These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7717#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1157 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTAATCATCATCAATAGCCACACATTTCTCGTGCGATTTTATTTAAACTAGCTTTGGAGAGCCCATCTCCTTGTACTTTCTTGTCGAGCACAAGACTATACGATGTTTATACCATTTCAATTTTTGAAAGACCTGCGTATAGTAAACGTTTCTTTAGAGAAATCATCACACATAAAGGGCAAATTGAAAGAGAAAGAAGAAAAGCGCAGAGGCAGTAAGAGAAGAAGAAAGCAGAAAGTTAGAGATAATTGTGTAAATGTGTCTGGTCAGTGCTTACGAACAAAATTAAAAGGTTGCTTTAAAGCCTTACATGGTTACACGATTAATCAATGCGAAAATGGAAACTTAACGGTCTGACAAAGAAAAAGAATGACGGCCTGAAGGAAAAGTAGATACACACATGTAAACAATAAAATCGACAACTACTGTTTGATACTACGATATGT-AAACTAATTTCTTGCTAACCTGTTTCGCCGTGATACTGGGAAATGCTGAGAATTTCGTTTTCCTCAAGATCGGGCTGCTGGAATTGTTGCTCTTGCTGTTGTTGTAGTTGCACCGCCAGTGATAGGTTCATGCGGGTGTTTGAAAATATCGTGTCACCTGCGTTTCCAGGTGTCAGTGCTACTGGCGGAGGACGTAATCTGGCAGGATCGAGCAGTGATTGCATTTTGGAGTGTTTTTTCACCGGCGTTCGATTTGGTGAAGATTTTCGACTGCTTGAGTAAGAT-TTCAACATTTTTGTAGCTTCGGACAGTTTCTTGAGCAAGCGTTGGTATGATTGATACTCCTCCTCGCCAAATTCGTTTGGATCATGCCGAGCATGGTCATACCTGCAACGACATTAGGCTAGTTAGTGTCGACACTTGAGTTAGCCTAGCGTAACTCACATATCACAGAACTGATGAATCAGTCGTTGACCGGATCCATTCAGAGGAGCCGCAAGTGTAGTCAGAAGAAACGCCCTCATGCTATCTCTAGGATGCCTGGTAGCCCCGTCCTGTTTGGCGATTTCCCTTTCCAGCTCTTTCACATCATCCACTGCCTTCATGCGCCAGTAGTACGGCGGTAATGTGGTATCAGGTTTGAAAATGTATTTTTCATCGTCTTGCTGCTATCATCCCAAAACCTCGGGGA] [+] EMBL AGA284556 [TTTTTTTTTTTTTTTTTTTTTTAATCATCATCAATAGCCACACATTTCTCGTGCGATTTTATTTAAACTAGCTTTGGAGAGCCCATCTCCTTGTACTTTCTTGTCGAGCACAAGACTATACGATGTTTATACCATTTCAATTTTTGAAAGACCTGCGTATAGTAAACGTTTCTTTAGAGAAATCATCACACATAAAGGGCAAATTGAAAGAGAAAGAAGAAAAGCGCAGAGGCAGTAAGAGAAGAAGAAAGCAGAAAGTTAGAGATAATTGTGTAAATGTGTCTGGTCAGTGCTTACGAACAAAATTAAAAGGTTGCTTTAAAGCCTTACATGGTTACACGATTAATCAATGCGAAAATGGAAACTTAACGGTCTGACAAAGAAAAAGAATGACGGCCTGAAGGAAAAGTAGATACACACATGTAAACAATAAAATCGACAACTACTGTTTGATACTACGATATGT AAACTAATTTCTTGCTAACCTGTTTCGCCGTGATACTGGGAAATGCTGAGAATTTCGTTTTCCTCAAGATCGGGCTGCTGGAATTGTTGCTCTTGCTGTTGTTGTAGTTGCACCGCCAGTGATAGGTTCATGCGGGTGTTTGAAAATATCGT ] [-] EMBL BX627925 [ TACTACGATATGTAAAACTAATTTCTTGCTAACCTGTTTCGCCGTGATACTGGGAAATGCTGAGAATTTCGTTTTCTTCAAGATCGGGCTGCTGGAATTGTTGCTCTTGCTGTTGTTGTAGTTGCACCGCCAGTGATAGGTTCATGCGGGTGTTTGAAATTATCGTGTCACCTGCGTTTCCAGGTGTCAGTGCTACTGGCGGAGGACGTAATCTGGCAGGATCGAGCAGTGATTGCATTTTGGAGTGTTTTTTCACCGGCGTTCGATTTGGTGAAGATTTTCGACTGCTTGAGTAAGAT TTCAACATTTTTGTAGCTTCGGACAGTTTCTTGAGCAAGCGTTGGTATGATTGATACTCCTCCTCGCCAAATTCGTTTGGATCATGCCGAGCATGGTCATACCTGCAACGACATTAGGCTAGTTAGTGTCGACACTTGAGTTAGCCTAGCGTAACTCACATATCACAGAACTGATGAATCAGTCGTTGACCGGATCCATTCAGAGGAGCCGCAAGTGTAGTCAGAAGAAACGCCCTCATGCTATCTCTAGGATGCCTGGTAGCCCCGTCCTGTTTGGCGATTTCCCTTTCCAGCTCTTTCACATCATCCACTGCCTTCATGCGCCAGTAGTACGGCGGTAATGTGGTATCAGGTTTGAAAATGTATTT ] [-] EMBL BX612225 [ TTTCGCCGTGATACTGGGAAATGCTGAGAATTTCGTTTTCCTCAAGATCGGGCTGCTGGAATTGTTGCTCTTGCTGTTGTTGTAGTTGCACCGCCAGTGATAGGTTCATGCGGGTGTTTGA ] [-] EMBL AL695157 [ CTGCTTGAGTAAGATNTTC ACATTTTTGTAGCTTCGGACAGTTTCTTGAGCAAGCGTTGGTATGATTGATACTCCTCCTCGCCAAATTCGTTTGGATCATGCCGAGCATGGTCATACCTGCAACGACATTAGGCTAGTTAGTGTCGACACTTGAGTTAGCCTAGCGTAACTCACATATCACAGAACTGATGAATCAGTCGTTGACCGGATCCATTCAGAGGAGCCGCAAGTGTAGTCAGAAGAAACGCCCTCATGCTATCTCTAGGATGCCTGGTAGCCCCGTCCTGTTTGGCGATTTCCCTTTCCAGCTCTTTCACATCATCCACTGCCTTCATGCGCCAGTAGTAC GCGGTAATGTGGTATCAGGTTTGAAAATGTATTTTTCATCGTCTTGCTGCTATCATCCCAAAACCTCGGGGA] consensusID : consensus_7717#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1004 fasta sequence [AGCTTTGGAGAGCCCATCTCCTTGTACTTTCTTGTCGAGCACAAGACTAAAAAATGTTTATACCATTTCAATTTTTGAAAGACCTGTTTCGCCGTGATACTGGGAAATGCTGAGAATTTCGTTTTCCTCAAGATCGGGCTGCTGGAATTGTTGCTCTTGCTGTTGTTGTAGTTGCACCGCCAGTGATAGGTTCATGCGGGTGTTTGAAATTATCGTGTCACCTGCGTTTCCAGGTGTCAGTGCTACTGGCGGAGGACGTAATCTGGCAGGATCGAGCAGTGATTGCATTTTGGAGTGTTTTTTCACCGGCGTTCGATTTGGTGAAGATTTTCGACTGCTTGAGTAAGATTTCAACATTTTTGTAGCTTCGGACAGTTTCTTGAGCAAGCGTTGGTATGATTGATACTCCTCCTCGCCAAATTCGTTTGGATCATGCCGAGCATGGTCATACATATCACAGAACTGATGAATCAGTCGTTGACCGGATCCATTCAGAGGAGCCGCAAGTGTAGTCAGAAGAAACGCCCTCATGCTATCTCTAGGATGCCTGGTAGCCCCGTCCTGTTTGGCGATTTCCCTTTCCAGCTCTTTCACATCATCCACTGCCTTCATGCGCCAGTAGTACGGCGGTAATGTGGTA-TCAGGTTTGAAAATGTATTTTTCATCGTCTTGCTGCTTATCATCCCAAATGAGTTTTGGTTCGTAGTAAATTTTTTGTATACAGTCGATTCTACGCTCAATTTCCTTTTTGATGGACTTTTTAGTATCATGTCCAACAGCGACGTGGGGCCCACGTCTTTGTCTGAGCGTAAATCGGACGATCTGGCGC-TTTGCAAAAATGAAACACATTGTAACTCCTAAAACGCCACCACCTATAATCAACACGATCATAACTCCCGACAACTCCTCGCATTTCGTTTTGTATATTTTGCGACGCTTGGCTTGAATTCTAGAGCATAATGCACAACGCAACTTATTTCAC-GCGCCGATGAATATTCGATCCA] [-] EMBL CNS0938B [AGCTTTGGAGAGCCCATCTCCTTGTACTTTCTTGTCGAGCACAAGACTAAAAAATGTTTATACCATTTCAATTTTTGAAAGACCTGTTTCGCCGTGATACTGGGAAATGCTGAGAATTTCGTTTTCCTCAAGATCGGGCTGCTGGAATTGTTGCTCTTGCTGTTGTTGTAGTTGCACCGCCAGTGATAGGTTCATGCGGGTGTTTGAAATTATCGTGTCACCTGCGTTTCCAGGTGTCAGTGCTACTGGCGGAGGACGTAATCTGGCAGGATCGAGCAGTGATTGCATTTTGGAGTGTTTTTTCACCGGCGTTCGATTTGGTGAAGATTTTCGACTGCTTGAGTAAGATTTCAACATTTTTGTAGCTTCGGACAGTTTCTTGAGCAAGCGTTGGTATGATTGATACTCCTCCTCGCCAAATTCGTTTGGATCATGCCGAGCATGGTCATACATATCACAGAACTGATGAATCAGTCGTTGACCGGATCCATTCAGAGGAGCCGCAAGTGTAGTCAGAAGAAACGCCCTCATGCTATCTCTAGGATGCCTGGTAGCCCCGTCCTGTTTGGCGATTTCCCTTTCCAGCTCTTTCACATCATCCACTGCCTTCATGCGCCAGTAGTACGGCGGTAATGTGGTA TCAGGTTTGAAAATGTATTTTTCATCGTCTTGCTGCTTATCATCCCAAATGAGTTTTGGTTCGTAGTAAATTTTTTGTATACAGTCGATTCTACGCTCAATTTCCTTTTTGATGGACTTTTTAGTATCATGTCCAACAGCGACGTGGGGCCCACGTCTTTGTCTGAGCGTAAATCGGACGATCTGGCGCTTTTGCAAAAATGAAACACATTGTAACTCCTAAAACGCCACCACCTATAATCAACACGATCATAACTCCCGACAACTCCTCGCATTTCGTTTTGTATATTTTGCGACGCTTGGCTTGAATTCTAGAGCATAATGCACAACGCAACTTATTTCAC GCGCCGATGAATATTCGATCCA] [+] EMBL CNS0938C [ atacgATGTTTATACCATTTCAATTTTTGAAAGACCTGTTTCGCCGTGATACTGGGAAATGCTGAGAATTTCGTTTTCCTCAAGATCGGGCTGCTGGAATTGTTGCTCTTGCTGTTGTTGTAGTTGCACCGCCAGTAATAGGTTCATGCGGGTGTTTGAAATTATCGTGTCACCTGCGTTTCCAGGTGTCAGTTCTACTGGCGGAGGACGTAATCTGGCAGGATCGAGCAGTGATTGCATTTTGGAGTTTTTTTTCACCGGCGTTCGATTTGGTGAAGATTTTCGACTGCTTGAGTAAAATTTCAACATTTTTGTAGCTTCGGACAGTTTCTTGAGCAAGCGTTGGTATGATTGATACCCCCCCCCGCCAAATTCGTTTGGATCATGCCGAGCATGGTCATACATATCACAGAACTGATGAATCAGTCGTTGACCGGATCCATTCAGAGGAGCCGCAAGTTTAGTCAGAAGAAACGCCCTCATGCTATCTCTAGGATGCCTGGTAGCCCCGTCCTGTTTGGCGATTTCCCTTTCCAGCTCTTTCACATCATCCACTGCCTTCATGCGCCAGTAGTACGGGGGTAATGTGGTA TCAGGTTTGAAAATGTATTTTTCATCGTCTTGCTGCTTATCATCCCAAATGAGTTTTGGTTCGTAGTAAATTTTTTGTATACAGTCGATTCTACGCTCAATTTCCTTTTTGATGGACTTTTTAGTATCATGTCCAACAGCGACGTGGGGCCCACGTCTTTGTCTGAGCGTAAATCGGACGATCTGGCGC TTTGCAAA ] [-] EMBL BM591011 [ CACCGGCGTTCGATTTGGTGAAGATTTTCGACTGCTTGAGTAAGATTTCAACATTTTTGTAGCTTCGGACAGTTTCTTGAGCAAGCGTTGGTACGATTGATACTCCTCCTCGCCAAATTCGTTTGGATCATGCCGAGCATGGTCATACATATCACAGAACTGATGAATCAGTCGTTGACCGGATCCATTCAGAGGAGCCGCAAGTGTAGTCAGAAGAAACGCCCTCATGCTATCTCTAGGATGCCTGGTAGCCCCGTCCTGTTTGGCGATTTCCCTTTCCAGCTCTTTCACATCATCCACTGCCTTCATGCGCCAGTAGTACGGCGGTAATGTGGTA TCAGGTTTCAAAATGTATTTTTCATCGTCTTGCTGCTTATCATCCCAAATGAGTTTTGGTTCGTAGTAAATTTTTTGTATACAGTCGATTCTACGCTCAATTTCCTTTTTGATGGACTTTTTAGTATCATGTCCAACGGCGACGTGGGGCCCACGTCTTTGTCTGAGCGTAAATCGGACGATCTGGCGC TTTGCAAAAATGAAACACATTGTAACTCCTAAAACGCCACCACCTATAATCAACACGATCATAACTCCCGACAACTCCTC CATTTCGTTTTGTATATTTTGCGACGCTTGGCTTGAATTCTAGAGCATAATGCACAATGCAACTTATTTCACTGCGCCGg ] [-] EMBL AGA285914 [ GGTGAAGATTTTCGACTGCTTGAGTAAGATTTCAACATTTTTGTAGCTTCGGACAGTTTCTTGAGCAAGCGTTGGTATGATTGATACTCCTCCTCGCCAAATTCGTTTGGATCATGCCGAGCATGGTCATACATCTCACAGAACTGATGAATCAGTCGTTGACCGGATCCATTCAGAGGAGCCGCAAGTGTAGTCAGAAGAAACGCCCTCATGCTATCTCTAGGATGCCTGGTAGCCCCGTCCTGTTTGGCGATTTCCCTTTCCAGCTCTTTCACATCATCCACTGCCTTCATGCGCCAGTAGTACGGCGGTAATGTGGTATTCAGGTTTGAAAATGTATTTTTCATCGTCTTGCTGCTTATCATCCCAAAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7717#0 TTTTTTTTTTTTTTTTTTTTTTAATCATCATCAATAGCCACACATTTCTCGTGCGATTTT 60 consensus_7717#1 ------------------------------------------------------------ consensus_7717#0 ATTTAAACTAGCTTTGGAGAGCCCATCTCCTTGTACTTTCTTGTCGAGCACAAGACTATA 120 consensus_7717#1 ------------------------------------------------------------ consensus_7717#0 CGATGTTTATACCATTTCAATTTTTGAAAGACCTGCGTATAGTAAACGTTTCTTTAGAGA 180 consensus_7717#1 ------------------------------------------------------------ consensus_7717#0 AATCATCACACATAAAGGGCAAATTGAAAGAGAAAGAAGAAAAGCGCAGAGGCAGTAAGA 240 consensus_7717#1 ------------------------------------------------------------ consensus_7717#0 GAAGAAGAAAGCAGAAAGTTAGAGATAATTGTGTAAATGTGTCTGGTCAGTGCTTACGAA 300 consensus_7717#1 ------------------------------------------------------------ consensus_7717#0 CAAAATTAAAAGGTTGCTTTAAAGCCTTACATGGTTACACGATTAATCAATGCGAAAATG 360 consensus_7717#1 ------------------------------------------------------------ consensus_7717#0 GAAACTTAACGGTCTGACAAAGAAAAAGAATGACGGCCTGAAGGAAAAGTAGATACACAC 420 consensus_7717#1 -----------------------------------------AGCTTTGGAGAGCCCATCT 19 ** * ** consensus_7717#0 ATGTAAACAATAAAATCGACAACTACTGTTTGATACTACGATATGTAAACTAATTTCTTG 480 consensus_7717#1 CCTTGTACTTTCTTGTCGAGCACAAGACTAAAAAATGTTTATAC-CATTTCAATTTTTGA 78 * ** * **** ** * * * * *** * ***** * consensus_7717#0 CTAACCTGTTTCGCCGTGATACTGGGAAATGCTGAGAATTTCGTTTTCCTCAAGATCGGG 540 consensus_7717#1 AAGACCTGTTTCGCCGTGATACTGGGAAATGCTGAGAATTTCGTTTTCCTCAAGATCGGG 138 ********************************************************* consensus_7717#0 CTGCTGGAATTGTTGCTCTTGCTGTTGTTGTAGTTGCACCGCCAGTGATAGGTTCATGCG 600 consensus_7717#1 CTGCTGGAATTGTTGCTCTTGCTGTTGTTGTAGTTGCACCGCCAGTGATAGGTTCATGCG 198 ************************************************************ consensus_7717#0 GGTGTTTGAAAATATCGTGTCACCTGCGTTTCCAGGTGTCAGTGCTACTGGCGGAGGACG 660 consensus_7717#1 GGTGTTTGAAATTATCGTGTCACCTGCGTTTCCAGGTGTCAGTGCTACTGGCGGAGGACG 258 *********** ************************************************ consensus_7717#0 TAATCTGGCAGGATCGAGCAGTGATTGCATTTTGGAGTGTTTTTTCACCGGCGTTCGATT 720 consensus_7717#1 TAATCTGGCAGGATCGAGCAGTGATTGCATTTTGGAGTGTTTTTTCACCGGCGTTCGATT 318 ************************************************************ consensus_7717#0 TGGTGAAGATTTTCGACTGCTTGAGTAAGATTTCAACATTTTTGTAGCTTCGGACAGTTT 780 consensus_7717#1 TGGTGAAGATTTTCGACTGCTTGAGTAAGATTTCAACATTTTTGTAGCTTCGGACAGTTT 378 ************************************************************ consensus_7717#0 CTTGAGCAAGCGTTGGTATGATTGATACTCCTCCTCGCCAAATTCGTTTGGATCATGCCG 840 consensus_7717#1 CTTGAGCAAGCGTTGGTATGATTGATACTCCTCCTCGCCAAATTCGTTTGGATCATGCCG 438 ************************************************************ consensus_7717#0 AGCATGGTCATACCTGCAACGACATTAGGCTAGTTAGTGTCGACACTTGAGTTAGCCTAG 900 consensus_7717#1 AGCATGGTCATAC----------------------------------------------- 451 ************* consensus_7717#0 CGTAACTCACATATCACAGAACTGATGAATCAGTCGTTGACCGGATCCATTCAGAGGAGC 960 consensus_7717#1 ----------ATATCACAGAACTGATGAATCAGTCGTTGACCGGATCCATTCAGAGGAGC 501 ************************************************** consensus_7717#0 CGCAAGTGTAGTCAGAAGAAACGCCCTCATGCTATCTCTAGGATGCCTGGTAGCCCCGTC 1020 consensus_7717#1 CGCAAGTGTAGTCAGAAGAAACGCCCTCATGCTATCTCTAGGATGCCTGGTAGCCCCGTC 561 ************************************************************ consensus_7717#0 CTGTTTGGCGATTTCCCTTTCCAGCTCTTTCACATCATCCACTGCCTTCATGCGCCAGTA 1080 consensus_7717#1 CTGTTTGGCGATTTCCCTTTCCAGCTCTTTCACATCATCCACTGCCTTCATGCGCCAGTA 621 ************************************************************ consensus_7717#0 GTACGGCGGTAATGTGGTATCAGGTTTGAAAATGTATTTTTCATCGTCTTGCTGCT-ATC 1139 consensus_7717#1 GTACGGCGGTAATGTGGTATCAGGTTTGAAAATGTATTTTTCATCGTCTTGCTGCTTATC 681 ******************************************************** *** consensus_7717#0 ATCCCAAA--ACCTCGGGGA---------------------------------------- 1157 consensus_7717#1 ATCCCAAATGAGTTTTGGTTCGTAGTAAATTTTTTGTATACAGTCGATTCTACGCTCAAT 741 ******** * * ** consensus_7717#0 ------------------------------------------------------------ consensus_7717#1 TTCCTTTTTGATGGACTTTTTAGTATCATGTCCAACAGCGACGTGGGGCCCACGTCTTTG 801 consensus_7717#0 ------------------------------------------------------------ consensus_7717#1 TCTGAGCGTAAATCGGACGATCTGGCGCTTTGCAAAAATGAAACACATTGTAACTCCTAA 861 consensus_7717#0 ------------------------------------------------------------ consensus_7717#1 AACGCCACCACCTATAATCAACACGATCATAACTCCCGACAACTCCTCGCATTTCGTTTT 921 consensus_7717#0 ------------------------------------------------------------ consensus_7717#1 GTATATTTTGCGACGCTTGGCTTGAATTCTAGAGCATAATGCACAACGCAACTTATTTCA 981 consensus_7717#0 ----------------------- consensus_7717#1 CGCGCCGATGAATATTCGATCCA 1004 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||