These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7721#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 760 fasta sequence [CCGCCCACGCGTCCGGAGGAAAATAATGACGAGGAGGAAGACGGCAAGAGTGATTACACGAGCGAGGACATTTCGGATGACGAGGGTACGGATGGCGCAGATGGGCTTGAATATGACGATGATGATGACGATAGTATCGTTTTCTGCGAAGATTATGACGCCCTGAACGATGATTCCAACTCTTCGTCCGGATTCGAGGAGAAGAAGGTTCGGTTCAACTCAAAACCGGTGGTGCACGTTATGAGAGCATGGGACTTTGCCTACCGCCAAGCACGCAAAGGCGAATGGGAGATGGCAGCCAGAGATAGAGAGCGATTCCGGAAGCGCATCGCCGAACTAGAACCTTTGCTAGGTCCAGCACTACAGCCAGCGTTACGTGATAAAGTGTACTCCGAGCGGTTCAGCGGGGAGGAAAGTACGCGCAAGATCTTAAACTGAAAGTGAAACAAACCCAAGAGGAGTCCCGTTACTAGAGTTACATGTGTATGCTAGTTTGTTTTTGTTTGCTTTTGGCATCATTACACATGTGCCCTGTACAGACGGTTACTCCCCCACACACCTGCACATGCGCTTTCAAAGGGTAGCCAATAAGTAAAGTTTCTGCATTATATTTATACGGTAAAAACAGTTTTTGCTTTAATTTAAACATTACAAAGTTTTGTTTTATATTCCTATCCACGTGG-AAATGTTGAAGGGAATTCAAACATTTTCGCATTGTGGTCATGAATTAGGAATAAACTTCTGGCTTTTTCAGGATCGT] [+] EMBL BM606375 [CCGCCCACGCGTCCGGAGGAAAATAATGACGAGGAGGAAGACGGCAAGAGTGATTACACGAGCGAGGACATTTCGGATGACGAGGGTACGGATGGCGCAGATGGGCTTGAATATGACGATGATGATGACGATAGTATCGTTTTCTGCGAAGATTATGACGCCCTGAACGATGATTCCAACTCTTCGTCCGGATTCGAGGAGAAGAAGGTTCGGTTCAACTCAAAACCGGTGGTGCACGTTATGAGAGCATGGGACTTTGCCTACCGCCAAGCACGCAAAGGCGAATGGGAGATGGCAGCCAGAGATAGAGAGCGATTCCGGAAGCGCATCGCCGAACTAGAACCTTTGCTAGGTCCAGCACTACAGCCAGCGTTACGTGATAAAGTGTACTCCGAGCGGTTCAGCGGGGAGGAAAGTACGCGCAAGATCTTAAACTGAAAGTGAAACAAACCCAAGAGGAGTCCCGTTACTAGAGTTACATGTGTATGCTAGTTTGTTTTTGTTTGCTTTTGGCATCATTACACATGTGCCCTGTACAGGCGGTTACTCCCCCACACACCTGCACATGCGCTTTCAAAGGGTAGCCAATAAGTAAAGTTTCTGCATTATATTTATACGGTAAAAACAGTTTTTGCTTTAATTTAAACATTACAAAGTTTTGTTTTATATTCCTATCCACGTGGCAAATGTTGAAGGGAATTCA ] [+] EMBL BX621709 [ GAGGAAGACGGCAAGAGTGATTACACGAGCGAGGACATTTCGGATGACGAGGGTACGGATGGCGCAGATGGGCTTGAATATGACGATGATGATGACGATAGTATCGTTTTCTGCGAAGATTATGACGCCCTGAACGATGATTCCAACTCTTCGTCCGGATTCGAGGAAAAGAAGGTTCGGTTCAACTCAAAACCGGTGGTGCACGTTATGAGAGCATGGGACTTTGCCTACCGCCAAGCACGCAAAGGCGAATGGGAGATGGCAGCCAGAGATAGAGAGCGATTCCGGAAGCGCATCGCCGAACTAGAACCTTTGCTAGGTCCAGCACTACAGCCAGCGTTACGTGATAAAGTGTACTCCGAGCGGTTCAGCGGGGAGGAAAGTACGCGCAAGATCTTAAACTGAAAGTGAAACAAACCCAAGAGGAGTCCCGTTACTAGAGTTACATGTGTGTGCTAGTTTGTTTTTGTTTGCTTTTGGCATCATTACACATGTGCCCTGTACAGACGGTTACTCCCCCACACACCTGCACATGCGCTTTCTAAGGGTAGCCAATAAGTAAAGTTTCTGCATTATATTTATACGGTAAAAACAGTTTTTGCTTTAATTTAAACATTACAAAGTTTTGTTTTATATTCCTATCCATGTGG AAATGTTAAAGGAAATTCAAACATTTTCGCATTGTGGTCATGAATTAng ] [+] EMBL BM640824 [ ccgCGTTTTCTGCGAAGATTATGACGCCCTGAACGATGATTCCAACTCGTCGTCCGGATTCGAGGAGAAGAAGGTTCGGTTCAACTCAAAACCGGTGGTGCACGTTATGAGAGCATGGGACTTTGCCTACCGCCAAGCACGCAAAGGCGAATGGGAGATGGCAGCCAGAGATAGAGAGCGATTCCGGAAGCGCATCGCCGAACTAGAACCTTTGCTAGGTCCAGCACTACAGCCAGCGTTACGTGATAAAGTGTACTCCGAGCGGTTCAGCGGGGAGGAAAGTACGCGCAAGATCTTAAACTGAAAGTGAAACAAACCCAAGAAGAGTCCCGTTACTAGAGTTACATGTGTATGCTAGTTTGTTTTTGTTTGCTTTTGGCATCATTACACATGTGCCCTGTACAGACGGTTACTCCTCCCCACACCTGCACATGCGCTTTCTAAGGGTAGCCAATAAGTAAAGTTTCTGCATTATATTTATACGGTAAAAACAGTTTTTGCTTTAATTTAAACATTACAAAGTTTTGTTTTATATTCCTATCCACGTGG AAATGTTGAAGGGAATTCAAACATTTTCGC ] [+] EMBL AGA280819 [ ttTTTTGTCATCTTTACACATGTGCCCTGTACAGACGGTTACTCCCCCACACACCTGCACATGCGCTTTCAAAGGATAGCCAATAAGTAAAGTTTCTGCATTATATTTATACGGTAAAAACAGTTTTTGCTTTAATTTAAACATTACAAAGTTTTGTTTTATATTCCTATCCACGTGG AAATGTTGAAGGGAATTCAAACATTTTCGCATTGTGGTCATGAATTAGGAATAAACTTCTGGCTTTTTCAGGATCGT] [-] EMBL AGA282441 [ ttTTTTGTCATCTTTACACATGTGCCCTGTACAGACGGTTACTCCCCCACACACCTGCACATGCGCTTTCAAAGGATAGCCAATAAGTAAAGTTTCTGCATTATATTTATACGGTAAAAACAGTTTTTGCTTTAATTTAAACATTACAAAGTTTTGTTTTATATTCCTATCCACGTGG AAATGTTGAAGGGAATTCAAACATTTTCGCATTGTGGTCATGAATTAGGAATAAACTTCTGGCTTTTT ] [+] EMBL BX614928 [ CACGTGCACATGCGCTTTCAAAGGATAGCTAATAAGTAAAGTTTCTGCATTATATTTATACGGTAAAAACAGTTTTTGCTTTAATTTAAACATTACAAAGTTTTGTTTTATATTCTTATCAATGTGG AAATGTTGAAGGGAAATCAAACATTTTCGCATTGTGGTCATGAATTAGGAATAAACTTCTGGCTTTT ] consensusID : consensus_7721#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence [CCGCCCACGCGTCCGAACGGGTGGTACCAAAATGTCCCTGCCAAACAAGCGCTTACTGTTGCGCCCGATTCGGTGGACAGGATCGGCGAACAAAGCAAGCTGAAATGTGATATCGAACCTAGCAACCACAATGAATATGTAGTGTTCAGCGACTACGACGTGTTTACTACTCCATCTGCCAGCCCTGCGCGACGACGTCCTCCTCGTCGTAATTTTTGTCCAGCTTTGAGTTTTGTTTTGCACCACCAGCATTCAGACGATAGCCAAGAGGAAAATAATGACGAGGAGGAAGACGGCAAGAGTGATTACACGAGCGAGGACATTTCGGATGACGAGGGTACGGATGGCGCAGATGGGCTTGAATATGACGATGATGATGACGATAGTATCGTTTTCTGCGAAGATTACGACGCCCTGAACGATGATTCCAATTCGTCGTCCGGATTCGAGGAGAAGAAGGTTCGGTTCAACTCAAAACCGGTGGTGCACGTTATGAGAGCATGGGACTTTGCCTACCGCCAAGCACGCAAAGGCGAATGGGAGATGGCAGC] [+] EMBL BM621470 [CCGCCCACGCGTCCGAACGGGTGGTACCAAAATGTCCCTGCCAAACAAGCGCTTACTGTTGCGCCCGATTCGGTGGACAGGATCGGCGAACAAAGCAAGCTGAAATGTGATATCGAACCTAGCAACCACAATGAATATGTAGTGTTCAGCGACTACGACGTGTTTACTACTCCATCTGCCAGCCCTGCGCGACGACGTCCTCCTCGTCGTAATTTTTGTCCAGCTTTGAGTTTTGTTTTGCACCACCAGCATTCAGACGATAGCCAAGAGGAAAATAATGACGAGGAGGAAGACGGCAAGAGTGATTACACGAGCGAGGACATTTCGGATGACGAGGGTACGGATGGCGCAGATGGGCTTGAATATGACGATGATGATGACGATAGTATCGTTTTCTGCGAAGATTACGACGCCCTGAACGATGATTCCAATTCGTCGTCCGGATTCGAGGAGAAGAAGGTTCGGTTCAACTCAAAACCGGTGGTGCACGTTATGAGAGCATGGGACTTTGCCTACCGCCAAGCACGCAAAGGCGAATGGGAGATGGCAGC] consensusID : consensus_7721#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [CCGGCACCTTCATGCGTCTTCCGACAGTATGACCGCAGCACCTGCGTTGTCGGTCAACGGGTGGTACCAAAATGTCCCTGCCAAACAAGCGCTTACTGTTGCGCCCGATTCGGTGGACAGGATCGGCGAACAAAGCAAGCTGAAATGTGATATCGAACATAACAACCACAATGAATATGTAGTGTTCAGCGACTACGACGTGTTTACTACTCCATCTGCCAGCCCTGCGCGACGACGTCCTCCTCGTCGTAATTTTTGTCCAGCTTTGAGTTTTGTTTTGCACCACCAGCATTCAGACGATAGCCAAGAGGAAAATAATGACGAGGAGGAAGACGGCAAGAGTGATTACACGAGCGAGGACATTTCGGATGACGAGGGTACGGATGGCGCAGATGGGCTTGAATATGACGATGATGATGACGATAGTATCGTTTTCTGCGAAGATT] [+] EMBL BM605027 [CCGGCACCTTCATGCGTCTTCCGACAGTATGACCGCAGCACCTGCGTTGTCGGTCAACGGGTGGTACCAAAATGTCCCTGCCAAACAAGCGCTTACTGTTGCGCCCGATTCGGTGGACAGGATCGGCGAACAAAGCAAGCTGAAATGTGATATCGAACATAACAACCACAATGAATATGTAGTGTTCAGCGACTACGACGTGTTTACTACTCCATCTGCCAGCCCTGCGCGACGACGTCCTCCTCGTCGTAATTTTTGTCCAGCTTTGAGTTTTGTTTTGCACCACCAGCATTCAGACGATAGCCAAGAGGAAAATAATGACGAGGAGGAAGACGGCAAGAGTGATTACACGAGCGAGGACATTTCGGATGACGAGGGTACGGATGGCGCAGATGGGCTTGAATATGACGATGATGATGACGATAGTATCGTTTTCTGCGAAGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7721#1 ------------------------------------------------------------ consensus_7721#2 ----------------------------------------------------------CC 2 consensus_7721#0 CCGCCCACGCGTCCGGAGGAAAATAATGACGAGGAGGAAGACGGCAAGAGTGATTACACG 60 consensus_7721#1 ------------------------------------CCGCCCACGCGTCCG---AACG-- 19 consensus_7721#2 GGCACCTTCATG-CGTCTTCCGACAGTATGACCGCAGCACCTGCGTTGTCGGTCAACG-- 59 consensus_7721#0 AGCGAGGACATTTCGGATGACGAGGGTACGGATGGCGCAGATGGGCTTGAATATGACGAT 120 * * *** consensus_7721#1 GGTGGTACCAA-AATGTC----CCTGCCAAAC-----AAGCGCTTACTGTTGCGCCCGAT 69 consensus_7721#2 GGTGGTACCAA-AATGTC----CCTGCCAAAC-----AAGCGCTTACTGTTGCGCCCGAT 109 consensus_7721#0 GATGATGACGATAGTATCGTTTTCTGCGAAGATTATGACGCCCTGAACGATGATTCCAAC 180 * ** * * * * * ** **** ** * ** ** * * ** ** * consensus_7721#1 TCGGTGGACAGGATCGGCGAACAAAGCA--------AGCTGAAATGTGATATCGAACCTA 121 consensus_7721#2 TCGGTGGACAGGATCGGCGAACAAAGCA--------AGCTGAAATGTGATATCGAACATA 161 consensus_7721#0 TCTTCGTCCGGATTCGAGGAGAAGAAGGTTCGGTTCAACTCAAAACCGGTGGTGCACGTT 240 ** * * * *** ** * * * ** *** * * * ** * consensus_7721#1 GCAACCACAATGAA---TATGTAGTGTTCAGCG-ACTACGACGTGTTTACTACTCCATCT 177 consensus_7721#2 ACAACCACAATGAA---TATGTAGTGTTCAGCG-ACTACGACGTGTTTACTACTCCATCT 217 consensus_7721#0 ATGAGAGCATGGGACTTTGCCTACCGCCAAGCACGCAAAGGCGAATGGGAGATGGCAGCC 300 * ** * * * ** * *** * * * ** * * ** * consensus_7721#1 GCCAGCCCTGCGCGACGACGTC--CTCCTCGTCGTA-----ATTTTTG-----TCCAGCT 225 consensus_7721#2 GCCAGCCCTGCGCGACGACGTC--CTCCTCGTCGTA-----ATTTTTG-----TCCAGCT 265 consensus_7721#0 AGAGATAGAGAGCGATTCCGGAAGCGCATCGCCGAACTAGAACCTTTGCTAGGTCCAGCA 360 * **** ** * * *** ** * * **** ****** consensus_7721#1 TTGAGTTTTGTTTTGCACCACCA---GCATTCAGA-CGAT--AGCCAAGAGGAAAATAAT 279 consensus_7721#2 TTGAGTTTTGTTTTGCACCACCA---GCATTCAGA-CGAT--AGCCAAGAGGAAAATAAT 319 consensus_7721#0 CTACAGCCAGCGTTACGTGATAAAGTGTACTCCGAGCGGTTCAGCGGGGAGGAAAGTACG 420 * * ** * * * * * ** ** ** * *** ******* ** consensus_7721#1 GACGAGGAGGAAGACGGCAAGAGTGATTACACGAGCGAGGACATTTCGGATGACGAGGGT 339 consensus_7721#2 GACGAGGAGGAAGACGGCAAGAGTGATTACACGAGCGAGGACATTTCGGATGACGAGGGT 379 consensus_7721#0 CGCAAGATCTTAAACTG--AAAGTGAA-ACAAACCCAAGAGGAGTCCCGTTACTAGAGTT 477 * ** * ** * * ***** *** * ** * * * * * * * consensus_7721#1 ACGGATG-GCGCAGATGGGCTTGAATATGACGATGATGATGACGATAGTATCGTTTTCTG 398 consensus_7721#2 ACGGATG-GCGCAGATGGGCTTGAATATGACGATGATGATGACGATAGTATCGTTTTCTG 438 consensus_7721#0 ACATGTGTATGCTAGTTTGTTTTTGTTTGCTTTTGGC-ATCATTACACATGTGCCCTGTA 536 ** ** ** * * ** * ** ** ** * * * * * * consensus_7721#1 CGAA-GATTACGACGCCCTGAACGATGATTCCAATTCGTCGTCCGGATTCGAGGAGAAGA 457 consensus_7721#2 CGAA-GATT--------------------------------------------------- 446 consensus_7721#0 CAGACGGTTACTCCCCCACACACCTGCACATGCGCTTTCAAAGGGTAGCCAATAAGTAAA 596 * * * ** consensus_7721#1 AGGTTCGGTTCAACTCAAAACCGGTGGTGCACGTTATGAGAGCATGGGACTTTGCCTACC 517 consensus_7721#2 ------------------------------------------------------------ consensus_7721#0 GTTTCTGCATTATATTTATACGGTAAAAACAGTTTTTGCTTTAATTTAAACATTACAAAG 656 consensus_7721#1 GCCAAGCACGCAAAGGCGAATGGGAGATGGCAGC-------------------------- 551 consensus_7721#2 ------------------------------------------------------------ consensus_7721#0 TTTTGTTTTATATTCCTATCCACGTGGAAATGTTGAAGGGAATTCAAACATTTTCGCATT 716 consensus_7721#1 -------------------------------------------- consensus_7721#2 -------------------------------------------- consensus_7721#0 GTGGTCATGAATTAGGAATAAACTTCTGGCTTTTTCAGGATCGT 760 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||