cluster # 7725

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Anopheles gambiae
cluster # 7725 cluster # 7725 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7725#0 length = 387 sequences # 5

consensus_7725#1 length = 354 sequences # 3

consensusID : consensus_7725#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 387
fasta sequence

                              [CACTGGGATTATTACATCGAGGTTGCAAA-CATCTAACCCATTGCATCGCAAATCCATCCAGCTGCACCGAAAATGAAATTGCTGT-GGTTGGTCGTGTTGCTGGTGGCCCTGGTGTGCGGCACTTACGGGCAGGAGTGCCCCAAAGGCTTCAATGCGCAGCAAG-GCAAGTGCGTAGCGCAGCGCCCGGTGCACGGTGACTGTCCGCCCAACTCCAAGTACGACCTCAACCAGAATCTGTGCGTTTACACCTGAGTGATGGGGCTGATCCTTCCCGGGCTTGTGTGTGTGTGTGTGGAGAGCATGGTGTGATTGAATAAATTTACCTTTATACCCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGCCCGAGCTGGG]

[-] EMBL CNS08Z5X             [CACTGGGATTATTACATCGAGGTTGCAAACCATCTAACCCATTGCATCGCAAATCCATCCAGCTGCACCGAAAATGAAATTGCTGTGGGTTGGTCGTGTTGCTGGTGGCCCTGGTGTGCGGGACTTACGGGCAGGAGTGCCCCAAAGGCTTCAATGCGCAGCAAG GCAAGTGCGTAGCGCAGCGCCCGGTGCACGGTGACTGTCCGCCCAACTCCAAGTACGACCTCAACCAGAATCTGTGCGTTTACACCTGAGTGATGGGGCTGATCCTTCCCGGGCTTGTGTGTGTGTGTGTGGAGAGCATGGTGTGATTGAATAAATTTACCTTTATACCCCGAAAAAAAAAAAAAA                                      ]
[+] EMBL CNS08Z5W             [ ACTGGGATTATTACATCGAGGTTGCAAA CATCTAACCCATTGCATCGCAAATCCATCCAGCTGCACCGAAAATGAAATTGCTGT GGTTGGTCGTGTTGCTGGTGGCCCTGGTGTGCGGCACTTACGGGCAGGAGTGCCCCAAAGGCTTCAATGCGCA  AAGCGCAAGTGCGT  CGCAGCCCCCGGTGCACGGTGACTGTCCGCCCAACTCCAAGTACGACCTCAACCAGAATCTGTGCGTTTACACCTGAGTGATGGGGCTGATCCTTCCCGGGCTTGTGTGTGTGTGTGTGGAGAGCATGGTGTGATTGAATAAATTTACCTTTATACCCCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGCCCGAGCTGGG]
[+] EMBL CNS08H69             [                 CGAGGTTGC AA CATCTAACCCATTGCATCGCAAATCCATCCAGCTGCACCGAAAATGAAATTGCTGT GGTTGGTCGTGTTGCTGGTGGCCCTGGTGTGCGGCACTTACGGGCAGGAGTGCCCCAAAGGCTTCAATGCGCA  AAGCGCAAGTGCGTCGCAC GCCCCCGGTGCACGGTGACTGTCCGCCCAACTCCAAGTACGACCTCAACCAGAATCTGTGCGTTTACACCTGAGTGATGGGGCTGATCCTTCCCGGGCTTGTGTGTGTGTGTGTGGAGAGCATGGTGTGATTGAATAAATTTACCTTTATACCCCGAAAAAAAAAAAAAA                                      ]
[+] EMBL BM583029             [                        ccgac CATCTAACCCATTGCATCGCAAATCCATCCAGCTGCACCGAAAATGAAATTGCTGT GGTTGGTCGTGTTGCTGGTGGCCCTGGTGTGCGGCACTTACGGGCAGGAGTGCCCCAAAGGCTTCAATGCGCAGCAAG GCAAGTGCGTAGCGCAGCGCCCGGTGCACGGTGACTGTCCGCCCAACTCCAAGTACGACCTCAACCAGAATCTGTGCGTTTACACCTGAGTGATGGGGCTGATCCTTCCCGGGCTTGTGTGTGTGTGTGTGGAGAGCATGGTGTGATTGAATAAATTTACCTTTATACCCCG                                                    ]
[+] EMBL BM590511             [                                         ccGCATCGCAAATCCATCCAGCTGCACCGAAAATGAAATTGCTGT GGTTGGTCGTGTTGCTGGTGGCCCTGGTGTGCGGCACTTACGGGCAGGAGTGCCCCAAAGGCTTCAATGCGCAGCAAG GCAAGTGCGTAGCGCAGCGCCCGGTGCACGGTGACTGTCCGCCCAACTCCAAGTACGACCTCAACCAGAATCTGTGCGTTTACACCTGAGTGATGGGGCTGATCCTTCCCGGGCTTGTGTGTGTGTGTGTGGAGAGCATGGTGTGATTGAATAAATTTACCTTTATACCCCG                                                    ]




>consensus_7725#0
CACTGGGATTATTACATCGAGGTTGCAAACATCTAACCCATTGCATCGCAAATCCATCCA
GCTGCACCGAAAATGAAATTGCTGTGGTTGGTCGTGTTGCTGGTGGCCCTGGTGTGCGGC
ACTTACGGGCAGGAGTGCCCCAAAGGCTTCAATGCGCAGCAAGGCAAGTGCGTAGCGCAG
CGCCCGGTGCACGGTGACTGTCCGCCCAACTCCAAGTACGACCTCAACCAGAATCTGTGC
GTTTACACCTGAGTGATGGGGCTGATCCTTCCCGGGCTTGTGTGTGTGTGTGTGGAGAGC
ATGGTGTGATTGAATAAATTTACCTTTATACCCCGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAGGCCAAATGTGCCCGAGCTGGG

consensusID : consensus_7725#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 354
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCG-AGGTTGCAAACCATCTAACCCATTGAATCGCAAATCCATCCAGCTGCACCGAAAATGAAATTGCTGTGGTTGGTCGTGTTGCTGGTGGCCCTGGTGTGCGGCACTTACGGTCAGGAGTGCCCCAAAGGCTTCAATGCGCAGCAAGGCAAGTGCGTAGCGCAGCGCCCGGTGCACGGTGACTGTCCGCCCAACTCCAAGTACGACCTCAACCAGAATCTGAGCGTTTACACCTGAGTGATGGGGCTGATCCTTCCCGGGTTTGTGTGTGTGTGTGTGTGGAGAGCATGGTGTGATTGAATAAATTTACCTTTATACCCCGAAACTC]

[+] EMBL BM582103             [CCGCCCACGCGTCCGCCCACGCGTCCGCG AGGTTGCAAACCATCTAACCCATTGAATCGCAAATCCATCCAGCTGCACCGAAAATGAAATTGCTGTGGTTGGTCGTGTTGCTGGTGGCCCTGGTGTGCGGCACTTACGGTCAGGAGTGCCCCAAAGGCTTCAATGCGCAGCAAGGCAAGTGCGTAGCGCAGCGCCCGGTGCACGGTGACTGTCCGCCCAACTCCAAGTACGACCTCAACCAGAATCTGAGCGTTTACACCTGAGTGATGGGGCTGATCCTTCCCGGGTTTGTGTGTGTGTGTGTGTGGAGAGCATGGTGTGATTGAATAAATTTACCTTTATACCCCG      ]
[+] EMBL BM600690             [                  cCGCGGACGCGTGGGTTGCAAACCATCTAACCCATTGCATCGCAAATCCATCCAGCTGCACCGAAAATGAAATTGCTGTGGTTGGTCGTGTTGCTGGTGGCCCTGGTGTGCGGCACTTACGGGCAGGAGTGTCCCAAAGGCTTCAATGCGCAGCAAGGCAAGTGCGTAGCGCAGCGCCCGGTGCACGGTGACTGTCCGCCCAACTCCAAGTACGACCTCAACCAGAATCTGTGCGTTTACACCTGAGTGATGGGGCTGATCCTTCCCGGGCT  TGTGTGTGTGTGTGTGGAGAGCATGGTGTGATTGAATAAATTTACCTTTCTACCCCGAAACTC]
[+] EMBL BM606641             [                                  ccgAAACCATCTAACCCATTGAATCGCAAATCCATCCAGCTGCACCGAAAATGAAATTGCTGTGGTTGGTCGTGTTGCTGGTGGCCCTGGTGTGCGGCACTTACGGTCAGGAGTGCCCCAAAGGCTTCAATGCGCAGCAAGGCAAGTGCGTAGCGCAGCGCCCGGTGCACGGTGACTGTCCGCCCAACTCCAAGTACGACCTCAACCAGAATCTGAGCGTTTACACCTGAGTGATGGGGCTGATCCTTCCCGGGTTTGTGTGTGTGTGTGTGTGGAGAGCATGGTGTGATTGAATAAATTTACCTTTATACCCCG      ]




>consensus_7725#1
CCGCCCACGCGTCCGCCCACGCGTCCGCGAGGTTGCAAACCATCTAACCCATTGAATCGC
AAATCCATCCAGCTGCACCGAAAATGAAATTGCTGTGGTTGGTCGTGTTGCTGGTGGCCC
TGGTGTGCGGCACTTACGGTCAGGAGTGCCCCAAAGGCTTCAATGCGCAGCAAGGCAAGT
GCGTAGCGCAGCGCCCGGTGCACGGTGACTGTCCGCCCAACTCCAAGTACGACCTCAACC
AGAATCTGAGCGTTTACACCTGAGTGATGGGGCTGATCCTTCCCGGGTTTGTGTGTGTGT
GTGTGTGGAGAGCATGGTGTGATTGAATAAATTTACCTTTATACCCCGAAACTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7725#0      -----CACTGGGATTATTACAT-----CGAGGTTGCAAAC-ATCTAACCCATTGCATCGC 49
consensus_7725#1      CCGCCCACGCGTCCGCCCACGCGTCCGCGAGGTTGCAAACCATCTAACCCATTGAATCGC 60
                           ***  *       **       ************* ************* *****

consensus_7725#0      AAATCCATCCAGCTGCACCGAAAATGAAATTGCTGTGGTTGGTCGTGTTGCTGGTGGCCC 109
consensus_7725#1      AAATCCATCCAGCTGCACCGAAAATGAAATTGCTGTGGTTGGTCGTGTTGCTGGTGGCCC 120
                      ************************************************************

consensus_7725#0      TGGTGTGCGGCACTTACGGGCAGGAGTGCCCCAAAGGCTTCAATGCGCAGCAAGGCAAGT 169
consensus_7725#1      TGGTGTGCGGCACTTACGGTCAGGAGTGCCCCAAAGGCTTCAATGCGCAGCAAGGCAAGT 180
                      ******************* ****************************************

consensus_7725#0      GCGTAGCGCAGCGCCCGGTGCACGGTGACTGTCCGCCCAACTCCAAGTACGACCTCAACC 229
consensus_7725#1      GCGTAGCGCAGCGCCCGGTGCACGGTGACTGTCCGCCCAACTCCAAGTACGACCTCAACC 240
                      ************************************************************

consensus_7725#0      AGAATCTGTGCGTTTACACCTGAGTGATGGGGCTGATCCTTCCCGGGCTTGTGTGTGTGT 289
consensus_7725#1      AGAATCTGAGCGTTTACACCTGAGTGATGGGGCTGATCCTTCCCGGGTTTGTGTGTGTGT 300
                      ******** ************************************** ************

consensus_7725#0      GTGTG--GAGAGCATGGTGTGATTGAATAAATTTACCTTTATACCCCGAAAAAAAAAAAA 347
consensus_7725#1      GTGTGTGGAGAGCATGGTGTGATTGAATAAATTTACCTTTATACCCCGAAACTC------ 354
                      *****  ********************************************         

consensus_7725#0      AAAAAAAAAAAAAAAAAAGGCCAAATGTGCCCGAGCTGGG 387
consensus_7725#1      ----------------------------------------