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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7703#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 915 fasta sequence
[TACATTTTCAATATTAATAATGATCCTTTATTCATTACATTGCTCTTCTTTCCAACATAATTTGCCCGGATGCTGCGCTGCGTCCATCCGCAGGGTACGGCCCCCCTTTTTCTCTGCCAGCAAGCGTGATAGCACGACTGTCTGACGGCCGGCCCGTGCCCAGTATGCTGCTGCCGAATTATGTTAATTATAATAAGTTACTTGTTTTACTGCTTTGCCTGCTTACTAATTTATATGCCTCTCCTCTCTTTTGCTCGATTTGAATGCAACCTAACCGCGTTACGCATCTCATGCGTGTATTAGCTGCTTGCCTGCTGTTACACGAGTTACTTGAAGAAGATGATTTTAGCATTAGGACAAAGCAACATAAAAAGACACTCTTTTTCTGCAACTAGAAAACGGAAATAGAAGCGCTCGCGTAGGGCAAAGGATCGAGATATAAATCAAGATCAAGCTGAATTGCATTCAGCATCAACAACGCAAAGGATAGATTCTCTGCTACACACTTGTTGTTACACCTGTCCCTGTTTATGTCTCTCGTGACGATTGATCGAATGTAAAAATGGTGTTTGTAAAAGCCTTCCAAACGGTGACGTGTATAAATGGTTCAGTTTCATGGGTGAGACAAGCGAGCGAGCGTACCGTTCACAAAACGGGAGACAATTAATGGACTTTCCCGGTGTGCACTCTAGGGT-ATAGATAGCTGGTTCGGCTTTGGTACCAGTGGAAACACACGCAATGAGCAGTGGAGGATAAGGAACGCCTTAGCTCCCCACTACCATACCGTTTTAGTACATTTGTTTTTTTTTTTCGATTCTTTTCCACTGTATATGTGCTTCGTTCACAGCCAGAGAAACGGGTAGAGCCATGTTTGTTTTCGAATGATTCAATACGATAGGAGAAAGGTGTGCCGTT]
[-] EMBL BX618253 [TACATTTTCAATATTAATAATGATCCTTTATTCATTACATTGCTCTTCTTTCCAACATAATTTGCCCGGATGCTGCGCTGCGTCCATCCGCAGGGTACGGCCCCCCTTTTTCTCTGCCAGCAAGCGTGATAGCACGACTGTCTGACGGCCGGCCCGTGCCCAGTATGCTGCTGCCGAATTATGTTAATTATAATAAGTTACTTGTTTTACTGCTTTGCCTGCTTACTAATTTATATGCCTCTCCTCTCTTTTGCTCGATTTGAATGCAACCTAACCGCGTTACGCATCTCATGCGTGTATTAGCTGCTTGCCTGCTGTTACACGAGTTACTTGAAGAAGATGATTTTAGCATTAGGACAAAGCAACATAAAAAGACACTCTTTTTCTGCAACTAGAAAACGGAAATAGAAGCGCTCGCGTAGGGCAAAGGATCGAGATATAAATCAAGATCAAGCTGAATTGCATTCAGCATCAACAACGCAAAGGATAGATTCTCTGCTACACACTTGTTGTTACACCTGTCCCTGTTTATGTCTCTCGTGACGATTG ]
[-] EMBL BX617605 [ AATGATCCTTTATTCATTACATTGCTCTTCTTTCCAACATAATTTGCCCGGATGCTGCGCTGCGTCCATCCGCAGGGTACGGCCCCCCTTTTTCTCTGCCAGCAAGCGTGATAGCACGACTGTCTGACGGCCGGCCCGTGCCCAGTATGCTGCTGCCGAATTATGTTAATTATAATAAGTTACTTGTTTTACTGCTTTGCCTGCTTACTAATTTATATGCCTCTCCTCTCTTTTGCTCGATTTGAATGCAACCTAACCGCGTTACGCATCTCATGCGTGTATTAGCTGCTTGCCTGCTGTTACACGAGTTACTTGAAGAAGATGGTTTTAGCATTAGGACAAAGCAACATAAAAAGACACTCTTTTTCTGCAACTAGAAAACGGAAATAGAAGAGCTCGCGTAGGGCAAAGGATCGAGATATAAATCAAGATCAAGCTGAATTGCATTCAGCATCAACAACGCAAAGGATAGATTCTCTGCTACACACTTGTTGTTACACCTGTCCCTGTTTATGTCTCTC ]
[+] EMBL AGA282527 [ GCGCTGCGTCCATCCGCAGGGTACGGCCCCCCTTTTTCTCTGCCAGCAAGCGTGATAGCACGACTGTCTGACGGCCGGCCCGTGCCCAGTATGCTGCTGCCGAATTATGTTAATTATAATAAGTTACTTGTTTTACTGCTTTGCCTGCTTACTAATTTATATGCCTCTCCTCTCTTTTGCTCGATTTGAATGCAACCTAACCGCGTTACGCATCTCATGCGTGTATTAGCTGCTTGCCTGCTGTTACACGAGTTACTTGAAGAAGATGATTTTAGCATTAGGACAAAGCAACATAAAAAGACACTCTTTTTCTGCAACTAGAAAACGGAAATAGAAGCGCTCGCGTAGGGCAAAGGATCGAGATATAAATCAAGATCAAGCTGAATTGCATTCAGCATCAACAACGCAAAGGATAGATTCTCTGCTACACACTTGTTGTTACACCTGTCCCTGTTTATGT ]
[-] EMBL BX617375 [ AATAAGTTACTTGTTTTACTGCTTTGCCTGCTTACTAATTTATATGCCTCTCCTCTCTTTTGCTCGATTTGAATGCAACCTAACCGCGTTACGCATCTCATGCGTGTATTAGCTGCTTGCCTGCTGTTACACGAGTTACTTGAAGAAGATTATTTTAGCATTAGGACAAAGCAACATAAAAAGACACTCTTTTTCTGCAACTAGAAAACGGAAATAGAAGCGCTCGCGTAGGGCAAAGGATCGAGATATAAATCAAGATCAAGCTGAATTGCATTCAGCATCAACAACGCAAAGGATAGATTCTCTGCTACACACTTGTTGTTACACCTGTCCCTGTTTATGTCTCTCGTGACGATTGATCGAATGTAAAAATGGTGTTTGTAAAAGCCTTCCAAACGGTGACGTGTATAAATGGTTCAGTTTCATGGGTGAGACAAGCGAGCGAGCGTACCGTTCACAAAACGGGAGACAATTAATGGACTTTCCCGGTGTGCACTCTAGGGT ATAGATAGCTGGTTCGGCTTTGGTACCAGTGGAAACACACGCAATGAG ]
[-] EMBL BX611175 [ TTTAGCATAAGGACAAAGCAACACAAAAAGACACTCTTTTTCTGCAACTAAAAGGCTGAAACAGAAGCGCTCGCGTAGGGCAAACGATCGAGATATAAATCAAGATCGAGCTGAATTGCATTCAGCATCAACAACGCAAAGGATAGATTCTCTGCTA ACACTTGTTGTTACACCTGTTCCTGTTTATGTCTCTCGTGACGATTGATCGAATGTAAAAATGGTGTTTGTAAAAGCCTTCCAAACGGTGACGTGTATAAATGGTTCAGTTTCATGGGTGAGACAAGCGAGCGAGCGTACCGTTCACAAAACGGGAGACAATTAATGGACTTT CCGGTGTGCACACTAGGGTAATAGATAGCTGGTTCGGCTTTGGTACCAGTGGAAACACACGCAATGAGCAGTGGAGGATAAGGAACGCCTTAGCTCCCCACTACCATACCGTTTTAGTACATTTGTTTTTTTTTTTCGATTCTTTTCCACTGTATATGTGCTTCGTTCACAGCCAGAGAAACGGGTAGAGCCATGTTTGTTTTCGAATGATTCAATACGATAGGAGAAAGGTGTGCCGTT]
consensusID : consensus_7703#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 720 fasta sequence
[CCCGNGGTTAAATCAATCAGGATAGTATGCCGTTGGGGGTAATATAGTTGCCGGATGGAGCTGTTTAATATGCATATTACCGTTTGGATTTGGCAGAAATGAGTCATNTTCTGCGCTATTTGTCGGACGCAAATGCAGTCTNTACTATNTATCTATGTATATATATTTGCTATCAATTTACTAGACACCCATGCAACCGTATGTACACTCGGATAANGTAGTTGGCGAACCGGTACACCCTNTATCTACCTAATCGGTTATTTGAANATTGAAAGCATTACGGAAACACAATNNTTGGAAAACCCCAATTATGGANCAAAACAAACTTTCCGGAGACAACCAAAAAACGCATTGGGGCCTTCCTTANTTCCCGGCATACTACCTTCCTNGGGAGCCTCGGTTGGACAACATCGGACAGAGCACCAATTAATTAACCAAAGGGNGGGGGAACACNAAANGACAAATTCCAGGGACAAAAGAACAGACCACACACATTGGTTAACCTTTCGANAACAGAACTTAGGNACCATTTGACGGCCAAGGGATAAGGGAGCGAAANGCCTNCATTAGGGGCCTTATAAAGACGCCTTTATGAAATTAANCGCCTTCCCCCAACCTNGGGTTACCCCATTATACGGCGCACGTTCGTTAGGTTACATACCACCAACCATAAGGGGGTACAACTCGCAAAAAAGGGCCCCCAGACAAACATCAAACGAC]
[+] EMBL AL695681 [CCCGNGGTTAAATCAATCAGGATAGTATGCCGTTGGGGGTAATATAGTTGCCGGATGGAGCTGTTTAATATGCATATTACCGTTTGGATTTGGCAGAAATGAGTCATNTTCTGCGCTATTTGTCGGACGCAAATGCAGTCTNTACTATNTATCTATGTATATATATTTGCTATCAATTTACTAGACACCCATGCAACCGTATGTACACTCGGATAANGTAGTTGGCGAACCGGTACACCCTNTATCTACCTAATCGGTTATTTGAANATTGAAAGCATTACGGAAACACAATNNTTGGAAAACCCCAATTATGGANCAAAACAAACTTTCCGGAGACAACCAAAAAACGCATTGGGGCCTTCCTTANTTCCCGGCATACTACCTTCCTNGGGAGCCTCGGTTGGACAACATCGGACAGAGCACCAATTAATTAACCAAAGGGNGGGGGAACACNAAANGACAAATTCCAGGGACAAAAGAACAGACCACACACATTGGTTAACCTTTCGANAACAGAACTTAGGNACCATTTGACGGCCAAGGGATAAGGGAGCGAAANGCCTNCATTAGGGGCCTTATAAAGACGCCTTTATGAAATTAANCGCCTTCCCCCAACCTNGGGTTACCCCATTATACGGCGCACGTTCGTTAGGTTACATACCACCAACCATAAGGGGGTACAACTCGCAAAAAAGGGCCCCCAGACAAACATCAAACGAC]
consensusID : consensus_7703#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 550 fasta sequence
[GGTTCGGCATTTGGTACCAGTGGAAACACACGCAATGACAGTGGAGGATAAGGAAAGCCATAGCTCCCCACTGCCATACAGTTTTAGGCATTTTGTTTTTCCAGATTCATTGTTCCACTGTATATGTGCTTCGTTCACAGCCAGAGAAACGGATAGAGCCATGTTTGTTTTCGAANTTNTGTTCAATGGTTCAAATGGTTCGAATGGTTTCATTTCAATACGATAGGAGAAAGGTGTACCGTTCGCCACTACAAATCGAGGTACAACGGTGCATGGGTGCTAGTAAATTGAAGCAAAAATAACATAGAAAAGAAAGACTGCATTTGCGTCCGACAAAATAGCGCAGAAATGACTCATTTCTGCCAAATCCAAACGGTAATATGCATATTAAACAGCTCCATCCGGCAACTCTATTACCCCCAACGGCATACTATCCTGA-TTGATTTCNT-GGGTTTATGAGCTTAAANAACCTCGATTCGCCTTACTCCAATACCATAAACAACTCAAGACAGTTGCTCATCTTCTCTTCAACAGTAGCTTTCAAACAAAA]
[-] EMBL AL929943 [GGTTCGGCATTTGGTACCAGTGGAAACACACGCAATGACAGTGGAGGATAAGGAAAGCCATAGCTCCCCACTGCCATACAGTTTTAGGCATTTTGTTTTTCCAGATTCATTGTTCCACTGTATATGTGCTTCGTTCACAGCCAGAGAAACGGATAGAGCCATGTTTGTTTTCGAANTTNTGTTCAATGGTTCAAATGGTTCGAATGGTTTCATTTCAATACGATAGGAGAAAGGTGTACCGTTCGCCACTACAAATCGAGGTACAACGGTGCATGGGTGCTAGTAAATTGAAGCAAAAATAACATAGAAAAGAAAGACTGCATTTGCGTCCGACAAAATAGCGCAGAAATGACTCATTTCTGCCAAATCCAAACGGTAATATGCATATTAAACAGCTCCATCCGGCAACTCTATTACCCCCAACGGCATACTATCCTGA TTGATTTCNT GGGTTTATGAGCTTAAANAACCTCG ]
[-] EMBL AGA280899 [ GTGCTTCGTTCACAGCCAGAGAAACGGATAGAGCCATGTTTGTTTTCGAA TT TTTTCAATGGTTCAAATGGTTCGAATGGTTTCATTTCAATACGATAGGAGAAAGGTGTACCGTTCGCCACTACAAATCGAGGTACAACGGTGCATGGGTGCTAGTAAATTGAAGCAAAAATAACATAGAAAAGAAAGACTGCATTTGCGTCCGACAAAATAGCGCAGAAATGACTCATTTCTGCCAAATCCAAACGGTAATATGCATATTAAACAGCTCCATCCGGCAACTCTATTACCCCCAACGGCATACTATCCTGATTTGATTTCCTGGGGTTTATGAGCTTTAAAAGTGAATATTCGCCTTACTCCAATACCATAAACAACTCAAGACAGTTGCTCATCTTCTCTTCAACAGTAGCTTTCAAACAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7703#0 TACATTTTCAATATTAATAATGATCCTTTATTCATTACATTGCTCTTCTTTCCAACATAA 60
consensus_7703#2 ------------------------------------------------------------
consensus_7703#1 ------------------------------------------------------------
consensus_7703#0 TTTGCCCGGATGCTGCGCTGCGTCCATCCGCAGGGTACGGCCCCCCTTTTTCTCTGCCAG 120
consensus_7703#2 ------------------------------------------------------------
consensus_7703#1 ------------------------------------------------------------
consensus_7703#0 CAAGCGTGATAGCACGACTGTCTGACGGCCGGCCCGTGCCCAGTATGCTGCTGCCGAATT 180
consensus_7703#2 -------GGTTCGGCATTTGG-TACCAGTGGAAACACACGCA--ATGACAGTGGAGGATA 50
consensus_7703#1 ----------CCCGNGGTTAAATCA-ATCAGGATAGTATGCCG-TTGGGGGTAATATAGT 48
* * * * ** * *
consensus_7703#0 ATGTTAATTATAATAAGTTACTTGTTTTACTGCTTT-GCCTGCTTACTAATTTATATGCC 239
consensus_7703#2 AGGAAAGCCATAGCTCCCCACT-GCCATACAGTTTTAGGCATTTTGTTTTTCCAGATTCA 109
consensus_7703#1 -TGCCGGATGGAGCTGTTTAATATGCATATTACCGTTTGGATTTGGCAGAAATGAGTCAT 107
* * * * ** * * *
consensus_7703#0 TCTCCTCTCTTT-TGCTCGATTTGAATGCAACCTAACCGCGTTACGCATCTCATGCGTGT 298
consensus_7703#2 TTGTTCCACTGTATATGTGCTTCGTTCACAGCCAGA----GAAACGGAT---AGAGCCAT 162
consensus_7703#1 NTTCTGCGCTATTTGTCGGACGCAAATGCAGTCTNTACTATNTATCTAT---GTATATAT 164
* ** * * * ** * * ** *
consensus_7703#0 ATTAGCTGCTTGCCTGCTGTTACACGAGTTACTTGAAGAAGATGATTTTAGCATTAGGAC 358
consensus_7703#2 GTTTGTTTTCGAANTTNTGTTCAATGGTTCAAATGGTTCGAATGGTTT---CATTTCAAT 219
consensus_7703#1 ATTTGCTATCAATTTACTAGACACCCATGCAACCGTAT-GTACACTCG----GATAANGT 219
** * * * * * * * * *
consensus_7703#0 AAAGCAACATAAAAAGACACTCTTTTTCTGC---AACTAGAAAACGGAAATAGAAGCGCT 415
consensus_7703#2 ACGATAGGAGAAAGGTGTACCGTTC----GC---CACTACAAATCG-AGGTACAACGGTG 271
consensus_7703#1 A-GTTGGCGAACCGGTACACCCTNTATCTACCTAATCGGTTATTTGAANATTGAAAGCAT 278
* * ** * * * * * * * **
consensus_7703#0 CGCGTAGGGCAAAGGATCG--AGATATAAAT--CAAGATCAAGCTGAATTGCATTCAGCA 471
consensus_7703#2 CATGGGTGCTAGTAAATTG--AAGCAAAAATAACATAGAAAAGAAAGACTGCATTTGCGT 329
consensus_7703#1 TACGGAAACACAATNNTTGGAAAACCCCAATTATGGANCAAAACAAACTT---TCCGGAG 335
* * * * *** ** * *
consensus_7703#0 TCAACAACGCAAAGGATAGATTCTCTGCTACACACTTGTTGTTACAC--CTGTCCCTGTT 529
consensus_7703#2 CCGACAAAATAGCGCAGAAAT-------GACTCATTT-CTGCCAAAT--CCAAACGGTAA 379
consensus_7703#1 ACAACCAAAAAACGCATTGGGGCCT---TCCTTANTTCCCGGCATACTACCTTCCTNGGG 392
* ** * * * * * * ** * * * * *
consensus_7703#0 TATGTCTCTCGTGACGATTGATCGAATGTAAAAATGGTGTTTGTAAAAGCCTTCCAAACG 589
consensus_7703#2 TATGCATATTAAACAGCTCCATCCG--GCAACTCTATTACCCCCAACGGCATACTATCCT 437
consensus_7703#1 AGCCTCGGTTGGACAACATCGGACAGAGCACCAATTAATTAACCAAAGGGNGGGGGAAC- 451
* * * * ** * *
consensus_7703#0 GTGACGTGTATAAATGGTTCAGTTTCATGGGTGAGACAAGCGAGCGAGCGTACCGTTCAC 649
consensus_7703#2 G--------ATTGATTTCNTGGGTTTATGAGCTTAAANAACCTCGATTCGCCTTACTC-C 488
consensus_7703#1 ---------ACNAAANGACAAATTCCAGGGACAAAAGAACAGACCACACACATTGGTT-- 500
* * * * * * * * *
consensus_7703#0 AAAACGGGAGACAATTAATGGACTTTCCCGGTGTGCACTCTAGGGTATAGATAGCTGGTT 709
consensus_7703#2 AATACCATAAACAACTCAAGACAGTTGCTCATCTTCTCTTCAACA-GTAGCTTTCAAACA 547
consensus_7703#1 -AACCTTTCGANAACAGAACTTAGGNACC-ATTTGACGGCCAAGGGATAAGGGAGCGAAA 558
* * * ** * * * * * **
consensus_7703#0 CGGCTTTGGTACCAGTGGAAACACACGCAATGAGCAGTGGAGGATAAGGAACGCCTTAGC 769
consensus_7703#2 AAA--------------------------------------------------------- 550
consensus_7703#1 NGCCTNCATTA-----GGGGCCTTATAAAGACGCCTTTATGAAATTAANCGCCTTCCCCC 613
consensus_7703#0 TCCCCACTACCATACCGTTTTAGTACATTTGTTTTTTTTTTTCGATTCTTTTCCACTGTA 829
consensus_7703#2 ------------------------------------------------------------
consensus_7703#1 AACCTNGGGTTACCCCATTATACGGCGCACGTTCGTTAGGTTACATACCAC-CAACCATA 672
consensus_7703#0 TATGTGCTTCGTTCACAGCCAGAGAAACGGGTAGAGCCATGTTTGTTTTCGAATGATTCA 889
consensus_7703#2 ------------------------------------------------------------
consensus_7703#1 AGGGGGTACAACTCGCAAAAAAGGGCCCCCAGACAAACATCAAACGAC------------ 720
consensus_7703#0 ATACGATAGGAGAAAGGTGTGCCGTT 915
consensus_7703#2 --------------------------
consensus_7703#1 --------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||