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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7677#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1627 fasta sequence
[CCGGTGAGCTGCAAGCCTGGAACAATCCGCCGGAGAAGGGCGACGGTAACGTTGAAACGGAGGAAGGCGTGCCGCTGCGCAATCAGGCCGCCGCGGTCAAGTAAACAGCGACACGGCACACAACCGTGGCCGCCGTGTGTTTGTGTGTGTGTGTGTGGGTGTGTCCGTTTTCTCTTACATACGTCAGCAGCAAACGGTGGGGATGGTGGCGGCGGTGCTGGTGCTATATTTGGCCGATTAGAGAGAGGTCAAACGAAGCGGCAGCAAAAGCAGTAAGATTCTCTATTTTAAAAGAGGCCAAACAGTTAGCCGCTGCTCTTAACTCCCCTCAGCAAAAACGGCAGAGGATTTTTTTGTGAAAAAACCCCGAATGTCGTACATTTATGCGTGTGCGTGCGCGTGTTTCGTAGTAAAAGAAGACACATTAAAGGAGGAAGAGCGATAGAGGGATACAGAGAGGAGATTTGTCGTAGCATTTAATAACTTATTGTTTT--AAAAGCAACCA----CCCC----CCCCCCCCGCATCTATCGAATCACCCGGAAATGCTGTGCCTCGCGTGCCGAGAGTGTGCAAATGCTGTTTTTTTAGTATTTTGTAGCCAATTACAGCGTTAATAGGTGTGTAGAGCAATGAGTAGGAAATAGATCAGCGGAGATAGTGGTTTTTAATCCAGC-TTTTTTCTGTTTTTGGTAGTAGAAGCAAATTGGGGGGAAAACATCATCAGGTACGACACACACTCAGAAGAAAAAAAACCACGACCACACAGGAAAAGAAGGTGTAGGACCTCTTTTAGAGGGTACAAGACAGAGGAACGGAAGCGAAGTATCTGATTGATTCAGGGGGTTTGACTTAATTTTTAAAATGTACAAAAAGCGTAAT--TGTGTGTGTGTGTGCTTATGTGAAGAAGGGCGTGGTGCAGTGTGGCGTGCGTGCGTCACTAACGGTCGTCATGAGAGGAGTGAACGATTTTCATGTTTTAATGAAAATGGTGCAATCGTAACGAATGCGAGTATATGAACATGACCGGAAAGAGCTGCTTGCTGTGTTGGGCCTGTGGAAGCGGAACCGATCCAGCGGGGGCCTCTCCTCAAGACTTCTTTCCATCTCAGTACGAACG-GGGGG-GGC-GTCCACCGAATGTCACACTGTGAGTAGCTTCAC--ACACAAAAACCAATCCATCACACATGTGCTTTCCCAACGAATGGTGGGGCAACTGTTAACAGGAATAGATTTCTATAAATGTGCCTTTTTTTACTAAGAACTCTTTGATATCGCGTGTGGGGAGCGAAGGAATCTTGTTAAAGCTACTTAGCGTACAGGTTTAGATGCGTGCGTGTGTATATGTACGTAAAC--A--TGTGTGTATGTTTAGGTCGAATCATGATGCTAATCAATCTACTTAAACTTTACAGAGACACGACGGTACTTGATATTTTATTTACAATGTGTTTTTCCCCATTTTTTCTCTCTCTTTCCTTTCTCGTGTACCAATAATATACATACCCCCTAAGCGCGTGTACTGAACTCATTTTAAACAGATAGAAAAACTGAACAATAAAGTAACTGTGAACGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCGCCGCTCGCATCTAGAACAGCGG]
[+] EMBL BM587409 [CCGGTGAGCTGCAAGCCTGGAACAATCCGCCGGAGAAGGGCGACGGTAACGTTGAAACGGAGGAAGGCGTGCCGCTGCGCAATCAGGCCGCCGCGGTCAAGTAAACAGCGACACGGCACACAACCGTGGCCGCCGTGTGTTTGTGTGTGTGTGTGTGGGTGTGTCCGTTTTCTCTTACATACGTCAGCAGCAAACGGTGGGGATGGTGGCGGCGGTGCTGGTGCTATATTTGGCCGATTAGAGAGAGGTCAAACGAAGCGGCAGCAAAAGCAGTAAGATTCTCTATTTTAAAAGAGGCCAAACAGTTAGCCGCTGCTCTTAACTCCCCTCAGCAAAAACGGCAGAGGATTTTTTTGTGAAAAAACCCCGAATGTCGTACATTTATGCGTGTGCGTGCGCGTGTTTCGTAGTAAAAGAAGACACATTAAAGGAGGAAGAGCGATAGAGGGATACAGAGAGGAGATTTGTCGTAGCATTTAATAACTTATTGTTTTAAAAAAGCAACCA CCCCCCCACCCCCCCCGCATCTATCGAATCACCCGGAAATGCTGTGCCTCGCGTGCCGAGAGCGT ]
[+] EMBL BX616151 [ CGTAGTAAAAGAAGACACATTAAAGGAGGAAGAGCGATAGAGGGATACAGAGAGGAGATTTGTCGTAGCATTTAATAACTTATTGTTTT AAAAGCAACCACCCCCCCC CCCCCCCCGCATCTATCGAATCACCCGGAAATGCTGTGCCTCGCGTGCCGAGAGTGTGCAAATGCTGTTTTTTTAGTATTTTGTAGCCAATTACAGCGTTAATAGGTGTGTAGAGCAATGAGTAGGAAATAGATCAGCGGAGATAGTGGTTTTTAATCCAGC TTTTTTCTGTTTTTGGTAGTAGAAGCAAATTGGGGGGAAAACATCATCAGGTACGACACACACTCAGAAGAAAAAAAACCACGACCACACAGGAAAAGAAGGTGTAGGACCTCTTTTAGAGGGTACAAGACAGAGGAACGGAAGCGAAGTATCTGATTGATTCAGGGGGTTTGACATAATTTTTAAAATGTACAAAAAGCGTAAT TGTGTGTGTGTGTGCTTATGTGAAGAAGGGCGTGGTGCAATGTGGCGTGCGTGCGTC ]
[+] EMBL BM607827 [ ccgGCATTTAATAACTTATTGTTTT AAAAGCAACCA CCCC CCCCCCCCGCATCTATCGAATCACCCGGAAATGCTGTGCCTCGCGTGCCGAGAGTGTGCAAATGCTGTTTTTTTAGTATTTTGTAGCCAATTACAGCGTTAATAGGTGTGTAGAGCAATGAGTAGGAAATAGATCAGCGGAGATAGTGGTTTTTAATCCAGCTTTTTTTCTGTTTTTGGTAGTAGAAGCAAATTGGGGGGAAAACATCATCAGGTACGACACACACTCAGAAGAAAAAAAACCACGACCACACAGGAAAAGAAGGTGTAGGACCTCTTTTAGAGGGTACAAGACAGAGGAACGGAAGCGAAGTATCTGATTGATTCAGGGGGTTTGACTTAATTTTTAAAATGTACAAAAAGCGTAATTGTGTGTGTGTGTGTGCTTATGTGAAGAAGGGCGTGGTGCAGTGTGGCGTGCGTGCGTCACTAACGGTCGTCATGAGAGGAGTGAACGATTTTCATGTTTTAATGAAAATGGTGCAATCGTAACGAATGCGAGTATATGAACATGACCGGAAAGAGCTGCTTGCTGTGTTGGGCCTGTGGAAGCGGAACCGAT ]
[+] EMBL BX609581 [ GGTACAAGACAGAGGAACGGAAGCGAAGTATCTGATTGATTCAGGGGGTTTGACATAATTTTTAAAATGTACAAAAAGCGTAAT TGTGTGTGTGTGTGCTTATGTGAAGAAGGGCGTGGTGCAGTGTGGCGTGCGTGCGTCACTAACGGTCGTCAAGAGAGGAGAGAACGATTTTCATGTTTTAATGAAAATGGTGCAATCGTAACGAATGCGAGTACATGAACATGACCGGAAAGAGCTGCTTGCTGTGTTGGGCCTGTGGAAGCGGAACCGATCCAGCGGGGGCCTCTCCTCAAGACTTCTTTCCATCTCAGTACGAACGCGGGGGCGGCTGTCCACCGAATGTCACACTGCGAGTAGCTTCGC ACACAAAAACCAATCCATCACACATGTGCTTTCCCAACGAATGGTGGGGCAACTGTTAACAGGAATAGATTTCTATAAATGTGCCTTTTTTTACTAAGAACTCTTTGATATCGCGTGTGGGGAGCGAAGGAATCTTGTTAAAGCTACTTAGCGTACAGGTTTAGATGCGTGCGTGTGTATATGTACGTAAAC A TGTGTGTATGTTTAGGTCGAATCATGAAGCTAATCAATCTACTTAAACTTTACAGAGACACGACGGTACTTGATATTTTAT ]
[+] EMBL BM637252 [ ccgACGGAAGCGAAGTATCTGATTGATTCAGGGGGTTTGACTTAATTTTTAAAATGTACAAAAAGCGTAAT TGTGTGTGTGTGTGCTTATGTGAAGAAGGGCGTGGTTCAGTGTGGCGTGTGTGCGTCACTAACGGTCGTCATGAGAGGAGTGAACGATTTTCATGTTTTAATGAAAATGGTGCAATCGTAACGAATGCGAGTATATGAACATGACCGGAAAGAGCTGCTTGCTGTGTTGGGCCTGTGGAAGCGGAACCGATCCAGCGGGGGCCTCTCCTCAAGACTTCTTTCCATCTCAGTACGAACG GGGGG GAC GTCCACCGAATGTCACACTGTGAGTAGCTTCACATACACAAAAACCAATCCATCACACATGTGCTTTCCCAACGAACGGTGGGGCAACTGTTAACAGGAATAGATTTCTATAAATGTGCCTTTTTTTACTAAGAACTCTTTGATATCGCGTGTGGGGAGCGAAGGAATCTTGTTAAAGCTACTTAGCGTACAGGTTTAGATGCGTGCGTGTGTATGTGTGCGTAAAC A TGTGTGTATGTTTAGGTCGAATCATGATGCTAATCAATCTACTTAAACTTTACAGAGACACGACGGTACTTGATATTTTATTTACAATGTGTTTTTCCCCATTTTTTCTCTCTCTTTCCTTTCTCGT ]
[+] EMBL BM630436 [ ccGATTGATTCAGGGGGTTTGACTTAATTTTTAAAATGTACAAAAAGCGTAATTGTGTGTGTGTGTGTGCTTATGTGAAGAAGGGCGTGGTGCAGTGTGGCGTGCGTGCGTCTCTAACGGTCGTCATGAGAGGAGTGAACGATTTTCATGTTTTAATGAAAATGGTGCAATCGTAACGAATGCGAGTATATGAACATGACCGGAAAGAGCTGCTTGCTGTGTTGGGCCTGTGGAAGCGGAACCGATCCAGCGGGGGCCTCTCCTCAAGACTTCTTTCCATCTCAGTACGAAC CGGGG GGC GGCCACCGAATGTCACACTGTGAGTAGCTTCAC ACACAAAAACCAATCCATCACACATGTGCTTTCCCAACGAATGGTGGGGCAACTGTTAACAGGAATAGATTTCTATAAATGTGCCTTTTTTTACTAAGAACTCTTTGATATCGCGTGTGGGGAGCGAAGGAATCTTGTTAAAGCTACTTAGTGTACAGGTTCAGATGCGTGCGTGTGTATATGTACGTAAAC ATGTGTGTGTATGTTTAGGACAAATCATGATGCTAATCAATCTACTTAAACTTTACAGAGACACGACGGTACTTGATATTTTATTTACAATGT ]
[-] EMBL BM611979 [ AACGAACGGTGAGGCAACTGTTAACAGGAATAGATTTTTATAAATGTGCCTTTTTTTACTAAGAACTCTTTGATATCGCGTGTGGGGAGCGAAGGAATTTTGTTAAAGCTACTTAGCGTACAGGTTTAGATGCGTGCGTGTGTATATGTACGTAAACGTG TGTGTGTATGTTTAGGTCGAATCATGATGCTAATCAATTTACTTAAACTTTACAGAGACCCGACGGTACTTGATATTTTATTTACAATGTGTTTTCCCCCATTTTTTCTCTCTCTTT CTTTCTCGGGTACCAATAATATACATACCCCCTAAGCGCGTGTACTGAACTCATTTTAAACAGATAGAAAAACTGAACAATAAAGTAACTGTGAACGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCGCCGCTCGCATCTAGAACAGCGG]
consensusID : consensus_7677#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 412 fasta sequence
[ATCGCCGAGTTTGTGTGTGTGCTTATGTGAAGAAGGGCGTGGTTCAGTGTGGCGTGTGTGCGTCACTAACGGTCGTCATGAGAGGAGTGAACGATTTTCATGTTTTAATGAAAATGGTGCAATCGTAACGAATGCGAGTATATGAACATGACCGGAAAGAGCTGCTTGCTGTGTTGGGCCTGTGGAAGCGGAACCGATCCAGCGGGGGCCTCTCCTCAAGACTTCTTTCCATCTCAAGCGTACCGAATACCAGCTTCTTAATATCGACGATGGTTTCCTGAACCTGATGAATGAAAACGGCGACAGCAAGGACGACGTCAAGCTCCCCGACGGCGAGCTCGGTGACAGGATCCAGACCATGTTTGACGATGTGCAAGGACTGCAACGTTATCATCCTCGCTGTCATGGGTGA]
[+] EMBL AL930795 [ATCGCCGAGTTTGTGTGTGTGCTTATGTGAAGAAGGGCGTGGTTCAGTGTGGCGTGTGTGCGTCACTAACGGTCGTCATGAGAGGAGTGAACGATTTTCATGTTTTAATGAAAATGGTGCAATCGTAACGAATGCGAGTATATGAACATGACCGGAAAGAGCTGCTTGCTGTGTTGGGCCTGTGGAAGCGGAACCGATCCAGCGGGGGCCTCTCCTCAAGACTTCTTTCCATCTCAAGCGTACCGAATACCAGCTTCTTAATATCGACGATGGTTTCCTGAACCTGATGAATGAAAACGGCGACAGCAAGGACGACGTCAAGCTCCCCGACGGCGAGCTCGGTGACAGGATCCAGACCATGTTTGACGATGTGCAAGGACTGCAACGTTATCATCCTCGCTGTCATGGGTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7677#0 CCGGTGAGCTGCAAGCCTGGAACAATCCGCCGGAGAAGGGCGACGGTAACGTTGAAACGG 60
consensus_7677#1 ------------------------------------------------------------
consensus_7677#0 AGGAAGGCGTGCCGCTGCGCAATCAGGCCGCCGCGGTCAAGTAAACAGCGACACGGCACA 120
consensus_7677#1 ------------------------------------------------------------
consensus_7677#0 CAACCGTGGCCGCCGTGTGTTTGTGTGTGTGTGTGTGGGTGTGTCCGTTTTCTCTTACAT 180
consensus_7677#1 ------------------------------------------------------------
consensus_7677#0 ACGTCAGCAGCAAACGGTGGGGATGGTGGCGGCGGTGCTGGTGCTATATTTGGCCGATTA 240
consensus_7677#1 ------------------------------------------------------------
consensus_7677#0 GAGAGAGGTCAAACGAAGCGGCAGCAAAAGCAGTAAGATTCTCTATTTTAAAAGAGGCCA 300
consensus_7677#1 ------------------------------------------------------------
consensus_7677#0 AACAGTTAGCCGCTGCTCTTAACTCCCCTCAGCAAAAACGGCAGAGGATTTTTTTGTGAA 360
consensus_7677#1 ------------------------------------------------------------
consensus_7677#0 AAAACCCCGAATGTCGTACATTTATGCGTGTGCGTGCGCGTGTTTCGTAGTAAAAGAAGA 420
consensus_7677#1 ------------------------------------------------------------
consensus_7677#0 CACATTAAAGGAGGAAGAGCGATAGAGGGATACAGAGAGGAGATTTGTCGTAGCATTTAA 480
consensus_7677#1 ------------------------------------------------------------
consensus_7677#0 TAACTTATTGTTTTAAAAGCAACCACCCCCCCCCCCCGCATCTATCGAATCACCCGGAAA 540
consensus_7677#1 ------------------------------------------------------------
consensus_7677#0 TGCTGTGCCTCGCGTGCCGAGAGTGTGCAAATGCTGTTTTTTTAGTATTTTGTAGCCAAT 600
consensus_7677#1 ------------------------------------------------------------
consensus_7677#0 TACAGCGTTAATAGGTGTGTAGAGCAATGAGTAGGAAATAGATCAGCGGAGATAGTGGTT 660
consensus_7677#1 ------------------------------------------------------------
consensus_7677#0 TTTAATCCAGCTTTTTTCTGTTTTTGGTAGTAGAAGCAAATTGGGGGGAAAACATCATCA 720
consensus_7677#1 ------------------------------------------------------------
consensus_7677#0 GGTACGACACACACTCAGAAGAAAAAAAACCACGACCACACAGGAAAAGAAGGTGTAGGA 780
consensus_7677#1 ------------------------------------------------------------
consensus_7677#0 CCTCTTTTAGAGGGTACAAGACAGAGGAACGGAAGCGAAGTATCTGATTGATTCAGGGGG 840
consensus_7677#1 ------------------------------------------------------------
consensus_7677#0 TTTGACTTAATTTTTAAAATGTACAAAAAGCGTAATTGTGTGTGTGTGTGCTTATGTGAA 900
consensus_7677#1 ----------------------------ATCGCCGA-GTTTGTGTGTGTGCTTATGTGAA 31
* ** ** ********************
consensus_7677#0 GAAGGGCGTGGTGCAGTGTGGCGTGCGTGCGTCACTAACGGTCGTCATGAGAGGAGTGAA 960
consensus_7677#1 GAAGGGCGTGGTTCAGTGTGGCGTGTGTGCGTCACTAACGGTCGTCATGAGAGGAGTGAA 91
************ ************ **********************************
consensus_7677#0 CGATTTTCATGTTTTAATGAAAATGGTGCAATCGTAACGAATGCGAGTATATGAACATGA 1020
consensus_7677#1 CGATTTTCATGTTTTAATGAAAATGGTGCAATCGTAACGAATGCGAGTATATGAACATGA 151
************************************************************
consensus_7677#0 CCGGAAAGAGCTGCTTGCTGTGTTGGGCCTGTGGAAGCGGAACCGATCCAGCGGGGGCCT 1080
consensus_7677#1 CCGGAAAGAGCTGCTTGCTGTGTTGGGCCTGTGGAAGCGGAACCGATCCAGCGGGGGCCT 211
************************************************************
consensus_7677#0 CTCCTCAAGACTTCTTTCCATCTCAGTACGAACGGGGGGGGCGTCCACCGAATGTCACAC 1140
consensus_7677#1 CTCCTCAAGACTTCTTTCCATCTCAA-GCGTACCGAATAC-CAGCTTCTTAATATCG-AC 268
************************* ** ** * * * * *** ** **
consensus_7677#0 TGTGAGT-----AGCTTCACACACAAAAACCAATCCATCAC-----ACATGTGCTTTCCC 1190
consensus_7677#1 GATGGTTTCCTGAACCTGATGAATGAAAACGGCGACAGCAAGGACGACGTCAAGCTCCCC 328
** * * * * * * ***** ** ** ** * * ***
consensus_7677#0 AACGAATGGTGGGGCAACTGTTAACAGGAATAGATTTCTATAAATGTGCCTTTTTTTACT 1250
consensus_7677#1 GACGGCGAGCTCGGTGACAGG-ATCCAGACCATGTTTGACGATGTGCAAGGACTGCAACG 387
*** * ** ** * * * ** * *** * ** * **
consensus_7677#0 AAGAACTCTTTGATATCGCGTGTGGGGAGCGAAGGAATCTTGTTAAAGCTACTTAGCGTA 1310
consensus_7677#1 TTATCATCCTCGCTGTCATGGGTGA----------------------------------- 412
** * * * ** * ***
consensus_7677#0 CAGGTTTAGATGCGTGCGTGTGTATATGTACGTAAACATGTGTGTATGTTTAGGTCGAAT 1370
consensus_7677#1 ------------------------------------------------------------
consensus_7677#0 CATGATGCTAATCAATCTACTTAAACTTTACAGAGACACGACGGTACTTGATATTTTATT 1430
consensus_7677#1 ------------------------------------------------------------
consensus_7677#0 TACAATGTGTTTTTCCCCATTTTTTCTCTCTCTTTCCTTTCTCGTGTACCAATAATATAC 1490
consensus_7677#1 ------------------------------------------------------------
consensus_7677#0 ATACCCCCTAAGCGCGTGTACTGAACTCATTTTAAACAGATAGAAAAACTGAACAATAAA 1550
consensus_7677#1 ------------------------------------------------------------
consensus_7677#0 GTAACTGTGAACGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCGCCGCT 1610
consensus_7677#1 ------------------------------------------------------------
consensus_7677#0 CGCATCTAGAACAGCGG 1627
consensus_7677#1 -----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||