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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7683#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1473 fasta sequence
[AAGAATCGCACGAGGTTAATTGATCACAACATAGTAGTTCACGTTGGGTGATTGTACCTCGCATGCAGGGTGATGTTGATTGAGATTTTTCATAACTTTCTTTACAAACTTTAATACTTTTTTTCATTTCAGATTGCAACCATCGCATGTATTACATGCTGAAAGAACCGACATTTGGGTACGGGACACTCCAGTTCTAGATGAAAAGTTGTACAATGTGATCGAGATACACTTGCATCCAAACTATATTAACGGTTCCTACTACAACAATATAGCGATCTTAAAGATCGATTGATCATTTAACACTCTACCGGCTTGCATTTGGAATGCTCCAAATCTACCAGATCCGTTGATCGAAGTAGCAACTGTTGGGAGAGTTGACTTGATTATATATCAGTACAAAGGAAACACCATATATGATCCCAGCTATGCGTCGCTAACTCCCCGAGTTTACGCATACGACAATACAAACTGTTTACTTGCAGATCAATATAAAAAAAATCTGGTCGAAGGACTTGCACATCAGCACCTGTGCTTTGGTAATGACCCATTTCTGGTGCCTGAAGTGTGTAACCTTACCAGTGGTGGACCGCTTCAACGTTCAGTTTTTCGCCTTCAACGCCATTACAAGCATGTGTACGGAATTAGCCTTTTTGGAAGAGATTGTGGTTACGGCGAACCTGCAGTAGCTATTCGACTGCATGCTCATATGAACTGGCTAGAGTCGGTGCTTTTACCCGCCAAATTGCCAAGCCAAAATTCTCACTCTCTAGATGCTGTTCAATTCATCAACTCCGATCTGGAATTGTTTGATCGCTGTGATTTTTACGATGAGTCGGTTGGACTTTGTGTTCCCACTGAACGTTGTAGACGAGTTCGGCAACGCTTAGAACAAAATGAAGCCATGATATTCTGTGGGAATGGGACGATCATATGCTGCCTACCTAAGGACGTCTTGGATGATGAACAGCTGCTTAACGATGAAGATCAACAGTTAGAAGATTGTG-AAAATCGTTTCGAGTCATTCCGTCGGCGAAATTTTCTTAGT-AGTGCGGAGCAGCCTCAA-CGACGCCACATA-TA-GCGGAGGTA-TTTTGGATGAATG-AAAAGACTGGTGCTCAATATACACTATGTTT-GGGTTATCT-CATAACCACTGGAACTGTAATTACGAGCGCTGCG-TGCACCGAGATTGTAAACCG-AAACCCA-ATATGTTGTT--ATTTTGGACCATCCGGAGTCAATATGAAGATTTTCCTATTCGAGCACCAATTGCAACTATTATTCGCCATCCACAGTATGAGTCTGCTACAGGAGCAAATAATCTTGCTCTAATAAAACTAAGCGATCCCATAAAACCCACCGCAGCGATCTTCCCCGGTTGTTTGTGGAGAAACAAAACACACACACCGTTGGTGGCAACACTACAGACCTTTGGTTGGTTAATGGTGAACTTGTAAAGAAGTATTTGAACACATTTAT]
[+] EMBL AL929704 [AAGAATCGCACGAGGTTAATTGATCACAACATAGTAGTTCACGTTGGGTGATTGTACCTCGCATGCAGGGTGATGTTGATTGAGATTTTTCATAACTTTCTTTACAAACTTTAATACTTTTTTTCATTTCAGATTGCAACCATCGCATGTATTACATGCTGAAAGAACCGACATTTGGGTACGGGACACTCCAGTTCTAGATGAAAAGTTGTACAATGTGATCGAGATACACTTGCATCCAAACTATATTAACGGTTCCTACTACAACAATATAGCGATCTTAAAGATCGATTGATCATTTAACACTCTACCGGCTTGCATTTGGAATGCTCCAAATCTACCAGATCCGTTGATCGAAGTAGCAACTGTTGGGAGAGTTGACTTGATTATATATCAGTACAAAGGAAACACCATATATGATCCCAGCTATGCG ]
[+] EMBL BX602455 [ TTGCAACCATCGCATGTATTACATGCTGAAAGAACCGACATTTGGGTACGGGACACTCCAGTTCTAGATGAAAAGTTGTACAATGTGATCGAGATACACTTGCATCCAAACTATATTAACGGTTCCTACTACAACAATATAGCGATCTTAAAGATCGATCGATCATTTAACACTCTACCGGCTTGCATTTGGAATGCTCCAAATCTACCAGATCCGTTGATCGAAGTAGCAACTGTTGGGAGAGTTGACTTGATTATATATCAGTACAAAGGAAACACCATATATGATCCCAGCTATGCGTCGCTAACTCCCCGAGTTTACGCATACGACAATACAAACTGTTTACTTGCAGATCAATATAAAAAAAATCTGGTCGAAGGACTTGCACATCAGCACCTGTGCTTTGGTAATGACCCATTTCTGGTGCCTGAAGTGTGTAACCTTACCAGTGGTGGACCGCTTCAACGTTCAGTTTTTCGCCTTCAACGCCATTACAAGCATGTGTACGGAATTAGCCTTTTTGGAAGAGATTGTGGTTACGGCGAACCTGCAGTAGCTATTCGACTGCATGCTCATATGAACTGGCTAGAGTCGGTGCTTTTACCCGCCAAATTGCCAAGCCAAAATTCTCACTCTCTAGATGCTGTTCAATTCATCAACTCCGATCTGGAATTGTTTGATCGCTGTGATTTTTACGATGAGTCGGTTGGACTTTGTGTT CCACTGAA ]
[+] EMBL BM595410 [ ccgAAGGAAACACCATATATGATCCCAGCTATGCGTCGCTAACTCCCCGAGTTTACGCATACGACAATACAAACTGTTTACTTGCAGATCAATATAAAAAAAATCTGGTCGAAGGACTTGCACATCAGCACCTGTGCTTTGGTAATGACCCATTTCTGGTGCCTGAAGTGTGTAACCTTACCAGTGGTGGACCGCTTCAACGTTCAGTTTTTCGCCTTCAACGCCATTACAAGCATGTGTACGGAATTAGCCTTTTTGGAAGAGATTGTGGTTACGGCGAACCTGCAGTAGCTATTCGACTGCATGCTCATATGAACTGGCTAGAGTCGGTGCTTTTACCCGCCAAATTGCCAAGCCAAAATTCTCACTCTCTAGATGCTGTTCAATTCATCAACTCCGATCTGGAATTGTTTGATCGCTGTGATTTTTACGATGAGTCGGTTGGACTTTGTGTTCCCACTGAACGTTGTAGACGAGTTCGGCAACGCTTAGAACAAAATGAAGCCATGATATTCTGTGGGAATGGGACGATCATATGCTGCCTACCTAAGGACGTCTTGGATGATGAACAGCTGCTTAACGATGAAGATCAACAGTTAGAAGATTGTG AAAATCGTTTCGAGTCATTCCGTCGGCGAAATTTTCTTAGT AGTGCGGAGCAGCC ]
[+] EMBL BM595391 [ ccgAACGAAGCACCATATATGATCCCAGCTATGCGTCGCTAACTCCCCGAGTTTACGCATACGACAATACAAACTGTTTACTTGCAGATCAATATAAAAAAAATCTGGTCGAAGGACTTGCACATCAGCACCTGTGCTTTGGTAATGACCCATTTCTGGTGCCTGAAGAGTGTAACCTTACCAGTGGTGGACCGCTTCAACGTTCAGTTTTTCGCCTTCAACGCCATTACGAGCATGTGTACGGAATTAGCCTTTTTGGAAGAGATTGTGGTTACGGCGAACCTGCAGTAGCTATTCGACTGCATGCTCATATGAACTGGCTAGAGTCGGTGCTTTTACCCGCCAAATTGCCAAGCCAAAATTCTCACTCTCTAGATGCTGTTCAATTCATCAACTCCGAT ]
[+] EMBL BM631410 [ ccgCGACAATACAAACTGTTTACTTGCAGATCAATATAAAAAAAATCTGGTCGAAGGACTTGCACATCAGCACCTGTGCTTTGGTAATGACCCATTTCTGGTGCCTGAAGTGTGTAACCTTACCAGTGGTGGACCGCTTCAACGTTCAGTTTTTCGCCTTCAACGCCATTACAAGCATGTGTACGGAATTAGCCTTTTTGGAAGAGATTGTGGTTACGGCGAACCTGCAGTAGCTATTCGACTGCATGCTCATATGAACTGGCTAGAGTCGGTGCTTTTACCCGCCAAATTGCCAAGCCAAAATTCTCACTCTCTAGATGCTGTTCAATTCATCAACTCCGATCTGGAATTGTTTGATCGCTGTGATTTTTACGATGAGTCGGTTGGACTTTGTGTTCCCACTGAACGTTGTAGACGAGTTCGGCAACGCTTAGAACAAAATGAAGCCATGATATTCTGTGGGAATGGGACGATCATATGCTGCCTACCTAAGGACGTCTTGGATGATGAACAGCTGCTTAACGATGAAGATCAACAGTTAGAAGA ]
[+] EMBL AL695704 [ ccgagGTTCAATTCATCAACTCCGATCTGGAATTGTTTGATCGCTGTGATTTTTACGATGAGTCGGTTGGACTTTGTGTTCCCACTGAACGTTGTAGACGAGTTCGGCAACGCTTAGAACAAAATGAAGCCATGATATTCTGTGGGAATGGGACGATCATATGCTGGCTACCTAAGGACGTCTTGGATGATGAACAGCTGCTTAACGATGAAGATCAACAGTTA AAGATTGTGAAAAATCG TTCGAGTCATTCCGTCGGCGAAATTTTCTTAGTAAGTGCGGAGCAGCCTCAA CGACGCCACATATTATGCGGAGGTATTTTTGGATGAATGAAAAAGACTGGTGCTCAATATACACTATGTTTGGGGTTATCTCCATAACCACTGGAACTGTAATTACGAGCGCTGCGTTGCACCGAGATTGTAAACCG AAACCCACATATGTTGTTTCATTTTGG ]
[+] EMBL BX609906 [ TTAGAAGATTGTG AAAATCGTTTCGAGTCATTCCGTCGGCGAAATTTTCTTAGT AGTGCGGAGCAGCCTCAACCGAAGCCACATA TA GCGGAGGTA GTTTGGATGAATG AAAAGACTGGTGCTCAATATACACTATGTTT GGGTTACCT CATAACCACTGGAACTGTAATTACGAGCGCTGCG TGCACCGAGATTGTAAACCGCAAACCCA ATATGTTGTT ATTTGGTACCATCCGGAGTCAATATGAAGATTTTCCTATTCGAGCACCAATTGCAACTATTATTCGCCATCCACAGTATGAGTCTGCTACAGGAGCAAATAATCTTGCTCTAATAAAACTAAGCGATCCCATAAAACCCACCGCAGCGATCTTCCCCGGTTGTTTGTGGAGAAACAAAACACACACACCGTTGGTGGCAACACTACAGACCTTTGGTTGGTTAATGGTGAACTTGTAAAGAAGTATTTGAACACATTTAT]
consensusID : consensus_7683#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 787 fasta sequence
[CAGAATCCCCCGAGGTTGTTCGAGTCATTCCGTCGGCGAAATTTCTTAGTAGTGCGGAGCAGCCTCAACGACGCCACATATAGCGGAGGTAGTTTGGATGAATGAAAAGACTGGTGCTCAATATACACTATGTTTGGGTTATCTCATAACCACTGGAACTGTAATTACGAGCGCTGCGTGCACCGAGATTGTAAACCGCAAACCCAATATGTTTGTTATTTTGGTACCATCCGGAGTCAATATGAAGATTTTCCTATTCGAGCACCAATTGCAACTATTATTCGCCATCCACAGTATGAGTCTGCTACAGGAGCAAATAATCTTGCTCTAATAAAACTAAGCGATCCCATAAAACCCACCGCAGCGATCTTCCCCGGTTGTTTTGTGGAGAAACAAAAACACACACCGTTGGTGGCAACACTACAGACCTTTGTTCAATCACAACTACGGCAATCATCGGTGCATCCCGTCTACGATTCTGATTGCAAGCGGTACGTAAAAACGTCATTGCACGGTGGGGAATTTTGTATGCATTCTACGACCTCGCAATCAACAAACACAGCAGGTCTTATCGTTTGGCGTGGAAAAGGAACCAAAAACGCTCCGGTTGAGTATTTGATCGGGGTATACAGCCGCGGTGGCAACTATGAAGCTGACGAGCCGCTGATTAATACGCCGTATTTCGGAATATGTTCCATGGNTAATAGATAACCTTTACACTGAATCAGTCTAATGAGGAGTATTTATGCTTCTAATAAAACTAGCAGATAAGGTGATCCTCTTAATC]
[+] EMBL AL931992 [CAGAATCCCCCGAGGTTGTTCGAGTCATTCCGTCGGCGAAATTTCTTAGTAGTGCGGAGCAGCCTCAACGACGCCACATATAGCGGAGGTAGTTTGGATGAATGAAAAGACTGGTGCTCAATATACACTATGTTTGGGTTATCTCATAACCACTGGAACTGTAATTACGAGCGCTGCGTGCACCGAGATTGTAAACCGCAAACCCAATATGTTTGTTATTTTGGTACCATCCGGAGTCAATATGAAGATTTTCCTATTCGAGCACCAATTGCAACTATTATTCGCCATCCACAGTATGAGTCTGCTACAGGAGCAAATAATCTTGCTCTAATAAAACTAAGCGATCCCATAAAACCCACCGCAGCGATCTTCCCCGGTTGTTTTGTGGAGAAACAAAAACACACACCGTTGGTGGCAACACTACAGACCTTTGTTCAATCACAACTACGGCAATCATCGGTGCATCCCGTCTACGATTCTGATTGCAAGCGGTACGTAAAAACGTCATTGCACGGTGGGGAATTTTGTATGCATTCTACGACCTCGCAATCAACAAACACAGCAGGTCTTATCGTTTGGCGTGGAAAAGGAACCAAAAACGCTCCGGTTGAGTATTTGATCGGGGTATACAGCCGCGGTGGCAACTATGAAGCTGACGAGCCGCTGATTAATACGCCGTATTTCGGAATATGTTCCATGGNTAATAGATAACCTTTACACTGAATCAGTCTAATGAGGAGTATTTATGCTTCTAATAAAACTAGCAGATAAGGTGATCCTCTTAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7683#0 AAGAATCGCACGAGGTTAATTGATCACAACATAGTAGTTCACGTTGGGTGATTGTACCTC 60
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 GCATGCAGGGTGATGTTGATTGAGATTTTTCATAACTTTCTTTACAAACTTTAATACTTT 120
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 TTTTCATTTCAGATTGCAACCATCGCATGTATTACATGCTGAAAGAACCGACATTTGGGT 180
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 ACGGGACACTCCAGTTCTAGATGAAAAGTTGTACAATGTGATCGAGATACACTTGCATCC 240
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 AAACTATATTAACGGTTCCTACTACAACAATATAGCGATCTTAAAGATCGATTGATCATT 300
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 TAACACTCTACCGGCTTGCATTTGGAATGCTCCAAATCTACCAGATCCGTTGATCGAAGT 360
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 AGCAACTGTTGGGAGAGTTGACTTGATTATATATCAGTACAAAGGAAACACCATATATGA 420
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 TCCCAGCTATGCGTCGCTAACTCCCCGAGTTTACGCATACGACAATACAAACTGTTTACT 480
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 TGCAGATCAATATAAAAAAAATCTGGTCGAAGGACTTGCACATCAGCACCTGTGCTTTGG 540
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 TAATGACCCATTTCTGGTGCCTGAAGTGTGTAACCTTACCAGTGGTGGACCGCTTCAACG 600
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 TTCAGTTTTTCGCCTTCAACGCCATTACAAGCATGTGTACGGAATTAGCCTTTTTGGAAG 660
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 AGATTGTGGTTACGGCGAACCTGCAGTAGCTATTCGACTGCATGCTCATATGAACTGGCT 720
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 AGAGTCGGTGCTTTTACCCGCCAAATTGCCAAGCCAAAATTCTCACTCTCTAGATGCTGT 780
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 TCAATTCATCAACTCCGATCTGGAATTGTTTGATCGCTGTGATTTTTACGATGAGTCGGT 840
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 TGGACTTTGTGTTCCCACTGAACGTTGTAGACGAGTTCGGCAACGCTTAGAACAAAATGA 900
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 AGCCATGATATTCTGTGGGAATGGGACGATCATATGCTGCCTACCTAAGGACGTCTTGGA 960
consensus_7683#1 ------------------------------------------------------------
consensus_7683#0 TGATGAACAGCTGCTTAACGATGAAGATCAACAGTTAGAAGATTGTGAAAATCGTTTCGA 1020
consensus_7683#1 -----------------------------------CAGAATCCCCCGAGGTT--GTTCGA 23
**** ** * *****
consensus_7683#0 GTCATTCCGTCGGCGAAATTTTCTTAGTAGTGCGGAGCAGCCTCAACGACGCCACATATA 1080
consensus_7683#1 GTCATTCCGTCGGCGAAATTT-CTTAGTAGTGCGGAGCAGCCTCAACGACGCCACATATA 82
********************* **************************************
consensus_7683#0 GCGGAGGTATTTTGGATGAATGAAAAGACTGGTGCTCAATATACACTATGTTTGGGTTAT 1140
consensus_7683#1 GCGGAGGTAGTTTGGATGAATGAAAAGACTGGTGCTCAATATACACTATGTTTGGGTTAT 142
********* **************************************************
consensus_7683#0 CTCATAACCACTGGAACTGTAATTACGAGCGCTGCGTGCACCGAGATTGTAAACCG-AAA 1199
consensus_7683#1 CTCATAACCACTGGAACTGTAATTACGAGCGCTGCGTGCACCGAGATTGTAAACCGCAAA 202
******************************************************** ***
consensus_7683#0 CCCAATATGTT-GTTATTTTGG-ACCATCCGGAGTCAATATGAAGATTTTCCTATTCGAG 1257
consensus_7683#1 CCCAATATGTTTGTTATTTTGGTACCATCCGGAGTCAATATGAAGATTTTCCTATTCGAG 262
*********** ********** *************************************
consensus_7683#0 CACCAATTGCAACTATTATTCGCCATCCACAGTATGAGTCTGCTACAGGAGCAAATAATC 1317
consensus_7683#1 CACCAATTGCAACTATTATTCGCCATCCACAGTATGAGTCTGCTACAGGAGCAAATAATC 322
************************************************************
consensus_7683#0 TTGCTCTAATAAAACTAAGCGATCCCATAAAACCCACCGCAGCGATCTTCCCCGGTTGTT 1377
consensus_7683#1 TTGCTCTAATAAAACTAAGCGATCCCATAAAACCCACCGCAGCGATCTTCCCCGGTTGTT 382
************************************************************
consensus_7683#0 T-GTGGAGAAACAAAACACACACACCGTTGGTGGCAACACTACAGACCTTTGGTTGGTTA 1436
consensus_7683#1 TTGTGGAGAAACAAAA-ACACACACCGTTGGTGGCAACACTACAGACCTTTGTTCAATCA 441
* ************** *********************************** * * *
consensus_7683#0 ATGGTGAACTTGTAAA-GAAGTATTTGAAC-ACATTTAT--------------------- 1473
consensus_7683#1 CAACTACGGCAATCATCGGTGCATCCCGTCTACGATTCTGATTGCAAGCGGTACGTAAAA 501
* * * * * ** * ** ** *
consensus_7683#0 ------------------------------------------------------------
consensus_7683#1 ACGTCATTGCACGGTGGGGAATTTTGTATGCATTCTACGACCTCGCAATCAACAAACACA 561
consensus_7683#0 ------------------------------------------------------------
consensus_7683#1 GCAGGTCTTATCGTTTGGCGTGGAAAAGGAACCAAAAACGCTCCGGTTGAGTATTTGATC 621
consensus_7683#0 ------------------------------------------------------------
consensus_7683#1 GGGGTATACAGCCGCGGTGGCAACTATGAAGCTGACGAGCCGCTGATTAATACGCCGTAT 681
consensus_7683#0 ------------------------------------------------------------
consensus_7683#1 TTCGGAATATGTTCCATGGNTAATAGATAACCTTTACACTGAATCAGTCTAATGAGGAGT 741
consensus_7683#0 ----------------------------------------------
consensus_7683#1 ATTTATGCTTCTAATAAAACTAGCAGATAAGGTGATCCTCTTAATC 787
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||