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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7660#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1832 fasta sequence
[ACGCGTCCGGAACAATTGCCGCGATGCTTTAACACAACTCTTTTCGGGCGCTCATTGCAGTAGAATGAGGGTTGTTTTGATTGATAGAGTAACTAGCAAATAGCTTTCTTGTTTGTTTTTTTTTTTTTTTGTTTTGTTGCTTTTAGAAAAGCATTTAGAAAAGGCAAAACCACACAAACTCTGTGCAGTATCCATGAATGGCATAAAAGCGTATGTAGAGGTTATTGAAAACGATCAACAAAGGTTGACTCGAATCGAGTGAATTGCAAACAAC-----AAGAGCATAATTTGCATCTGTTTGTTTGACAGAAATGCAAGAAACATGTGAAAACGGT-AAAAAAACAGGGGAAGGAAAAATAACCGATAGTAAAAATGTATACGATGATGATTACTTTGGAACGTAAAAATCTCCTAATACGTGAAAAAACACTCACACAGTTGTATCGCGCATATATAAAAAGGGATGAAAAAGAACATCAAAATATAAAACCCTTACAAAAGGAAGCAAACGTGGACACTGCAAGATGAAGATTAAAACCCATATCGTGTTAAGAAATTTAGCAAAACAACAACAAAAACATATCGTGTGCAATTTTCATGCTGAGAGCAACCTGTTGAGGGAAAATTACAAACCTGTTTCGTTTATCTTCCCCATACTTCTTTCGGAACAAACGGACATCGGCATCATAAACAACCACACACACACACACACATACACGGAAGCTCCATATCGAATACATATTAGAAATGATTGGAAATATGTGTAGCAAGGAAACTCGTTTTTGA----GACTGGAATATGACGCAAAAATGTGTTTTCTTATACAAAGCACGACAAACAAAAAGCTAGTACAACTAAGTAACTTAGTTTTTAAAACAATTTTTGAATTAGGATACGGTTTGGTTTTAGTTCTCGGTTTGCTTTGGTGATTTTTATTTGTTATATTTTATGTACTACGAGGTAGAAGAAACTAAAAAAACAAGCAAACTCTTAGCGTTAAACGTGTAAGACAAAAA-GACATTTGTAATGTTCAAAGATTGTTAAAGTTTTATCGGTAATGATGTTGCGCGACGCATTGGGCACTGGGAGTTAAAGGTGCGGAGTGTGTTGCGTAATGCTAAATTAATACTTCAG--------AGCCATTACAAACAAACACATTATTGTACTGAAATAAGCTCGGCGCTATTTCACCTTACTTTCATACCAAAATGCTCTCTTACGTTGGTTGAACTGCGCTCTGGAAGATTTGAGTTGCGAGCGCGTTTCAAGTAAATGGGGACCCAGGGTGAATGTTTCCAACTTAACTTTGTTCACATTTTGTCTGACTATTCTTAATTCGGGTTACTGCAAACCTGGGTACATATTGCAAACGAGTACAGTGTGCAGTACGCGATGTTGGTGGTGGCTGAATCTTTCTAAATGGCTGGGGTCGACACTACACTGAAGCAAAGTATTTTGGATGTTATAATGGGGCTTTACGCTGAAAATTTAAAATACTTAAGTGAAACGTAAGTGCCAAAAATAAGTAAAAATAAATAGGAAATAGCCAGAGATAGAAAAACAAATGTGAGATAATAGCAGGGTGTATGACGAATAAGGAAGGAATAATGGATTACAGCGTTTGACTGAAACTCCTTCGGCTCCGGGATGATCTATTCTTGCCCTTGATATGCCCCACCCAGTTAATTCCTTAGCAAAAATCCAACTGAAAGCGCGTGCGTGTAAACAAAGCCTGCAGATGGTTGACGTATTTTCCAAAACAAATTCAGTAGTATATCGGCAGAAATGTTAGGCTCAATGTGGAATGACATGTTATTGGTTGAACAATTAGTGTAGTCATA]
[+] EMBL BM628730 [ACGCGTCCGGAACAATTGCCGCGATGCTTTAACACAACTCTTTTCGGGCGCTCATTGCAGTAGAATGAGGGTTGTTTTGATTGATAGAGTAACTAGCAAATAGCTTTCTTGTTTGTTTTTTTTTTTTTTTGTTTTGTTGCTTTTAGAAAAGCATTTAGAAAAGGCAAAACCACACAAACTCTGTGCAGTATCCATGAATGGCATAAAAGCGTATGTAGAGGTTATTGAAAACGATCAACAAAGGTTGACTCGAATCGAGTGAATTGCAAACAACTTAAAAAGAGCATAATTTGCATCTGTTTGTTTGACAGAAATGCAAGAAACATGTGAAAACGGTAAAAAAAACAGGGGAAGGAAAAATAACCGATAGTAAAAATGTATACGATGATGATTACTTTGGAACGTAAAAATCTCCTAATACGTGAAAAAACACTCACACAGTTGTATCGCGCATATATAAAAAGGGATGAAAAAGAACATCAAAATATAAAACCCTTACA ]
[+] EMBL AGA281085 [ GTTTTGTTGCTTTTAGAAAAGCATTTAGAAAAGGCAAAACCACACAAACTCTGTGCAGTATCCATGAATGGCATAAAAGCGTATGTAGAGGTTATTGGAAACGATCAACAAAGGTTGACTCGAATCGAGTGAATTGCAAACAAC ATGAGCATAATTTGCATCTGTTTGTTTGACAGAAATGCAAGAAACATGTGAAAACGGT AAAAAAACAGGGGAAGGAAAAATAACCGATAGTAAAAATGTATACGATGATGATTACTTTGGAACGTAAAAATCTCCTAATACGTGAAAAAACACTCACACAGTTGTATCGCGCATATATAAAAAGGGATGAAAAAGAACATCAAAAT ]
[+] EMBL BM627087 [ ccgGAAAAAACACTCACACAGTTGTATCGCGCATATATAAAAAGGGATGAAAAAGAACATCAAAATATAAAACCCTCACAAAAGGAAGCAAACGTGGACACTGCAAGATGAAGATTAAAACCCATATCGTGTTAAGAAATTTAGCAAAACAACAACAAAAACATATCGTGTGCAATTTTCATGCTGAGAGCAACCTGTTGAGGGAAAATTACAAACCTGTTTCGTTTATCTTCCCCATACTTCTTTCGGAACAAACGGACATCGGCATCATAAACAACCACACACACACACACACATACACGGAAGCTCCATATCGAATACATATTAGAAATGATTGGAAATATGTGTAGCAAGGAAACTCGTTTTTGA GACTGGAATATGACGCAAAAATGTGTTTTCTTATACAAAGCACGACAAACAAAAAGCTAGTACAACTAAGTAACTTAGTTTTTAAAACAATTTTTGAATTAGGATACGGTTTGGTTTTAGTTCTCGGTTTGCTTTGGTGATTTTTATTTGTTATATTTTATGTACTACGAGGTAGAAGAAACTAAAAAAACAAGCAAACTCTTAGCGTTAAACGTGTAAGACAAAAA GACATTTGTAATGTTCAAAGATTGTTAAAGTTTTATCGGTAATGATGTTGCGCGACGCATTGGGCACTGGGAGTTAAAGGTGCGGAG ]
[+] EMBL BM602205 [ ccgCGGAAGCTCCATATCGAATACATATTAGAAATGATTGGAAATATGTGTAGCAAGGAAACTCGTTTTTGAATATGACTGGAATATGACGCAAAAATGTGTTTTCTTATACAAAGCACGACAAACAAAAAGCTAGTACAACTAAGTAACTTAGTTTTTAAAACAATTTTTGAATTAGGATACGGTTTGGTTTTAGTTTTCGGTTTGCTTTGGTGATTTTTATTTGTTATATTTTATGTACTACGAGGTAGAAGAAACTAAAAAATCAAGCAAACTCTTAGCGTTAAACGTGTAAGACAAAAAGGACATTTGTAATGTTCAAAGATTGTTAAAGTTTTATCGGTAATGATGTTGCGCGACGCATTGGGCACTGGGAGTTAAAGGTGCGGAGTGTGTTGCGTAATGCTAAATTAATACTTCAG AGCCATTACAAACAAACACATTATTGTACTGAAATAAGCTCGGCGCTATTTCACCTTACTTTCATACCAAAATGCTCTCTTACGTTGGTTGAACTGCGCTCTGGAAGATTTGAGTTGCGAGCGCGTTTCAAGTAAATGGGGACCCAGGGTGAATGTTTCCAACTTAACTTTGTTCACATTTTGTCTGACTATTCTTAATTCGGGTTACTGCAAACCTGGGTACATATTGCAAACGAGTACAG ]
[+] EMBL BX620867 [ GTTAAAGTTTTATCGGTAATGATGTTGCGCGACGCATTGGGCACTGGGAGTTAAAGGTGCGGAGTGTGTTGCGTAATGCTAAATTAATACTTCAG AGCCATTACAAACAAACACATTATTGTACTGAAATAAGCTCGGCGCTATTTCACNTTACTTTCATACCAAAATGCTCTCTTACGTTGGTAGAACTGCGCTCTGGAAG ]
[+] EMBL BX616354 [ TGGGAGTTAAAGGTGCGGAGTGTGTCGCGTAATGCTAAATTAATACTTCAGACAATTACAACCATTACAAACAAACACATTATTGTACTGAAATAAGCTCGGCGCTATTTCACCTTACTTTCATACCAAAATGCTCTCTTACGTTGGTTGAACTGCGCTCTGGAAGATTTGAGTTGCGAGCGCGTTTCAAGTAAATGGGGACCCAGGGTGAATGTTTCCAACTTAACTTTGTTCACATTTTGTCTGACTATTCTTAATTCGGTTTGCTGCAAACCTGGGTACATATTGCAAACGAGTACAGTGTGCAGTACGCGATGTTGGTGGTGGCTGAATCTTTCTAAATGGCTGGGGTCGACACTACACTGAAGCAAAGTATTTTGGATGTTATAATGGGGCTTTACGCTGAAAATTTAAAATACTTAAGTGAAACGTAAGTGCCAAAAATAAGTAAAAATAAATAGGAAATAGCCAGAGATAGAAAAACAAATGTGAGATAATAGCAGGGTGTATGACGAATAAGGAAGGAATAATGGATTACAGCGTTTGACTGAAACTCCTTCGGCTCCGGGATGATCTATTCTTGCCCTTGATATGCCCCACCCAGTTAATTCCTTAGCAAAAATCCAACTGAAAGCGCGTGCGTGTAAACAAAGCCTGCAGATGGTTGACGTATTTTCCAAAACAAATTCAGTAGTATATCGGCAGAAATGTTAGGCTCAATGTGGAATGACATGTTATTGGTTGAACAATTAGTGTAGTCATA]
[-] EMBL AGA282713 [ CCCACCCAGTTAATTCCTTAGCAAAAATCCAACTGAAAGCGCGTGCGTGTAAACAAAGCCTGCAGATGGTTGACGTATTTTCCAAAACAAATTCAGTAGTATATCGGCAGAAATGTTAGGCTCAATGTGGAATGACATGTTATTGGTTGAACAAT ]
consensusID : consensus_7660#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence
[CCGCGGACGCGTGGGCACACATACACACATACACGGAAGCTCCATATCGAATACATATTAGAAATGATTGGAAATATGTGTAGCAAGGAAACTCGTTTTTGAATATGACTGGAATATGACGCAAAAATGTGTTTTCTTATACAAAGCACGACAAACAAAAAGCTAGTACAACTAAGTAACTTAGTTTTTAAAACAATTTTTGAATTAGGATACGGTTTGGTTTTAGTTTTCGGTTTGCTTTGGTGATTTTTATTTGTTATATTTTATGTACTACGAGGTAGAAGAAACTAAAAAATCAAGCAAACTCTTAGCGTTAAACGTGTAAGACAAAAAGACATTTGTAATGTTCAAAGATTGTTAAAGTTTTATCGGTAATGATGTTGCGCGACGCATTGGGCACTGGGAGTTAAAGGTGCGGAGTGTGTTGCGTAATGCTAAATTAATACTTCAGAGCCATTACAAACAAACACATTATTGTACTGAAATAAGCTCGGCGCTATTTCACCTTACTTTCATACCAAAATGCTCTCCTTACGTTGGTTGAACTGCGCTCT]
[+] EMBL BM604623 [CCGCGGACGCGTGGGCACACATACACACATACACGGAAGCTCCATATCGAATACATATTAGAAATGATTGGAAATATGTGTAGCAAGGAAACTCGTTTTTGAATATGACTGGAATATGACGCAAAAATGTGTTTTCTTATACAAAGCACGACAAACAAAAAGCTAGTACAACTAAGTAACTTAGTTTTTAAAACAATTTTTGAATTAGGATACGGTTTGGTTTTAGTTTTCGGTTTGCTTTGGTGATTTTTATTTGTTATATTTTATGTACTACGAGGTAGAAGAAACTAAAAAATCAAGCAAACTCTTAGCGTTAAACGTGTAAGACAAAAAGACATTTGTAATGTTCAAAGATTGTTAAAGTTTTATCGGTAATGATGTTGCGCGACGCATTGGGCACTGGGAGTTAAAGGTGCGGAGTGTGTTGCGTAATGCTAAATTAATACTTCAGAGCCATTACAAACAAACACATTATTGTACTGAAATAAGCTCGGCGCTATTTCACCTTACTTTCATACCAAAATGCTCTCCTTACGTTGGTTGAACTGCGCTCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7660#0 ACGCGTCCGGAACAATTGCCGCGATGCTTTAACACAACTCTTTTCGGGCGCTCATTGCAG 60
consensus_7660#1 ------------------------------------------------------------
consensus_7660#0 TAGAATGAGGGTTGTTTTGATTGATAGAGTAACTAGCAAATAGCTTTCTTGTTTGTTTTT 120
consensus_7660#1 ------------------------------------------------------------
consensus_7660#0 TTTTTTTTTTGTTTTGTTGCTTTTAGAAAAGCATTTAGAAAAGGCAAAACCACACAAACT 180
consensus_7660#1 ------------------------------------------------------------
consensus_7660#0 CTGTGCAGTATCCATGAATGGCATAAAAGCGTATGTAGAGGTTATTGAAAACGATCAACA 240
consensus_7660#1 ------------------------------------------------------------
consensus_7660#0 AAGGTTGACTCGAATCGAGTGAATTGCAAACAACAAGAGCATAATTTGCATCTGTTTGTT 300
consensus_7660#1 ------------------------------------------------------------
consensus_7660#0 TGACAGAAATGCAAGAAACATGTGAAAACGGTAAAAAAACAGGGGAAGGAAAAATAACCG 360
consensus_7660#1 ------------------------------------------------------------
consensus_7660#0 ATAGTAAAAATGTATACGATGATGATTACTTTGGAACGTAAAAATCTCCTAATACGTGAA 420
consensus_7660#1 ------------------------------------------------------------
consensus_7660#0 AAAACACTCACACAGTTGTATCGCGCATATATAAAAAGGGATGAAAAAGAACATCAAAAT 480
consensus_7660#1 ------------------------------------------------------------
consensus_7660#0 ATAAAACCCTTACAAAAGGAAGCAAACGTGGACACTGCAAGATGAAGATTAAAACCCATA 540
consensus_7660#1 ------------------------------------------------------------
consensus_7660#0 TCGTGTTAAGAAATTTAGCAAAACAACAACAAAAACATATCGTGTGCAATTTTCATGCTG 600
consensus_7660#1 ------------------------------------------------------------
consensus_7660#0 AGAGCAACCTGTTGAGGGAAAATTACAAACCTGTTTCGTTTATCTTCCCCATACTTCTTT 660
consensus_7660#1 ------------------------------------------------------------
consensus_7660#0 CGGAACAAACGGACATCGGCATCATAAACAACCACACACACACACACACATACACGGAAG 720
consensus_7660#1 ---------------------CCGCGGACGCGTGGGCACACATACACACATACACGGAAG 39
* ** ****** *****************
consensus_7660#0 CTCCATATCGAATACATATTAGAAATGATTGGAAATATGTGTAGCAAGGAAACTCGTTTT 780
consensus_7660#1 CTCCATATCGAATACATATTAGAAATGATTGGAAATATGTGTAGCAAGGAAACTCGTTTT 99
************************************************************
consensus_7660#0 TGA----GACTGGAATATGACGCAAAAATGTGTTTTCTTATACAAAGCACGACAAACAAA 836
consensus_7660#1 TGAATATGACTGGAATATGACGCAAAAATGTGTTTTCTTATACAAAGCACGACAAACAAA 159
*** *****************************************************
consensus_7660#0 AAGCTAGTACAACTAAGTAACTTAGTTTTTAAAACAATTTTTGAATTAGGATACGGTTTG 896
consensus_7660#1 AAGCTAGTACAACTAAGTAACTTAGTTTTTAAAACAATTTTTGAATTAGGATACGGTTTG 219
************************************************************
consensus_7660#0 GTTTTAGTTCTCGGTTTGCTTTGGTGATTTTTATTTGTTATATTTTATGTACTACGAGGT 956
consensus_7660#1 GTTTTAGTTTTCGGTTTGCTTTGGTGATTTTTATTTGTTATATTTTATGTACTACGAGGT 279
********* **************************************************
consensus_7660#0 AGAAGAAACTAAAAAAACAAGCAAACTCTTAGCGTTAAACGTGTAAGACAAAAAGACATT 1016
consensus_7660#1 AGAAGAAACTAAAAAATCAAGCAAACTCTTAGCGTTAAACGTGTAAGACAAAAAGACATT 339
**************** *******************************************
consensus_7660#0 TGTAATGTTCAAAGATTGTTAAAGTTTTATCGGTAATGATGTTGCGCGACGCATTGGGCA 1076
consensus_7660#1 TGTAATGTTCAAAGATTGTTAAAGTTTTATCGGTAATGATGTTGCGCGACGCATTGGGCA 399
************************************************************
consensus_7660#0 CTGGGAGTTAAAGGTGCGGAGTGTGTTGCGTAATGCTAAATTAATACTTCAGAGCCATTA 1136
consensus_7660#1 CTGGGAGTTAAAGGTGCGGAGTGTGTTGCGTAATGCTAAATTAATACTTCAGAGCCATTA 459
************************************************************
consensus_7660#0 CAAACAAACACATTATTGTACTGAAATAAGCTCGGCGCTATTTCACCTTACTTTCATACC 1196
consensus_7660#1 CAAACAAACACATTATTGTACTGAAATAAGCTCGGCGCTATTTCACCTTACTTTCATACC 519
************************************************************
consensus_7660#0 AAAATGCTCTC-TTACGTTGGTTGAACTGCGCTCTGGAAGATTTGAGTTGCGAGCGCGTT 1255
consensus_7660#1 AAAATGCTCTCCTTACGTTGGTTGAACTGCGCTCT------------------------- 554
*********** ***********************
consensus_7660#0 TCAAGTAAATGGGGACCCAGGGTGAATGTTTCCAACTTAACTTTGTTCACATTTTGTCTG 1315
consensus_7660#1 ------------------------------------------------------------
consensus_7660#0 ACTATTCTTAATTCGGGTTACTGCAAACCTGGGTACATATTGCAAACGAGTACAGTGTGC 1375
consensus_7660#1 ------------------------------------------------------------
consensus_7660#0 AGTACGCGATGTTGGTGGTGGCTGAATCTTTCTAAATGGCTGGGGTCGACACTACACTGA 1435
consensus_7660#1 ------------------------------------------------------------
consensus_7660#0 AGCAAAGTATTTTGGATGTTATAATGGGGCTTTACGCTGAAAATTTAAAATACTTAAGTG 1495
consensus_7660#1 ------------------------------------------------------------
consensus_7660#0 AAACGTAAGTGCCAAAAATAAGTAAAAATAAATAGGAAATAGCCAGAGATAGAAAAACAA 1555
consensus_7660#1 ------------------------------------------------------------
consensus_7660#0 ATGTGAGATAATAGCAGGGTGTATGACGAATAAGGAAGGAATAATGGATTACAGCGTTTG 1615
consensus_7660#1 ------------------------------------------------------------
consensus_7660#0 ACTGAAACTCCTTCGGCTCCGGGATGATCTATTCTTGCCCTTGATATGCCCCACCCAGTT 1675
consensus_7660#1 ------------------------------------------------------------
consensus_7660#0 AATTCCTTAGCAAAAATCCAACTGAAAGCGCGTGCGTGTAAACAAAGCCTGCAGATGGTT 1735
consensus_7660#1 ------------------------------------------------------------
consensus_7660#0 GACGTATTTTCCAAAACAAATTCAGTAGTATATCGGCAGAAATGTTAGGCTCAATGTGGA 1795
consensus_7660#1 ------------------------------------------------------------
consensus_7660#0 ATGACATGTTATTGGTTGAACAATTAGTGTAGTCATA 1832
consensus_7660#1 -------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||