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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7684#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[AATCGCCCGAGGTTATAACAGNCACTTATGCAACTTTTGTACCGCTAATATNNATGAGTATCGTGTAGATAAACACAACATTNGCGCAGCAAAAACGAATCGAAATGAACGCAATCGTGCAGAGACGCATGGATTNGTGCTTCTCGTCGCTGCTTCAACGCCGATTGTTGTCGAGCGCGGTACCAACATGCATGCTGACTGCCAGCTCGGTGCATGCTGAGTCAANCACCTGCATCAAACCGGGCTGAAGGAGAATTTGCAACATNAAACATTCGTTTCTTCGGTGTNGCGGTAGAGGGAGGAGGCTGTATCTGGCTTTCAGTACAAATTTCTCCGTTGAAAAGCAGCGTCGGCGAACGATGACAGTTATCTGTGAGCCGTGACTGGTGTGCAGGTGGCCATCGATAGTGCTTCTGATCGAGTACCTGTCCGGGTGCTACCATCGATTACCACGACCGAGTCTGATACGTTCCGGGTTTCGTGTGATTAACAATCCGAAAGCGGACCAAGGATGCTCGTGTGGTGCCTCGTNCACGGTGAAATTGGACGTAGGCCCCGTAAGGTGTAAATACTTGATGTTTTAAAAGAGTAATGTACAAGATATAATCAACGCGTTCAATATTTAAGGANATGCAACAAAAGAATGACCAGACGACATNGNANAGNNANGATAACAATAAANATAACTAAAC]
[+] EMBL AL930880 [AATCGCCCGAGGTTATAACAGNCACTTATGCAACTTTTGTACCGCTAATATNNATGAGTATCGTGTAGATAAACACAACATTNGCGCAGCAAAAACGAATCGAAATGAACGCAATCGTGCAGAGACGCATGGATTNGTGCTTCTCGTCGCTGCTTCAACGCCGATTGTTGTCGAGCGCGGTACCAACATGCATGCTGACTGCCAGCTCGGTGCATGCTGAGTCAANCACCTGCATCAAACCGGGCTGAAGGAGAATTTGCAACATNAAACATTCGTTTCTTCGGTGTNGCGGTAGAGGGAGGAGGCTGTATCTGGCTTTCAGTACAAATTTCTCCGTTGAAAAGCAGCGTCGGCGAACGATGACAGTTATCTGTGAGCCGTGACTGGTGTGCAGGTGGCCATCGATAGTGCTTCTGATCGAGTACCTGTCCGGGTGCTACCATCGATTACCACGACCGAGTCTGATACGTTCCGGGTTTCGTGTGATTAACAATCCGAAAGCGGACCAAGGATGCTCGTGTGGTGCCTCGTNCACGGTGAAATTGGACGTAGGCCCCGTAAGGTGTAAATACTTGATGTTTTAAAAGAGTAATGTACAAGATATAATCAACGCGTTCAATATTTAAGGANATGCAACAAAAGAATGACCAGACGACATNGNANAGNNANGATAACAATAAANATAACTAAAC]
consensusID : consensus_7684#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 633 fasta sequence
[CCGCGAAAGATGGTCATTGCAGGCCGGCGCAATAAACAGTCACCTTATGCAATTTTGTACCGCAATATGATGAGTATCGTGTAGATAAACACAACATTTGCGCAGCAAAAACGAATCGAAATGAACGCAATCGTGCAGAGACGCATTGGATTGTGCTTCTCGTCGCTGCTTCAACGCCGATTGTTGTCGAGCGCGGCACCAAATGCAGCTGATGCCAGCTCGGTGCAGCTGAGCAACACCTGCATCAACCGGCTGAAGGAGATTTGCAAACAAAATTCGTTTCTTCGTGTTGCGGTAGAGGGAGGAGGCTGTTCTGGCTTTCAGTACAAATTCTCCGTTGAAAAGCAGCTCGGCGAAGATGACATTATCGTGAGCCGTGACGGTGTGCAGGTGGCCATCGATAGTGCTTCGATCGAGTACCTGTCCGGGGCTACCATCGATTACCACACCGAGCTGATACGTTCCGGGTTTCGTGTGATTAACAATCCGAAAGCGGACCAAGGATGCTCGTGTGGTGCCTCGTTCACGGTGAAATTGGACTAGCCCCTAAGGTGTAAATA-TTGATGTTTTAAAAAGTAATGTAAAATATAATCAACGCGTTCAATATTAAAAAAAAAAAAAAAAAGGAAAAAA]
[+] EMBL BM628623 [CCGCGAAAGATGGTCATTGCAGGCCGGCGCAATAAACAGTCACCTTATGCAATTTTGTACCGCAATATGATGAGTATCGTGTAGATAAACACAACATTTGCGCAGCAAAAACGAATCGAAATGAACGCAATCGTGCAGAGACGCATTGGATTGTGCTTCTCGTCGCTGCTTCAACGCCGATTGTTGTCGAGCGCGGCACCAAATGCAGCTGATGCCAGCTCGGTGCAGCTGAGCAACACCTGCATCAACCGGCTGAAGGAGATTTGCAAACAAAATTCGTTTCTTCGTGTTGCGGTAGAGGGAGGAGGCTGTTCTGGCTTTCAGTACAAATTCTCCGTTGAAAAGCAGCTCGGCGAAGATGACATTATCGTGAGCCGTGACGGTGTGCAGGTGGCCATCGATAGTGCTTCGATCGAGTACCTGTCCGGGGCTACCATCGATTACCACACCGAGCTGATACGTTCCGGGTTTCGTGTGATTAACAATCCGAAAGCGGACCAAGGATGCTCGTGTGGTGCCTCGTTCACGGTGAAATTGGACTAGCCCCTAAGGTGTAAATATTTGATGGTTTAAAAAGTAA ]
[+] EMBL BM656122 [ ccgGGTCATTGCAGGCCGGCGCAATAAACAGTCACCTTATGCAATTTTGTACCGCAATATGATGAGTATCGTGTAGATAAACACAACATTTGCGCAGCAAAAGCAAATCGAAATGAACGCAATCGTGCAGAGACGCATTGGATTGTGCTTCTCGTCGCTGCTTCAACGCCGATTGTTGTCGAGCGCGGCACCAAATGCAGCTGATGCCAGCTCGGTGCAGCTGAGCAACACCTGCATCAACCGGCTGAAGGAGATTTGCAAACAAAATTCGTTTCTTCGTGTTGCGGTGGAGGGAGGAGGCTGTTCTGGCTTTCAGTACAAATTCTCCGTTGAAAAGCAGCTCGGCGAAGATGACATTATCGTGAGCCGTGACGGTGTGCAGGTGGCCATCGATAGTGCTTCGATCGAGTACCTGTCCGGGGCTACCATCGATTACCACACCGAGCTGATACGTTCCGGGTTTCGTGTGATTAACAATCCGAAAGCGGACCAAGGATGCTCGTGTGGTGCCTCGTTCACGGTGAAATTGGATTAACCCCTAAGGTGTAAATA TTGATGTTTTAA ]
[+] EMBL BM586291 [ cCGCAATAAACAGTCACCTTATGCAATTTTGTACCGCAATACGATGAGTATCGTGTAGATAAACACAACATTTACGCAGCAAAAACGAATCGAAATGAACGCAATCGTGCAGAGACGCATTGGATTGTGCTTCTCGTCGCTGCTTCAACGCCGATTGTTGTCGAGCGCGGCACCAAATGCAGCTGATGCCAGCTCGGTGCAGCTGAGCAACACCTGCATCAACCGGCTGAAGGAGATTTGCAAACAAAATTCGTTTCTTCGTGTTGCGGTAGAGGGAGGAGGCTGTTCTGGCTTTCAGTACAAATTCTCCGTTGAAAAGCAGCTCGGCGAAGATGACATTATCGTGAGCCGTGACGGTGTGCAGGTGGCCATCGATAGTGCTTCGATCGAGTACCTGTCCGGGGCTACCATCGATTACCACACCGAGCTGATACGCTCCGGGTTTCGTGTGGTTAACAATCCGAAAGCGGACCAAGGATGCTCGTGTGGTGCCTCGTTCACGGTGAAATTGGACTAGCCCCTAAGGTGTAAATA TTGATGTTTT ]
[-] EMBL CNS0919F [ TATGATGAGTATCGTGTAGATAAACACAACATTTGCGCAGCAAAAACGAATCGAAATGAACGCAATCGTGCAGAGACGCATTGGATTGTGCTTCTCGTCGCTGCTTCAACGCCGATTGTTGTCGAGCGCGGCACCAAATGCAGCTGATGCCAGCTCGGTGCAGCTGAGCAACACCTGCATCAACCGGCTGAAGGAGATTTGCAAACAAAATTCGTTTCTACGTGTTGCGGTAGAGGGAGGAGGCTGTTCTGGCTTTCAGTACAAATTCTCCGTTGAAAAGCAGCTCGGCGAAGATGACATTATCGTGAGCCGTGACGGTGTGCAGGTGGCCATCGATAGTGCTTCGATCGAGTACCTGTCCGGGGCTACCATCGATTACCACACCGAGCTGATACGTTCCGGGTTTCGTGTGATTAACAATCCGAAAGCGGACCAAGGATGCTCGTGTGGTGCCTCGTTCACGGTGAAATTGGACTAGCCCCTAAGGTGTAAATA TTGATGTTTTAAAAAGTAATGTAAAATATAATCAACGCGTTCAATATTAAAAAAAAAAAAAAAAAGGAAAAAA]
[+] EMBL BM654481 [ cCGTGTAGATAAACACAACATTTACGCAGCAAAAACGAATCGAAATGAACGCAATCGTGCAGAGACGCATTGGATTGTGCTTCTCGTCGCTGCTTCAACGCCGATTGTTGTCGAGCGCGGCACCAAATGCAGCTGATGCCAGCTCGGTGCAGCTGAGCAACACCTGCATCAACCGGCTGAAGGAGATTTGCAAACAAAATTCGTTTCTTCGTGTTGCGGTAGAGGGAGGAGGCTGTTCTGGCTTTCAGTACAAATTCTCCGTTGAAAAGCAGCTCGGCGAAGATGACATTATCGTGAGCCGTGACGGTGTGCAGGTGGCCATCGATAGTGCTTCGATCGAGTACCTGTCCGGGGCTACCATCGATTACCACACCGAGCTGATACGCTCCGGGTTTCGTGTGGTTAACAATCCGAAAGCGGACCAAGGATGCTCGTGTGGTGCCTCGTTCACGGTGAAATTGGACTAGCCCCTAAGGTGTAAATA TTGATGTTTTAAAAAGTAATGTAAAATATAATCAACGCGTTC ]
consensusID : consensus_7684#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 620 fasta sequence
[CCGGGATGGTCATTGCAGGCCGGCGCAATAAACAGTCACCTTATGCAATTTTGTACCGCAATCATCATGAGTATCGTGTAGAAAAACAAAACATTTGCGCAGCAAAAACGAATCGAAATGAACGCAATCGTGCAGAGACGCATTGGATTGTGCTTCTCGTCGCTGCTTCAACGCCGATTGTTGTCGAGCGCGGCACCAAATGCAGCTGATGCCAGCTCGGTGCAGCTGAGCAACACCTGCATCAACCGGCTGAAGGAGATTTGCAAACAAAATTCGTTTCTTCGTGTTGCGGTAGAGGGAGGAGGCTGTTCTGGCTTTCAGTACAAATTCTCCGTTGAAAAGCAGCTCGGCGAAGATGACATTATCGTGAGCCGTGACGGTGTGCAGGTGGCCATCGATAGTGCTTCGATCGAGTACCTGTCCGGGGCTACCATCGATTACCACACCGAGCTGATACGTTCCGGGTTTCGTGTGATTAACAATCCGAAAGCGGACCAAGGATGCTCGTGTGGTGCCTCGTTCACGGTGAAATTGGACTAGCCCCTAAGGTGTAAATATTGATGTTTTAAAAAGTAATGTAAAATATAATCAACGCGTTCAATATTTATTTTAGTTCTTTC]
[+] EMBL BM575625 [CCGGGATGGTCATTGCAGGCCGGCGCAATAAACAGTCACCTTATGCAATTTTGTACCGCAATCATCATGAGTATCGTGTAGAAAAACAAAACATTTGCGCAGCAAAAACGAATCGAAATGAACGCAATCGTGCAGAGACGCATTGGATTGTGCTTCTCGTCGCTGCTTCAACGCCGATTGTTGTCGAGCGCGGCACCAAATGCAGCTGATGCCAGCTCGGTGCAGCTGAGCAACACCTGCATCAACCGGCTGAAGGAGATTTGCAAACAAAATTCGTTTCTTCGTGTTGCGGTAGAGGGAGGAGGCTGTTCTGGCTTTCAGTACAAATTCTCCGTTGAAAAGCAGCTCGGCGAAGATGACATTATCGTGAGCCGTGACGGTGTGCAGGTGGCCATCGATAGTGCTTCGATCGAGTACCTGTCCGGGGCTACCATCGATTACCACACCGAGCTGATACGTTCCGGGTTTCGTGTGATTAACAATCCGAAAGCGGACCAAGGATGCTCGTGTGGTGCCTCGTTCACGGTGAAATTGGACTAGCCCCTAAGGTGTAAATATTGATGTTTTAAAAAGTAATGTAAAATATAATCAACGCGTTCAATATTTATTTTAGTTCTTTC]
[+] EMBL BM628841 [ ccgCATGAGTATCGTGTAGAAAAACAAAACATTTGCGCAGCAAAAACGAATCGAAATGAACGCAATCGTGCAGAGACGCATTGGATTGTGCTTCTCGTCGCTGCTTCAACGCCGATTGTTGTCGAGCGCGGCACCAAATGCAGCTGATGCCAGCTCGGTGCAGCTGAGCAACACCTGCATCAACCGGCTGAAGGAGATTTGCAAACAAAATTCGTTTCTTCGTGTTGCGGTAGAGGGAGGAGGCTGTTCTGGCTTTCAGTACAAATTCTCCGTTGAAAAGCAGCTCGGCGAAGATGACATTATCGTGAGCCGTGACGGTGTGCAGGTGGCCATCGATAGTGCTTCGATCGAGTACCTGTCCGGGGCTACCATCGATTACCACACCGAGCTGATACGTTCCGGGTTTCGTGTGATTAACAATCCGAAAGCGGACCAAGGATGCTCGTGTGGTGCCTCGTTCACGGTGAAATTGGACTAGCCCCTAAGGTGTAAATATTGATGTTTTAAAAAGTAATGTAAAATATAATCAACGCGTTCAATATTTAaaatcgg ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7684#1 CCGCGAAAGATGGTCATTGCAGGCCGGCGCAATAAACAGTCACCTTATGCAA-TTTTGTA 59
consensus_7684#2 ----CCGGGATGGTCATTGCAGGCCGGCGCAATAAACAGTCACCTTATGCAA-TTTTGTA 55
consensus_7684#0 -----------------AATCGCCCGAGGTTATAA-CAGNCAC-TTATGCAACTTTTGTA 41
* *** * **** *** *** ******** *******
consensus_7684#1 CCGC-AAT-ATGATGAGTATCGTGTAGATAAACACAACATTTGCGCAGCAAAAACGAATC 117
consensus_7684#2 CCGC-AATCATCATGAGTATCGTGTAGAAAAACAAAACATTTGCGCAGCAAAAACGAATC 114
consensus_7684#0 CCGCTAATATNNATGAGTATCGTGTAGATAAACACAACATTNGCGCAGCAAAAACGAATC 101
**** *** **************** ***** ****** ******************
consensus_7684#1 GAAATGAACGCAATCGTGCAGAGACGCATTGGATTGTGCTTCTCGTCGCTGCTTCAACGC 177
consensus_7684#2 GAAATGAACGCAATCGTGCAGAGACGCATTGGATTGTGCTTCTCGTCGCTGCTTCAACGC 174
consensus_7684#0 GAAATGAACGCAATCGTGCAGAGACGCATGGATTNGTGCTTCTCGTCGCTGCTTCAACGC 161
***************************** * * *************************
consensus_7684#1 CGATTGTTGTCGAGCGCGGCACCAA-ATGCA-GCTGA-TGCCAGCTCGGTGCA-GCTGAG 233
consensus_7684#2 CGATTGTTGTCGAGCGCGGCACCAA-ATGCA-GCTGA-TGCCAGCTCGGTGCA-GCTGAG 230
consensus_7684#0 CGATTGTTGTCGAGCGCGGTACCAACATGCATGCTGACTGCCAGCTCGGTGCATGCTGAG 221
******************* ***** ***** ***** *************** ******
consensus_7684#1 C--AACACCTGCATCAACC--GGCTGAAGGAGA-TTTGCAA---ACAAAATTCGTTTCTT 285
consensus_7684#2 C--AACACCTGCATCAACC--GGCTGAAGGAGA-TTTGCAA---ACAAAATTCGTTTCTT 282
consensus_7684#0 TCAANCACCTGCATCAAACCGGGCTGAAGGAGAATTTGCAACATNAAACATTCGTTTCTT 281
* ************ * ************ ******* ** ***********
consensus_7684#1 CG-TGTTGCGGTAGAGGGAGGAGGCTGT-TCTGGCTTTCAGTACAAATT-CTCCGTTGAA 342
consensus_7684#2 CG-TGTTGCGGTAGAGGGAGGAGGCTGT-TCTGGCTTTCAGTACAAATT-CTCCGTTGAA 339
consensus_7684#0 CGGTGTNGCGGTAGAGGGAGGAGGCTGTATCTGGCTTTCAGTACAAATTTCTCCGTTGAA 341
** *** ********************* ******************** **********
consensus_7684#1 AAGCAGC-TCGGCGAA-GATGACA-TTATC-GTGAGCCGTGAC-GGTGTGCAGGTGGCCA 397
consensus_7684#2 AAGCAGC-TCGGCGAA-GATGACA-TTATC-GTGAGCCGTGAC-GGTGTGCAGGTGGCCA 394
consensus_7684#0 AAGCAGCGTCGGCGAACGATGACAGTTATCTGTGAGCCGTGACTGGTGTGCAGGTGGCCA 401
******* ******** ******* ***** ************ ****************
consensus_7684#1 TCGATAGTGCTTC-GATCGAGTACCTGTCCGGG-GCTACCATCGATTACCAC-ACCGAG- 453
consensus_7684#2 TCGATAGTGCTTC-GATCGAGTACCTGTCCGGG-GCTACCATCGATTACCAC-ACCGAG- 450
consensus_7684#0 TCGATAGTGCTTCTGATCGAGTACCTGTCCGGGTGCTACCATCGATTACCACGACCGAGT 461
************* ******************* ****************** ******
consensus_7684#1 CTGATACGTTCCGGGTTTCGTGTGATTAACAATCCGAAAGCGGACCAAGGATGCTCGTGT 513
consensus_7684#2 CTGATACGTTCCGGGTTTCGTGTGATTAACAATCCGAAAGCGGACCAAGGATGCTCGTGT 510
consensus_7684#0 CTGATACGTTCCGGGTTTCGTGTGATTAACAATCCGAAAGCGGACCAAGGATGCTCGTGT 521
************************************************************
consensus_7684#1 GGTGCCTCGTTCACGGTGAAATTGGAC-TAGCCCC--TAAGGTGTAAATA-TTGATGTTT 569
consensus_7684#2 GGTGCCTCGTTCACGGTGAAATTGGAC-TAGCCCC--TAAGGTGTAAATA-TTGATGTTT 566
consensus_7684#0 GGTGCCTCGTNCACGGTGAAATTGGACGTAGGCCCCGTAAGGTGTAAATACTTGATGTTT 581
********** **************** *** *** ************* *********
consensus_7684#1 TAAAA-AGTAATGTA--AAATATAATCAACGCGTTCAATATTAAAAAAAAAAAAAAAAAG 626
consensus_7684#2 TAAAA-AGTAATGTA--AAATATAATCAACGCGTTCAATATTTATTTTAGTTCTTTC--- 620
consensus_7684#0 TAAAAGAGTAATGTACAAGATATAATCAACGCGTTCAATATTTAAGGANATGCAACAAAA 641
***** ********* * *********************** *
consensus_7684#1 GAAAAAA-------------------------------------------- 633
consensus_7684#2 ---------------------------------------------------
consensus_7684#0 GAATGACCAGACGACATNGNANAGNNANGATAACAATAAANATAACTAAAC 692
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||