These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7709#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1086 fasta sequence [GCCTCCGAACGGTTAAGGCCTCGACCGCGTGCTCCGCCGGGTTTTTCTTACAGTTGCTAGCGTCACCAGACCAGATCCATCGAAAATGACCAAGAAGGCTGATCCCTATGGCTTCGCCAAGGATTTCCTGGCCGGTGGTATCTCTGCCGCTGTCTCGAAAACGGCCGTAGCACCGATCGAACGCGTCAAGCTGCTGCTCCAGGTCCAGGCTGCCTCCAAGCAGATCGCCGTCGACAAGCAGTACAAGGGAATCGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCG-ACCCAGGCCCTGAACTTCGCGTTCAAGGATGTGTACAAACAGGTGTTCCTCGGCGACGTCGACAAGAACACCCAGTTCTGGCGCTACTTCCTGGGT-AACCTCGG-ATCCGGCGGTGCCGCCGGTGCCACGTCGCTCTGCTTCGTGTACCCGCTCGACTTCGCCCGTACCCGTCTCGGTGCGGACGTTGGTCGCGGTGCCGGCGAGCGTGAGTTCAACGGTCTGCTCGACTGTCTGAAGAAGACGGTCAAGTCGGACGGTATCATCGGTCTGTACCGTGGATTCAACGTGTCCGTTCAGGGTATCATCATCTATCGTGCGGCCTACTTCGGTTGCTTCGATACTGCCAAGGGAATGCTGCCGGACCCGAAGAACACCTCCATCTTCGTCTCGTGGGCCATCGCACAGGTGGTGACGACGGCTTCCGGTATTATTTCGTATCCTTTCGATACCGTCAGACGACGCATGATGATGCAGTCTGGCCGTGCCAAGTCGGAGGTGATGTACAAGAACACGCTCGACTGCTGGGTCAAGATCGGCAAGCAGGAAGGTTCCGGCGCGTTCTTCAAGGGCGCTTTCTCGAACGTCCTGCGTGGTACTGGTGGCGCTCTGGTGCTCGTATTCTACGACGAATTTAAGGCCCTGCTGGGTTAAGACGGGGAACAGCACGCACCTTAGTGTAATTAGTTATGTCCAGCCAGCCAGAACAGCAGCAGCAGCAGCAGTAACAT---CAACAACAACAACCATTATAACATCCAAATCAACACACACTTACCGGTAGCGATCGG] [+] EMBL CNS09H2D [GCCTCCGAACGGTTAAGGCCTCGACCGCGTGCTCCGCCGGGTTTTTCTTACAGTTGCTAGCGTCACCAGACCAGATCCATCGAAAATGACCAAGAAGGCTGATCCCTATGGCTTCG CAAGGATTTCCTGGCCGGTGGTATCTCTGCCGCTGTCTCGAAAACGGCCGTAGCACCGATCGAACGCGTCAAGCTGCTGCTCCAGGTCCAGGCTGCCTCCAAGCAGATCGCCGTCGACAAGCAGTACAAGGGAATCGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCG ACCCAGGCCCTGAACTTCGCGTTCAAGGATGTGTACAAACAGGTGTTCCTCGGCGGCGTCGACAAGAACACCCAGTTCTGGCGCTACTTCCTGGGT AACCTCGG ATCCGGCGGTGCCGCCGGTGCCACGTCGCTCTGCTTCGTGTACCCGCTCGACTTCGCCCGTACCCGTCTCGGTGCGGACGTTGGTCGCGGTGCCGGCGAGCGTGAGTTCAACGGTCTGCTCGACTGTCTGAAGAAGACGGTCAAGTCGGACGGTATCATCGGTCTGTACCGTGGATTCAACGTGTCCGTTCAGGGTATCATCATCTATCGTGCGGCCTACTTCGGTTGCTTCGATACTGCCAAGGGAATGCTGCCGGACCCGAAGAACACCTCCATCTTCGTCTCGTGGGCCATCGCACAGGTGGTGACGACGGCTTCCGGTATTATTTCGTATCCTTTCGATACCGTCAGACGACGCATGATGATGCAGTCTGGCCGTGCCAAGTCGGAGGTGATGTACAAGAACACGCTCGACTGCTGGGTCAAGATCGGCAAGCAGGAAGGTTCCGGCGCGTTCTTCAAGGTTGCTTTCTCGAACGTCCTGCGTGGTACTGGTGGCGCTCTGGTGCTCGTATTCTACGACGAATTTAAGGCCCTGCTGGGTTAAGACGGGGAACAGCACGCACCTTAGTGTAATTAGTTATGTCCAGCCAGCCAG ] [+] EMBL CNS09N65 [ TCCGAACGGTTAAGGCCTCGACCGCGTGCTCCGCCGGGTTTTTCTTACAGTTGCTAGCGTCACCAGACCAGATCCATCGAAAATGACCAAGAAGGCTGATCCCTATGGCTTCGCCAAGGATTTCCTGGCCGGTGGTATCTCTGCCGCTGTCTCGAAAACGGCCGTAGCACCGATCGAACGCGTCAAGCTGCTGCTCCAGGTCCAGGCTGCCTCCAAGCAGATCGCCGTCGACAAGCAGTACAAGGGAATCGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCG ACCCAGGCCCTGAACTTCGCGTTCAAGGATGTGTACAAACAGGTGTTCCTCGGCGACGTCGACAAGAACACCCAGTTCTGGCGCTACTTCCTGGGT AACCTCGG ATCCGGCGGTGCCGCCGGTGCCACGTCGCTCTGCTTCGTGTACCCGCTCGACTTCGCCCGTACCCGTCTCGGTGCGGACGTTGGTCGCGGTGCCGGCGAGCGTGAGTACAACGGTCTGCTCGACTGTCTGAAGAAGACGGTCAAGTCGGACGGTATCATCGGTCTGTACCGTGGATTCAACGTGTCCGTTCAGGGTATCATCATCTATCGTGCGGCCTACTTCGGTTGCTTCGATACTGCCAAGGGAATGCTGCCGGACCCGAAGAACACCTCCATCTTCGTCTCGTGGGCCATCGCACAGGTGGTGACGACGGCTTCCGGTATTATTTCGTATCCTTTCGATACCGTCAGACGACGCATGATGATGCAGTCTGGCCGTG CAAGTCGGAGGTGATGTACAAGAACACGCTCGACTGCTGGGTCAAGATCGGCAAGCAGGAAGGTTCCGGCGCGTTCTTCAAGGGCGCTTTCTCGAACGTCCTGCGTGGTA ] [+] EMBL CNS09N5B [ GAACGGTTAAGGCCTCGACCGCGTGCTCCGCCGGGTTTTTCTTACAGTTGCTAGCGTCACCAGACCAGATCCATCGAAAATGACCAAGAAGGCTGATCCCTATGGCTTCGCCAAGGATTTCCTGGCCGGTGGTATCTCTGCCGCTGTCTCGAAAACGGCCGTAGCACCGATCGAACGCGTCAAGCTGCTGCTCCAGGTCCAGGCTGCCTCCAAGCAGATCGCCGTCGACAAGCAGTACAAGGGAATCGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCG ACCCAGGCCCTGAACTTCGCGTTCAAGGATGTGTACAAACAGGTGTTCCTCGGCGACGTCGACAAGAACACCCAGTTCTGGCGCTACTTCCTGGGT AACCTCGG ATCCGGCGGTGCCGCCGGTGCCACGTCGCTCTGCTTCGTGTACCCGCTCGACTTCGCCCGTACCCGTCTCGGTACGGACGTTGGTCGCGGTGCCGGCGAGCGTGAGTTCAACGGTCTGCTCGACTGTCTGAAGAAGACGGTCAAGTCGGACGGTATCATCGGTCTGTACCGTGGATTCAACGTGTCCGTTCAGGGTATCATCATCTATCGTGCGGCCTACTTCGGTTGCTTCGATACTGCCAAGGGAATGCTGCCGGACCCGAAGAACACCTCCATCTTCGTCTCGTGGGCCATCGCACAGGTGGTGACGACGGCTTCCGGTATTATTTCGTATCCTTTCGATACCGTCAGACGACGCATGATGATGCAGTCTGGCCGTGCCAAGTCGGAGGTGATGTACAAGAACACGCTCGTTTTTTGGGTCAAGATCGGCAAGCAGGAAGGTTCCGGCGCGTTCTTCAAGGGCGCTTTCTCGAACGTCCTGCGTGGTACTGGTGGCGCTCTGGTGCTCGTATTCTACGACGAATTAAAGGCCCTGCTGGGTTAAG ] [-] EMBL CNS09H2E [ GGTCCAGGCTGCCTCCAAGCAGATCGCCGTCGACAAGCAGTACAAGGGAATCGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCGAAAAAAGGCCCTGAACTTCGCGTTCAAGGATGTGTACAAACAGGTGTTCCTCGGCGGCGTCGACAAGAACACCCAGTTCTGGCGCTACTTCCTGGGT AACCTCGGAATCC GCGGTGCCGCCGGTGCCACGTCGCTCTGCTTCGTGTACCCGCTCGACTTCGCCCGTACCCGTCTCGGTGCGGACGTTGGTCGCGGTGCCGGCGAGCGTGAGTTCAACGGTCTGCTCGACTGTCTGAAGAAGACGGTCAAGTCGGACGGTATCATCGGTCTGTACCGTGGATTCAACGTGTCCGTTCAGGGTATCATCATCTATCGTGCGGCCTACTTCGGTTGCTTCGAAACTGCCAAGGGAATGCTGCCGGACCCGAAGAACACCTCCATCTTCGTCTCGTGGGCCATCGCACAGGTGGTGACGACGGCTTCCGGTATTATTTCGTATCCTTTCGATACCGTCAGACGACGCATGATGATGCAGTCTGGCCGTGCCAAGTCGGAGGTGATGTACAAGAACACGCTCGACTGCTGGGTCAAGATCGGCAAGCAGGAAGGTTCCGGCGCGTTCTTCAAGGGCGCTTTCTCGAACGTCCTGCGTGGTACTGGTGGCGCTCTGGTGCTCGTATTCTACGACGAAGTTAAGGCCCTGCTGGGTTAAGACGGGGAACAGCACGCACCTTAGTGTAATTAGTTATGTCCAGCCAGCCAGAACAGCAGCAGCAGCAGCAGTAACAT CAACAACAACAACCATTATAACATCCAAATCAACACACACTTACCGGTAGCGATCGG] [-] EMBL CNS09N5C [ AAGCAGATCGCCGTCGACAAGCAGTACAAGGGAATCGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCG ACCCAGGCCCTGACCTTCGCGTTCAAGGATGTGTACAAACAGGTGTTCCTCGAAAAAAACAACAAGAACACCCAGTTCTGGCGCTACTTCCTGGGT AACCTCGG ATTCCGCGGTGCCGCCGGTGCCACGTCGCTCTGCTTCGTGTACCCGCTCGACTTCGCCCGTACCCGTCTCGGTGCGGACGTTGGTCGCGGTGCCGGCGAGCGTGAGTTCAACGGTCTGCTCGACTGTCTGAAGAAGACGGTCAAGTCGGACGGTATCATCGGTCTGTACCGTGGATTCAACGTGTCCGTTCAGGGTATCATCATCTATCGTGCGGCCTACTTCGGTTGCTTCGAAACTGCCAAGGGAATGCTGCCGGACCCGAAGAACACCTCCATCTTCGTCTCGTGGGCCATCGCACAGGTGGTGACGACGGCTTCCGGTATTATTTCGTATCCTTTCGATACCGTCAGACGACGCATGATGATGCAGTCTGGCCGTGCCAAGTCGGAGGTGATGTACAAGAACACGCTCGACTGCTGGGTCAAGATCGGCAAGCAGGAAGGTTCCGGCGCGTTCTTCAAGGGCGCTTTCTCGAACGTCCTGCGTGGTACTGGTGGCGCTCTGGTGCTCGTATTCTACGACGAAGTTAAGGCCCTGCTGGGTTAAGACGGGGAACAGCACGCACCTTAGTGTAATTAGTTATGTCCAGCCAGCCAGAACAGCAGCAGCAGCAGCAGTAACATCAACAACAACAACAACCATTATAACATCCAAATCAACACACACTTACCGGTAGCGATCGG] [-] EMBL CNS08N3F [ ttTTCCTGGGTAAAAAAAAA ATCC GCGGTGCCGCCGGTGCCACGTCGTTCTGCTTCGTGTACCCGCTCGACTTCGCCCGTACCCGTCTCGGTGCGGACGTTGGTCGCGGTGCCGGCGAGCGTGAGTTCAACGGTCTGCTCGACTGTTTGAAGAAGACGGTCAAGTCGGACGGTATCATCGGTCTGTACCGTGGATTCAACGTGTCCGTTCAGGGTATCATCATCTATCGTGCGGCCTACTTCGGTTGCTTCGATACTGCCAAGGGAATGCTGCCGGACCCGAAGAAAACCTCCATCTTCGTCTCGTGGGCCATCGCACAGGTGGTGACGACGGCTTCCGGTATTATTTCGTATCCTTTCGATACCGTCAGACAACGCATGATGATGCAGTCTGGCCGTGCCAAGTCGGAGGTGATGTACAAG ] consensusID : consensus_7709#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 384 fasta sequence [CCCCGCGCTACGACATGGATCGGTCCGGCGTCGGGTCCCGGGCGTCACCGCGCCAGGCGGACGTCATCATCGGGGCCGGCACGCTGACGAACAAGAAGGCACCGGCCCTGCGCAAGGGGTACGACCAGATGCCGGAACCGCGCTGGGTCACCACGACGGGTAGCGGCGCGAACGGGGGCGGCTACAACCACTACACCCACACGGTGGTGCGCGGCTGCGACCGGATCACCCCGGTCGACATCAACGTGCCCGGCGGCCCGCCCACCGCCGAGGCGCTGCGGGACGGCGGGCTGCAGAGGCAGAAGAAGGGCAAGCGCATGAAGACGCTGCAGAAGTGGTACCGCAAATAGATAGTGTGCCTCCATCCCGTTTCGTCCTGGCCCC] [+] EMBL BX613205 [CCCCGCGCTACGACATGGATCGGTCCGGCGTCGGGTCCCGGGCGTCACCGCGCCAGGCGGACGTCATCATCGGGGCCGGCACGCTGACGAACAAGAAGGCACCGGCCCTGCGCAAGGGGTACGACCAGATGCCGGAACCGCGCTGGGTCACCACGACGGGTAGCGGCGCGAACGGGGGCGGCTACAACCACTACACCCACACGGTGGTGCGCGGCTGCGACCGGATCACCCCGGTCGACATCAACGTGCCCGGCGGCCCGCCCACCGCCGAGGCGCTGCGGGACGGCGGGCTGCAGAGGCAGAAGAAGGGCAAGCGCATGAAGACGCTGCAGAAGTGGTACCGCAAATAGATAGTGTGCCTCCA ] [+] EMBL BX612336 [ ACCGCGCCAGGCGGACGTCATCATCGTGGCCGGCACGCTGACGAACAAGAAGGCACCGGCCCTGCGCAAGGGGTACGACCAGATGCCGGAACCGCGCTGGGTCACCACGAAGGGTAGCTGCGCGAACGGGGGCGGCTACTACCACTACACCTACCCGGTGGTGCGCGGCTGCGACCGGATCACCCCGGTCGACATCAACGCGCCCGGCGGCCCGCCCACCGCCGAGGCGCTGCTGGACGGCGGGCTGCAGTTGCAGAAGAAGGGCAAGCGCATGAATACGCTGCAGAAGTGGTACCGCAAATAGATAGGGTGCCTCCCTCCCGTTTCGTCCTGGCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7709#0 GCCTCCGAACGGTTAAGGCCTCGACCGCGTGCTCCGCCGGGTTTTTCTTACAGTTGCTAG 60 consensus_7709#1 ------------------------------------------------------------ consensus_7709#0 CGTCACCAGACCAGATCCATCGAAAATGACCAAGAAGGCTGATCCCTATGGCTTCGCCAA 120 consensus_7709#1 ------------------------------------------------------------ consensus_7709#0 GGATTTCCTGGCCGGTGGTATCTCTGCCGCTGTCTCGAAAACGGCCGTAGCACCGATCGA 180 consensus_7709#1 ------------------------------------------------------------ consensus_7709#0 ACGCGTCAAGCTGCTGCTCCAGGTCCAGGCTGCCTCCAAGCAGATCGCCGTCGACAAGCA 240 consensus_7709#1 ------------------------------------------------------------ consensus_7709#0 GTACAAGGGAATCGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCC 300 consensus_7709#1 ------------------------------------------------------------ consensus_7709#0 GACCCAGGCCCTGAACTTCGCGTTCAAGGATGTGTACAAACAGGTGTTCCTCGGCGACGT 360 consensus_7709#1 -------------------------------------------------CCCCGCG-CTA 10 * * *** * consensus_7709#0 CGACAAGAACACCCAGTTCTGGCGCTACTTCCTGGGTAACCTCGGATCCGGCGGTGCCGC 420 consensus_7709#1 CGACATGGA----TCGGTCCGGCGTCGGGTCCCGGGCGTCACCGCGCCAGGCGG------ 60 ***** * * * ** **** *** *** * ** * ***** consensus_7709#0 CGGTGCCACGTCGCTCTGCTTCGTGTACCCGCTCGACTTCGCCCGTACCCGTCTCGGTGC 480 consensus_7709#1 ----ACGTCATCA-TCGGGGCCG-GCACGCTGACGAACAAGAAGGCACCGGCCCTGCGCA 114 * * ** ** * ** * ** * *** * * *** * * * consensus_7709#0 GGACGTTGGTCGCGGTGCCGGCGA-GCGTGAGTTCAACGGTCTGCTCGACTGTCTGAA-G 538 consensus_7709#1 AGGGGTACGACCAGATGCCGGAACCGCGCTGGGTCACCACGACGGGTAGCGGCGCGAACG 174 * ** * * * ****** *** * *** * * * * *** * consensus_7709#0 AAGACGGTCAAGTCGGACGGTATCATCGGTCTGTACCGTGGATTCAACGTGTCCGTTCAG 598 consensus_7709#1 GGGGCGGCTACAACC-ACTACACCCACACGGTGGTGCGCGGCTGCGACCGGATCACCCCG 233 * *** * * ** * * * ** ** ** * * ** * * * * consensus_7709#0 GGTATCATCATC-TATCGTGCGGCCTACTTCGGTTGCTTCGATACTGCCAAG-GGAATGC 656 consensus_7709#1 GTCGACATCAACGTGCCCGGCGGCCCGCCC--ACCGCCGAGGCGCTGCGGGACGGCGGGC 291 * ***** * * * ****** * ** * **** ** ** consensus_7709#0 TGCCGGACCCGAAGAACACCTCCATCTTCGTCTCGTGGGCCATCGCACAGGTGGTGACGA 716 consensus_7709#1 TGCAGAGGCAGAAGAAGGG---CAAGCGCATG----AAGACGCTGCAGAAGTGGTACCGC 344 *** * * ****** ** * * * * *** * ***** ** consensus_7709#0 CGGCTTCCGGTATTATTTCGTATCCTTTCGATACCGTCAGACGACGCATGATGATGCAGT 776 consensus_7709#1 AAATAGATAGTGTGCCTCCATCCCGTTTCGTCCTGGCCCC-------------------- 384 ** * * * * * ***** * * consensus_7709#0 CTGGCCGTGCCAAGTCGGAGGTGATGTACAAGAACACGCTCGACTGCTGGGTCAAGATCG 836 consensus_7709#1 ------------------------------------------------------------ consensus_7709#0 GCAAGCAGGAAGGTTCCGGCGCGTTCTTCAAGGGCGCTTTCTCGAACGTCCTGCGTGGTA 896 consensus_7709#1 ------------------------------------------------------------ consensus_7709#0 CTGGTGGCGCTCTGGTGCTCGTATTCTACGACGAATTTAAGGCCCTGCTGGGTTAAGACG 956 consensus_7709#1 ------------------------------------------------------------ consensus_7709#0 GGGAACAGCACGCACCTTAGTGTAATTAGTTATGTCCAGCCAGCCAGAACAGCAGCAGCA 1016 consensus_7709#1 ------------------------------------------------------------ consensus_7709#0 GCAGCAGTAACATCAACAACAACAACCATTATAACATCCAAATCAACACACACTTACCGG 1076 consensus_7709#1 ------------------------------------------------------------ consensus_7709#0 TAGCGATCGG 1086 consensus_7709#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||