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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7699#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 707 fasta sequence
[CCGCCCACGCGTCCGTGCAACAGTAGGGTTACCAAGTAATAATCTTTATTAGCTTTCTAGACTCCATGACGGTTTTATGTGTTTGCAGAAAGTGAAGTAATAGAAAATGTTATTTTTTAAAGTATTGAAACATCCTTTAGCGCGCGGGATGGTTACGTATTCCGTCTTATGGCCCACAGCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAGAGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGACGATCTATGGATGGGTAAAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATTATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTGACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACATATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCCGAACGGAATCGTGTGCTATTTGTT-GCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCTTCTATCAAAAATAACTGTATTTCGAATCAAAACTAACATCTGACGAAATAAACAAAACTGCAACGTAGCAAACAGAAAAAAAAAAAAAAAAAAGGGCCACATGCCCCCC]
[+] EMBL BM599855 [CCGCCCACGCGTCCGTGCAACAGTAGGGTTACCAAGTAATAATCTTTATTAGCTTTCTAGACTCCATGACGGTTTTATGTGTTTGCAGAAAGTGAAGTAATAGAAAATGTTATTTTTTAAAGTATTGAAACATCCTTTAGCGCGCGGGATGGTTACGTATTCCGTCTTATGGCCCACAGCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAGAGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGACGATCTATGGATGGGTAAAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATTATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTGACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACATATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCCGAACGGAATCGTGTGCTATTTGTT GCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCTTCTATCAAAAATAACTGTATTTCGAATCAAAACTAACATCTGACGAAATAAACAAAACTGCA ]
[+] EMBL BM598897 [ ccgCAGTAGGGTTACCAAGTAATAATCTTTATTAGCTTTCTAGACTCCATGACGGTTTTATGTGTTTGCAGAAAGTGAAGTAATAGAAAATGTTATTTTTTAAAGTATTGAAACATCCTTTAGCGCGCGGGATGGTTACGTATTCCGTCTTATGGCCCACAGCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAGAGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGACGATCTATGGATGGGTAAAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATTATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTGACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACATATACAGTAGGTCTTGCctacg ]
[+] EMBL BX628402 [ ACGGCTTTATGTGTTTGCAGAAAGTGAAGTAATAGAAAATGTTATTTTTTAAAGTATTGAAACATCCTTTAGCGCGCGGGATGGTTACATATTCCGTCTTATGGCCCACAGCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAGAGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGACGATCTATGGATGGGTAAAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATTATCGNGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTGACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACATATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCCGAACGGAATCGTGTGCTATTTGTT GCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCTTCTATCAAAAATAACTGTATTTCGAATCAAAACTAACATCTGACGAAATAAA ]
[+] EMBL BM615449 [ ccgCGGTTTTATGTGTTTGCAGAAAGTGAAGTAATAGAAAATGTTATTTTTTAAAGTATTGAAACATCCTTTAGCGCGCGGGATGGGTACGTATTCCGTCTTATGGCCCACAGCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAGAGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGACGATCTATGGATGGGTAAAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATTATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTGACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACATATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCCGAACGGAATCGTGTGCTATTTGTT GCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCTTCTATCAAAAATAACTGTATTTCGAATCAAAACTA ]
[+] EMBL CNS08F33 [ GGTTTTATGTGTTTGCAGAAAGTGAAGTAATAGAAAATGTTATTTTTTAAAGTATTGAAACATCCTTTAGCGCGCGGGATGGTTACGTATTCCGTCTTATGGCCCACAGCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAGAGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGATGATCTATGGATGGGTAAAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATTATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTGACCGAA GAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACATATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCCGAACGGAATCGTGTGCTATTTGTTAACAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCTTCTATCAAAAATAACTGTATTTCGAATCAAAACTAACATCTGACGAAATAAACAAAACTGCAACGTAGCAAACAGAAAAAAAAAAAAAAAAAAGGGCCACATGCCCCCC]
consensusID : consensus_7699#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence
[CCCACAGCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGGTAAGCCAGCACAAATGACATGGATCCGTAGGAATTAACCTGTGATTTTTACAGATGCTTTAGACTTTGTTCAGAGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGACGATCTATGGATGGGTAAAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATTATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTGACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACATATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCCGAACGGAATCGTGTGCTATTTGTTGCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCTTCTATCAAAAATAACTGTATTTCGAATCAAAACTAACATCTGACGAAATAAACAAAACGTATTCCGGGACAGTCCCAATTTCAAAATGGAAATTTAATGTCCAGTCGTAAAAAAAACCCGGGTCCGTGGCAACTCTTCCGTTCCGTAGAACAGTACTCGCCCGG]
[-] EMBL BM619194 [CCCACAGCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGGTAAGCCAGCACAAATGACATGGATCCGTAGGAATTAACCTGTGATTTTTACAGATGCTTTAGACTTTGTTCAGAGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGACGATCTATGGATGGGTAAAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATTATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTGACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACATATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCCGAACGGAATCGTGTGCTATTTGTTGCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCTTCTATCAAAAATAACTGTATTTCGAATCAAAACTAACATCTGACGAAATAAACAAAACGTATTCCGGGACAGTCCCAATTTCAAAATGGAAATTTAATGTCCAGTCGTAAAAAAAACCCGGGTCCGTGGCAACTCTTCCGTTCCGTAGAACAGTACTCGCCCGG]
consensusID : consensus_7699#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence
[CCTCGGGAACTGTTGGCCTACTGGATTAGCTTTCTAAACTCCATGACGGTTTTATGTGTTTGCAGAAAGTGAAGTAATAGAAAATGTTATTTTTTAAAGTATTGAAACATCCTTTAGCGCGCGGGATGGTTACGTATTCCGTCAAATGGCCCACAGCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAGAGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGATGATCTATGGATGGGTAAAGATAACCAGCATCATGTGGCCAAAAATTTATTTACGTACTGCCATGATCAAAGCTATTATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTGACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACATATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCCGAACGGAATCGTGTGCTATTTGTTGCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCTTCTATCAAAAATAACTGTATTTCGAATCAAAACTAACATCTGACGAAATAAAC]
[-] EMBL CNS08F34 [CCTCGGGAACTGTTGGCCTACTGGATTAGCTTTCTAAACTCCATGACGGTTTTATGTGTTTGCAGAAAGTGAAGTAATAGAAAATGTTATTTTTTAAAGTATTGAAACATCCTTTAGCGCGCGGGATGGTTACGTATTCCGTCAAATGGCCCACAGCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAGAGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGATGATCTATGGATGGGTAAAGATAACCAGCATCATGTGGCCAAAAATTTATTTACGTACTGCCATGATCAAAGCTATTATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTGACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACATATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCCGAACGGAATCGTGTGCTATTTGTTGCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCTTCTATCAAAAATAACTGTATTTCGAATCAAAACTAACATCTGACGAAATAAAC]
consensusID : consensus_7699#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence
[CCGCCCACGCGTCCGCGTTTGACAGCACGTGCGATAAAATCGCATGCGATGGAGCACAGACACGGGCCTAAATAACTAAATAATACCTGCAACAGTAGGGTTACCAATATTGAAACATCCTTTAGCGCGCGGGATGGTTACGTATTCCGTCTTATGGCCCACAGCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAGAGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGACGATCTATGGATGGGTAAAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATTATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTGACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACATATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCCGAACGGAATCGTGTGCTATTTGTTGCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCTTCTATCAAAAATAACTGTATTTCGAATCAAAA]
[+] EMBL BM649437 [CCGCCCACGCGTCCGCGTTTGACAGCACGTGCGATAAAATCGCATGCGATGGAGCACAGACACGGGCCTAAATAACTAAATAATACCTGCAACAGTAGGGTTACCAATATTGAAACATCCTTTAGCGCGCGGGATGGTTACGTATTCCGTCTTATGGCCCACAGCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAGAGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGACGATCTATGGATGGGTAAAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATTATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTGACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACATATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCCGAACGGAATCGTGTGCTATTTGTTGCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCTTCTATCAAAAATAACTGTATTTCGAATCAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7699#0 CCGCCCACGCGTCCGTGCAACAGTAGGGTTACCAAGTAATAATCTTTATTAGCTTTCTAG 60
consensus_7699#2 -----------CCTCGGGAACTGTTGGCCTACTGG------------ATTAGCTTTCTAA 37
consensus_7699#3 --------CCGCCCACGCGTCCGC--GTTTGACAG----CACGTGCGATAAAATCGC--- 43
consensus_7699#1 ------------------------------------------------------------
consensus_7699#0 ACTCCATGACGGTTTTATGTGTTTGCAGAAAGTGAAGTAATAG--AAAATGTTATTTTTT 118
consensus_7699#2 ACTCCATGACGGTTTTATGTGTTTGCAGAAAGTGAAGTAATAG--AAAATGTTATTTTTT 95
consensus_7699#3 ATGCGATGGAGCACAGACACGGGCCTAAATAACTAAATAATACCTGCAACAGTAGGGTTA 103
consensus_7699#1 ---------------------------------------------------CCCACAGCC 9
consensus_7699#0 AAAGTATTGAAACATCCTTTAGCGCGCGGGATGGTTACGTATTCCGTCTTATGGCCCACA 178
consensus_7699#2 AAAGTATTGAAACATCCTTTAGCGCGCGGGATGGTTACGTATTCCGTCAAATGGCCCACA 155
consensus_7699#3 CCAATATTGAAACATCCTTTAGCGCGCGGGATGGTTACGTATTCCGTCTTATGGCCCACA 163
consensus_7699#1 AATTTAGTGCAGCAAAGTTTGG-ATGGACGAAGCTATGGTAAGCCAGCACAAATGACATG 68
** ** * ** *** * * ** * * *** ** * * **
consensus_7699#0 GCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAG 238
consensus_7699#2 GCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAG 215
consensus_7699#3 GCCAATTTAGTGCAGCAAAGTTTGGATGGACGAAGCTATGATGCTTTAGACTTTGTTCAG 223
consensus_7699#1 G---ATCCGTAGGAATTAACCTGTGATTTTTACAG-----ATGCTTTAGACTTTGTTCAG 120
* ** * * ** * *** ** ********************
consensus_7699#0 AGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGACGATCTATGGATGGGTA 298
consensus_7699#2 AGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGATGATCTATGGATGGGTA 275
consensus_7699#3 AGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGACGATCTATGGATGGGTA 283
consensus_7699#1 AGTTTGAGGTATGGATTATACGGTACATTTTACGTTGCCCCGACGATCTATGGATGGGTA 180
******************************************* ****************
consensus_7699#0 AAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATT 358
consensus_7699#2 AAGATAACCAGCATCATGTGGCCAAAAATTTATTTACGTACTGCCATGATCAAAGCTATT 335
consensus_7699#3 AAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATT 343
consensus_7699#1 AAGATAACCAGCATCATGTGGCCAAAAATTAATTTACGTACTGCCATGATCAAAGCTATT 240
****************************** *****************************
consensus_7699#0 ATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTG 418
consensus_7699#2 ATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTG 395
consensus_7699#3 ATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTG 403
consensus_7699#1 ATCGAGCAAGCTACATATGGGCCATTTGCTGGCATTAGTTTTTTATATATTATGTCATTG 300
************************************************************
consensus_7699#0 ACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACA 478
consensus_7699#2 ACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACA 455
consensus_7699#3 ACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACA 463
consensus_7699#1 ACCGAAGGAAAGACAGCTGTAGAAGCAGTAAAAGAAGTAAAATTGAAATTCCCCACTACA 360
************************************************************
consensus_7699#0 TATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCC 538
consensus_7699#2 TATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCC 515
consensus_7699#3 TATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCC 523
consensus_7699#1 TATACAGTAGGTCTTGCATTTTGGCCTTTTATTCAAACAATCAATTTTGCTTGTATACCC 420
************************************************************
consensus_7699#0 GAACGGAATCGTGTGCTATTTGTTGCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCT 598
consensus_7699#2 GAACGGAATCGTGTGCTATTTGTTGCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCT 575
consensus_7699#3 GAACGGAATCGTGTGCTATTTGTTGCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCT 583
consensus_7699#1 GAACGGAATCGTGTGCTATTTGTTGCAACCTGCAGTTTCGTATGGACAGTTTTTCTAGCT 480
************************************************************
consensus_7699#0 TCTATCAAAAATAACTGTATTTCGAATCAAAACTAACATCTGACGAAATAAACAAAACTG 658
consensus_7699#2 TCTATCAAAAATAACTGTATTTCGAATCAAAACTAACATCTGACGAAATAAAC------- 628
consensus_7699#3 TCTATCAAAAATAACTGTATTTCGAATCAAAA---------------------------- 615
consensus_7699#1 TCTATCAAAAATAACTGTATTTCGAATCAAAACTAACATCTGACGAAATAAACAAAACGT 540
********************************
consensus_7699#0 CAACGTAGCAAACAGAAAAAAAAAAAAAAAAAAGGGCCACATGCCCCCC----------- 707
consensus_7699#2 ------------------------------------------------------------
consensus_7699#3 ------------------------------------------------------------
consensus_7699#1 ATTCCGGGACAGTCCCAATTTCAAAATGGAAATTTAATGTCCAGTCGTAAAAAAAACCCG 600
consensus_7699#0 --------------------------------------------
consensus_7699#2 --------------------------------------------
consensus_7699#3 --------------------------------------------
consensus_7699#1 GGTCCGTGGCAACTCTTCCGTTCCGTAGAACAGTACTCGCCCGG 644
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||