTCTACATCAATCCGGGTTCGGCGACCGGTTCCTACAATCCGCTGGACACCGCCGTCA TTCCGTCCTTTGTGCTGATGGACATCCAGAGCACGACGGTCGT GACGTACGTGTACCAGCTGGTGGGgcg ] [+] EMBL BM636236 [ ccgCGTCACCGTGCTGTTATCGTACGCCCTCCCACATATTCCTTCCGGGCGGATCGTATAGTCTAAAGCTACTTGTCTC C ACTATTCTCCTTCGTCCGTTTGGTGTTTGAGTGATATAGACGATCGTTCGCAGGCAAATGCAAAGATGCTGGTGCTAGTGCTAGGTGACCTACACATTCCCCACCGGTGCAGCGGTGTTCCGGCCAAGTTTAAGAAGCTGCTCGTACCGGGGCGTATCCACCACATCCTCTGCACCGGGAACCTGTGCAGTAAGGAATCGTACGACTATCTCAAAACGCTCGCCAACGATGTGCACATTGTGCGCGGAGACTTTGACGAAAACACCAACTACCCGGAGCAGAAGGTAGTGACGGTCGGACAGTTCCGGATCGGGCTGTCGCACGGCCACCAGGTAGTGCCGTGGGGTGACCCGGAAGCGCTCGCCCTCATCCAGCGGCAGCTCGACGTGGACATACTGATCTCGGGCCACACGCACAAGTTCGAAGCGTACGAGCACGAGAACAAGTTCTACATCAATCCGGGTTCGGCGACCGGTTCCTACAACCCGCTGGACACCGCCGTCA TTCCGTCCTTTGTGCTGATGGACATCCAGAGCACGACGGTCGT GACGTACGTGTACCAGCTGGTGGGCGAC GACGTTAAGGTGGAACGGATCGAGTATAAGAAGAAT ] [+] EMBL BM644949 [ ccgGTGTTTGTGTGATATAGACGATCGTTCGCAAGCAAATGCAAAGATGCTGGTGCTAGTGCTAGGTGACCTACACATTCCCCACCGGTGCAGCAGTGTTCCGGCCAAGTTTAAGAAGCTGCTCGTACCGGGGCGCATCCATCACATCCTCTGCACCGGGAACCTGTGCAGTAAGGAATCGTACGACTATCTCAAAACGCTCGCCAACGATGTGCACATTGT GCGGAGACTTTGACGAAAACACCAACTACCCGCAGCAGAAGGTAGTGACGGTCGGACAGTTCCGGATCGGGCTGTCGCAC ] [+] EMBL BM597865 [ ccgGTTTGAGTGATATAGACGATCGTTCGCAAGCAAATGCAAAGATGCTGGTGCTAGTGCTAGGTGACCTACACATTCCCCACCGGTGCAGCAGTGTTCCGGCCAAGTTTAAGAAGCTGCTCGTACCGGGGCGTATCCACCACATCCTCTGCACCGGGAACCTGTGCAGTAAGGAATCGTACGACTATCTCAAAACGCTCGCCAACGATGTGCACATTGTGCGCGGAGACTTTGACGAAAACACCAACTACCCGGAGCAGAAGGTAGTGACGGTCGGACAGTTCCGGATCGGGCTGTCGCACGGCCACCAGGTAGTGCCGTGGGGTGACCCGGAAGCGCTCGCCCTCATCCAGCGGCAGCTCGACGTGGACATACTGATCTCGGGCCACACGCACAAGTTCGAAGCGTACGAGCACGAGAACAAGTTCTACATCAATCCGGGTTCGGCGACCGGTTCCTACAACCCGCTGGACACCGCCGTCA TTCCGTCCTTTGTGCTGATGGACATCCAGAGCACGACGGTCGT GACGTACGTGTACCAGCTGGTGGGCGAC GACGTTAAGGTGGAACGGATCGAGTATAAGAAGAATTGAGCAAGCAAACAAACCGCCAGCCATTTCGAGCACACGGCCGACCGTTCGGCAGAGTGCGACAAAATAGGACGTTAATCGAATAACAACAGA] consensusID : consensus_7653#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence [CCGGTCTAAAGCTACTTGTCTCCACTATTCTCCTTCGTCCGTTTAGTGTTTGAGTGATATAGACGATCGTTCGCAAGCAAATGCAAAGATGCTGGTGCTAGTGCTAGGTGACCTACACATTCCCCACCGGTGCAGCAGTGTTCCGGCCAAGTTTAAGAAGCTGCTCGTACCGGGGCGTATCCACCACATCCTCTGCACCGGGAACCTGTGCAGTAAGGAATCGTACGACTATCTCAAAACGCTCGCCAACGATGTGCACATTGTGCGCGGAGACTTTGACGAAAACACCAACTACCCGGAGCAGAAGGTAGTGACGGTCGGACAGTTCCGGATCGGGCTGTCGCACGGCCACCAGGTAGTGCCGTGGGGTGACCCGGAAGCGCTCGCCCTCATCCAGCGGCAGCTCGACGTGGACATACTGATCTCGGGCCACACGCACAAGTTCGAAGCGTACGAGCACGAGAACAAGTTCTACATCAATCCGGGTTCGGCGACCGGTTCCTACAACCCGCTGGACACCGCCGTCATTCCGTCCTTTGTGCTGATGGACATCCAGAGCACGACGGTCGTGACGTACGTGTACCAGCTGGTGGGCGACGACGTTAAGGTGGAACGGATCGAGTATAAGAAGAATTGAGCAA] [+] EMBL BM595638 [CCGGTCTAAAGCTACTTGTCTCCACTATTCTCCTTCGTCCGTTTAGTGTTTGAGTGATATAGACGATCGTTCGCAAGCAAATGCAAAGATGCTGGTGCTAGTGCTAGGTGACCTACACATTCCCCACCGGTGCAGCAGTGTTCCGGCCAAGTTTAAGAAGCTGCTCGTACCGGGGCGTATCCACCACATCCTCTGCACCGGGAACCTGTGCAGTAAGGAATCGTACGACTATCTCAAAACGCTCGCCAACGATGTGCACATTGTGCGCGGAGACTTTGACGAAAACACCAACTACCCGGAGCAGAAGGTAGTGACGGTCGGACAGTTCCGGATCGGGCTGTCGCACGGCCACCAGGTAGTGCCGTGGGGTGACCCGGAAGCGCTCGCCCTCATCCAGCGGCAGCTCGACGTGGACATACTGATCTCGGGCCACACGCACAAGTTCGAAGCGTACGAGCACGAGAACAAGTTCTACATCAATCCGGGTTCGGCGACCGGTTCCTACAACCCGCTGGACACCGCCGTCATTCCGTCCTTTGTGCTGATGGACATCCAGAGCACGACGGTCGTGACGTACGTGTACCAGCTGGTGGGCGACGACGTTAAGGTGGAACGGATCGAGTATAAGAAGAATTGAGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7653#0 GAGAAAACAACACACATATTTACATCCACAACTTATCAGCCCAACTTCGTCACCGTGCTG 60 consensus_7653#1 ------------------------------------------------------------ consensus_7653#0 TTATCGTACGCCCTCCCACATATTCCTTCCGGGCGGATCGTATAGTCAAACGCGACTATT 120 consensus_7653#1 ----------------------------CCGGTCTAAAGCTA---CTTGTCTCCACTATT 29 **** * * ** * * ****** consensus_7653#0 CTCCTTCGTCCGTTTAGTGTTTGTGTGATATAGACGATCGTTCGCAAGCAAATGCAAAGA 180 consensus_7653#1 CTCCTTCGTCCGTTTAGTGTTTGAGTGATATAGACGATCGTTCGCAAGCAAATGCAAAGA 89 *********************** ************************************ consensus_7653#0 TGCTGGTGCTAGTGCTAGGTGACCTACACATTCCCCACCGGTGCAGCAGTGTTCCGGCCA 240 consensus_7653#1 TGCTGGTGCTAGTGCTAGGTGACCTACACATTCCCCACCGGTGCAGCAGTGTTCCGGCCA 149 ************************************************************ consensus_7653#0 AGTTTAAGAAGCTGCTCGTACCGGGGCGCATCCATCACATCCTCTGCACCGGGAACCTGT 300 consensus_7653#1 AGTTTAAGAAGCTGCTCGTACCGGGGCGTATCCACCACATCCTCTGCACCGGGAACCTGT 209 **************************** ***** ************************* consensus_7653#0 GCAGTAAGGAATCGTACGACTATCTCAAAACGCTCGCCAACGATGTGCACATTGTGCGCG 360 consensus_7653#1 GCAGTAAGGAATCGTACGACTATCTCAAAACGCTCGCCAACGATGTGCACATTGTGCGCG 269 ************************************************************ consensus_7653#0 GAGACTTTGACGAAAACACCAACTACCCGGAGCAGAAGGTAGTGACGGTCGGACAGTTCC 420 consensus_7653#1 GAGACTTTGACGAAAACACCAACTACCCGGAGCAGAAGGTAGTGACGGTCGGACAGTTCC 329 ************************************************************ consensus_7653#0 GGATCGGGCTGTCGCACGGCCACCAGGTAGTGCCGTGGGGTGACCCGGAAGCGCTCGCCC 480 consensus_7653#1 GGATCGGGCTGTCGCACGGCCACCAGGTAGTGCCGTGGGGTGACCCGGAAGCGCTCGCCC 389 ************************************************************ consensus_7653#0 TCATCCAGCGGCAGCTCGACGTGGACATACTGATCTCGGGCCACACGCACAAGTTCGAAG 540 consensus_7653#1 TCATCCAGCGGCAGCTCGACGTGGACATACTGATCTCGGGCCACACGCACAAGTTCGAAG 449 ************************************************************ consensus_7653#0 CGTACGAGCACGAGAACAAGTTCTACATCAATCCGGGTTCGGCGACCGGTTCCTACAATC 600 consensus_7653#1 CGTACGAGCACGAGAACAAGTTCTACATCAATCCGGGTTCGGCGACCGGTTCCTACAACC 509 ********************************************************** * consensus_7653#0 CGCTGGACACCGCCGTCATTCCGTCCTTTGTGCTGATGGACATCCAGAGCACGACGGTCG 660 consensus_7653#1 CGCTGGACACCGCCGTCATTCCGTCCTTTGTGCTGATGGACATCCAGAGCACGACGGTCG 569 ************************************************************ consensus_7653#0 TGACGTACGTGTACCAGCTGGTGGGCGACGACGTTAAGGTGGAACGGATCGAGTATAAGA 720 consensus_7653#1 TGACGTACGTGTACCAGCTGGTGGGCGACGACGTTAAGGTGGAACGGATCGAGTATAAGA 629 ************************************************************ consensus_7653#0 AGAATTGAAGAGGCAAACAAACCGCCAGCCATTTCGAGCACACGGCCGACCGTTCGGCAG 780 consensus_7653#1 AGAATTGAGCAA------------------------------------------------ 641 ******** * consensus_7653#0 AGTGCGACAAAATAGGACGTTAATCGAATAACAACAGA 818 consensus_7653#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||