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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7746#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1031 fasta sequence
[CGACATCCAACAGCTGCCTGCGAACGGGTGAGAGTTTTGGTGCGTTGCTTGCAGGCATAGAATACGCGCCACTGTGTCCGCCGGGCGATGGGCTG-AATCAGGTTGATGTTGGTGTGTGGTGCATGAGGCTAGGATGGAGTTCTTCTTCTAAAATGTTTTAAACATTTTGCACAAATCTGACTAAAACCCCACTGTAACTTTATCTTCAATGCTGTCCAGTCCCAGTTTCATTCACCCCCGAAATCTCAAGTGCTTGTCCCGTTTTCTCATTATCACGTCTCCATCCCCAATGGTGGTGGTGGTGGGTTTGTCGCAACGGACGCGTGCCACAGGGAGGGTAGTAGTAGTCGGCCGTCGTGGTGGTGGTAGAGTGGCGCGAATTTAATTTATCACTTCGAGTGCGGCACCGCCACGCAAACAATGAGACCCCAAATTTTGAGTGATTCAGGCCGAGGGGTATGAGGAAGCTTGAGGAAGCACGGAGAAACGCGCTGCGATGAGAGTTCGCATTCTGTTTTACACGCGCGCTTCACTAACACCAATACAAATACCGTGCTTTGACGAGCCGTCTGTGAATGTGTGTGTGTCTTCTTTCAGCGAGCTCACCAACTTGGATCTGCTCGTCACATCGTGTTTTCTCGCTTACACTACAGCATCGAACCATCGCTCCGTATGTCCCCCCCCTCCTACGCGTACAACACCACCAGTACAGCGCGACGCTTTGCCGGAGATGGTTGTGCGTGTTTTGTTCAAAGTCCCGCGCGCAGTGTTTGTGCATTGATGCGCATTTCGTTATAAGTCTCGTGCGCCGGTGTGTTTTGGTGAAGTGTGCAGTGAATAAACAGTGTGCACAGACGCACATGCAGTGCATGCATCGACAAGTAAGAATTTGATGAACAGAG-GCAACGCAGATTG-TCGACAAGTTTCCCGCA-GCCTGGCTCGACCCGGTATGACGTCATTGGATTCTACATGTGTACTTTAGTGTGTACTTTTTGTTTCAATAAAGTGTGGAATGTAATAAAAAAAAAAAA]
[+] EMBL CNS08KSQ [CGACATCCAACAGCTGCCTGCGAACGGGTGAGAGTTTTGGTGCGTTGCTTGCAGGCATAGAATACGCGCCACTGTGTCCGCCGGGCGATGGGCTG AATCAGGTTGATGTTGGTGTGTGGTGCATGAGGCTAGGATGGAGTTCTTCTTCTAAAATGTTTTAAACATTTTGCACAAATCTGACTAAAACCCCACTGTAACTTTATCTTCAATGCTGTCCAGTCCCAGTTTCATTCACCCCCGAAATCTCAAGTGCTTGTCCCGTTTTCTCATTATCACGTCTCCATCCCCAATGGTGGTGGTGGTGGGTTTGTCGCAACGGACGCGTGCCACAGGGAGGGTAGTAGTAGTCGGCCGTCGTGGTGGTGGTAGAGTGGCGCGAATTTAATTTATCACTTCGAGTGCGGCACCGCCACGCAAACAATGAGACCCCAAATTTTGAGTGATTCAGGCCGAGGGGTATGAGGAAGCTTGAGGAAGCACGGAGAAACGCGCTGCGATGAGAGTTCGCATTCTGTTTTACACGCGCGCTTCACTAACACCAATACAAATACCGTGCTTTGACGAGCCGTCTGTGAATGTGTGTGTGTCTTCTTTCAGCGAGCTCACCAACTTGGATCTGCTCGTCACATCGTGTTGTCTCGCTTACACTACAGCATCGAACCATCGCTCCGTATGTCCCCCCCCTCCTACGCGTACAACACCACCAGTACAGCGCGACGCTTTGCCGGAGATGGTTGTGCGTGTTTTGTTCAAAGTCCCGCGCGCAGTGTTTGTGCATTGATGCGCATTTCGTTATAAGTCTCGTGCGCCGGTGTGTTTTGGTGAAGTGTGCAGTGAATAAACAGTGTGCACAGACGCACATGCAGTGCATGCATCGACAAGTAAGAATTTGATGAACAGAG GCAACGCAGATTGTTCGACA ]
[+] EMBL CNS09I62 [ CCTGCGAACGGGTGAGAGTTTTGGTGCGTTGCTTGCAGGCATAGAATACGCGCCACTGTGTCCGCCGGGCGATGGGCTGTAATCAGGTTGATGTTGGTGTGTGGTGCATGAGGCTAGGATGGAGTTCTTCTTCTAAAATGTTTTAAACATTTTGCACAAATCTGACTAAAACCCCACTGTAACTTTATCTTCAATGCTGTCCAGTCCCAGTTTCATTCACCCCCGAAATCTCAAGTGCTTGTC ]
[-] EMBL CNS08KSR [ taAATGCTGTCCAGTCCCAGTTTAATTCACCCCCGAATTCTCAAGTGCTTGTCCCGTTTTCTCATTATCACGTCTCCATCCCCAATGGTGGTGGTGGTGGGTTTGTCGCAACGGACGCGTGCAACAGGGAGGGTAGTAGTAGTCGGCCGTCGTGGTGGTGGTAAAGTGGCGCGAATTTAATTTATCACTTCGAGTGCGGCACCGCCACGCAAACAATGAGACCCCAAATTTTGAGTGATTCAGGCCGAGGGGTATGAGGAAGCTTGAGGAAGCACGGAGAAACGCGCTGCGATGAGAGTTCGCATTCTGTTTTAAACGCGCGCTTCACTAACACCAATACAAATACCGTGCTTTGACGAGCCGTCTGTGAATGTGTGTGTGTCTTCTTTCAGCGAGCTCACCAACTTGGATCTGCTCGTCACATCGTGTTTTCTCGCTTACACTACAGCATCGAACCATCGCTCCGTATGTCCCCCCCCTCCTACGCGTACAACACCACCAGTACAGCGCGACGCTTTGCCGGAGATGGTTGTGCGTGTTTTGTTCAAAGTCCCGCGCGCAGTGTTTGTGCATTGATGCGCATTTCGTTATAAGTCTCGTGCGCCGGTGTGTTTTGGTGAAGTGTGCAGTGAATAAACAGTGTGAACAGACGCACATGCAGTGCATGCATCGACAAGTAAGAATTTGATGAACAGAG GCAACGCAGATTG TCGACAAGTTTCCCGCA GCCTGGCTCGACCCGGTATGACGTCATTGGATTCTACATGTGTACTTTAGTGTGTACTTTTTGTTTCAATAAAGTGTGGAATGTAATAAAAAAAAAAAA]
[-] EMBL CNS09I63 [ GAAACGCGCTGCGATGAGAGTTCGCATTCTGTTTTACACGCGCGCTTCACTAACACCAATACAAATACCGTGCTTTGACGAGCCGTCTGTGAATGTGTGTGTGTCTTCTTTCAGCGAGCTCACCAACTTGGATCTGCTCGTCACATCGTGTTTTCTCGCTTACACTACAGAATCGAACCATCGCTCCGTATGTCCCCCCCCTCCTACGCGTACAACACCACCAGTACAGCGCGACGCTTTGCCGGAGATGGTTGTGCGTGTTTTGTTCAAAGTCCCGCGCGCAGTGTTTGTGCATTGATGCGCATTTCGTTATAAGTCTCGTGCGCCGGTGTGTTTTGGTGAAGTGTGCAGTGAATAAACAGTGTGCACAGACGCACATGCAGTGCATGCATCGACAAGTAAGAATTTGATGAAAAGAGAGCAACGCAGATTG TCGAAAAGTTTCCCGCATGCCTGGCT ]
[+] EMBL BX610790 [ TGTTTTGTTCAAAGTCCCGCGCGCAGTGTTTGTGCATTGATGCGCATTTCGTTATAAGTCTCGTTCGCCGGTGTGTTTTGGTGAAGTGTGCAGTGAATAAACAGTGTGCACAGACGCACATGCAGTGCATGCATCGACAAGTAAGAATTTGATGAACAGAG GCAACGCAGATTG TCGACAAGTTTCCCGCA GCCTGGCTCGACCCGGTATGACGTCATTGGATTCTACATGTGTA ]
[+] EMBL BX610791 [ AAGTCCCGCGCGCAGTGTTTGTGCATTGATGCGCATTTCGTTATAAGTCTCGTTCGCCGGTGTGTTTTGGTGAAGTGTGCAGTGAATAAACAGTGTGCACAGACGCACATGCAGTGCATGCATCGACAAGTAAGAATTTGATGAACA ]
[+] EMBL BX610789 [ CCGCGCGCAGTGTTTGTGCATTGATGCGCATTTCTTTATAAGTCTCGTTCGCCGGTGTGTTTTGGTGAAGTGTGCAGTGAATAAACAGTGTGCACAGACGCACATGCAGTGCATGCATCGACAAGTAAGAATTTGATGAACAGAG GCAACGCAGATTG TCGACAAGTTTCCCGCA GCCTGGCTCGACCCGGTATGACGTCATTGGATTCTACATGTGTACTTTAGTGTGTACTTTATGTTTCAATAAAGTGT ]
consensusID : consensus_7746#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 762 fasta sequence
[ATTGCCACTGTACGGTTTTCATATGCAGGTGAAAAGCAGTCTCGGGCCAGAGCAGTGCATATTCCCCAAAACCAAAGTGTGCCATTTTCCGGGTCAGGGGTCCAAAATTCGCCAACCAAACTAGTGCCACTATCCTGGGACGTAGCTTAGGTATCGAGTGATGCAACGTTGGGCGGAGTGCAGTAATCACACGCAGCGCCATTTGACCACAAAACTTGTGGCCTCACGCTAACGGAGCTCGGTGGTGCAAATTCCAATATGGCGGCCTGCTCGCTCCATTTGCTCGCTCACACGCTGGGAACCCATGGTCACCGAAATCGCCACCGCCGATCATCATCATCATCATCATCATCACTCTTCGCGGACCACTCAGCGCGCGCCCGAGGACCGCTCACCAATACCGATACACCAGTCCGAGAGCGATTTCAGCTCCGCTGTGGCATGGTGTGTGCGTGCCACGCAAACAATGAGACCCCAAATTTTGAGTGATTCAGGCCGAGGGGTATGAGGAAGCTTGAGGAAGCACGGAGAAACGCGCTGCGATGAGAGTTCGCATTCTGTTTTACACGCGCGCTTCACTAACACCAATACAAATACCGTGCTTTGACGAGCCGTCTGTGAATGTGTGTGTGTCTTCTTTCAGCGAGCTCACCAACTTGGATCTGCTCGTCACATCGTGTTGTCTCGCTTACACTACAGCATCGAANCATCGCTCCGTATGTCCCCCCCCTCCTACGCGTACNACACCACCAGTACAGCGCG]
[+] EMBL BX627149 [ATTGCCACTGTACGGTTTTCATATGCAGGTGAAAAGCAGTCTCGGGCCAGAGCAGTGCATATTCCCCAAAACCAAAGTGTGCCATTTTCCGGGTCAGGGGTCCAAAATTCGCCAACCAAACTAGTGCCACTATCCTGGGACGTAGCTTAGGTATCGAGTGATGCAACGTTGGGCGGAGTGCAGTAATCACACGCAGCGCCATTTGACCACAAAACTTGTGGCCTCACGCTAACGGAGCTCGGTGGTGCAAATTCCAATATGGCGGCCTGCTCGCTCCATTTGCTCGCTCACACGCTGGGAACCCATGGTCACCGAAATCGCCACCGCCGATCATCATCATCATCATCATCATCACTCTTCGCGGACCACTCAGCGCGCGCCCGAGGACCGCTCACCAATACCGATACACCAGTCCGAGAGCGATTTCAGCTCCGCTGTGGCATGGTGTGTGCGTGCCACGCAAACAATGAGACCCCAAATTTTGAGTGATTCAGGCCGAGGGGTATGAGGAAGCTTGAGGAAGCACGGAGAAACGCGCTGCGATGAGAGTTCGCATTCTGTTTTACACGCGCGCTTCACTAACACCAATACAAATACCGTGCTTTGACGAGCCGTCTGTGAATGTGTGTGTGTCTTCTTTCAGCGAGCTCACCAACTTGGATCTGCTCGTCACATCGTGTTGTCTCGCTTACACTACAGCATCGAANCATCGCTCCGTATGTCCCCCCCCTCCTACGCGTACNACACCACCAGTACAGCGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7746#0 ------------------CGACATCCAACAGCTGCCTGCGAACGGGTGAGAGTTTTGGTG 42
consensus_7746#1 ATTGCCACTGTACGGTTTTCATATGCAGGTGAAAAGCAGTCTCGGGCCAGAGCAGTG-CA 59
* ** ** * **** **** **
consensus_7746#0 CGTTGCTTGCAGGCATAGAATACGCGCCACTGTGTCCGCCGGGCGATGGGC-TGAATCAG 101
consensus_7746#1 TATTCCCCAAAACCAAAGTGTGCCATTTTCCGGGTCAGGGGTCCAAAATTCGCCAACCAA 119
** * * ** ** * * * * *** * * * * * ** **
consensus_7746#0 GTTGATGTTGGTGTGTGGTGCATGAGGCTAGG-ATGGAGTTCTTCTTC------TAAAAT 154
consensus_7746#1 ACTAGTGCCACTATCCTGGGACGTAGCTTAGGTATCGAGTGATGCAACGTTGGGCGGAGT 179
* ** * * * * ** **** ** **** * * * * *
consensus_7746#0 GTTTTAA--ACATTTTGCACAAATCTGACTAAAACCCCACTGTAACTTTATCTT--CAAT 210
consensus_7746#1 GCAGTAATCACACGCAGCGCCA-TTTGACCACAAAACT--TGTGGCCTCACGCTAACGGA 236
* *** *** ** * * * **** * ** * *** * * * * *
consensus_7746#0 GCTGTCCAGTCCCAGTTTCATT----CACCCCCGAAATCTCAAGTGCTTGTCC-CGTTTT 265
consensus_7746#1 GCTCGGTGGTGCAAATTCCAATATGGCGGCCTGCTCGCTCCATTTGCTCGCTCACACGCT 296
*** ** * * ** ** * * ** ** **** * * * *
consensus_7746#0 -----CTCATTATCAC----GTCTCCATCCCCAATGGTGGTGGTGGTGGGTTTGTCGCAA 316
consensus_7746#1 GGGAACCCATGGTCACCGAAATCGCCACCGCCGATCATCATCATCATCA--TCATCATCA 354
* *** **** ** *** * ** ** * * * * * ** *
consensus_7746#0 CGGA-CGCGTGCCACAGGGAGGGTAGTAGTAGTCGGCCGTCGTGGTGGTGGTAGAGTGGC 375
consensus_7746#1 CTCTTCGCGGACCACTCAGCGCGCGCCCGAGGACCGCTCAC-CAATACCGATACACCAGT 413
* **** **** * * * * * * ** * * * ** * *
consensus_7746#0 GCGAATTTAATTTATCACTTCGAGTGCGGCAC----------CGCCACGCAAACAATGAG 425
consensus_7746#1 CCGAGAGCGATTT--CAGCTCCGCTGTGGCATGGTGTGTGCGTGCCACGCAAACAATGAG 471
*** **** ** ** ** **** *****************
consensus_7746#0 ACCCCAAATTTTGAGTGATTCAGGCCGAGGGGTATGAGGAAGCTTGAGGAAGCACGGAGA 485
consensus_7746#1 ACCCCAAATTTTGAGTGATTCAGGCCGAGGGGTATGAGGAAGCTTGAGGAAGCACGGAGA 531
************************************************************
consensus_7746#0 AACGCGCTGCGATGAGAGTTCGCATTCTGTTTTACACGCGCGCTTCACTAACACCAATAC 545
consensus_7746#1 AACGCGCTGCGATGAGAGTTCGCATTCTGTTTTACACGCGCGCTTCACTAACACCAATAC 591
************************************************************
consensus_7746#0 AAATACCGTGCTTTGACGAGCCGTCTGTGAATGTGTGTGTGTCTTCTTTCAGCGAGCTCA 605
consensus_7746#1 AAATACCGTGCTTTGACGAGCCGTCTGTGAATGTGTGTGTGTCTTCTTTCAGCGAGCTCA 651
************************************************************
consensus_7746#0 CCAACTTGGATCTGCTCGTCACATCGTGTTTTCTCGCTTACACTACAGCATCGAACCATC 665
consensus_7746#1 CCAACTTGGATCTGCTCGTCACATCGTGTTGTCTCGCTTACACTACAGCATCGAANCATC 711
****************************** ************************ ****
consensus_7746#0 GCTCCGTATGTCCCCCCCCTCCTACGCGTACAACACCACCAGTACAGCGCGACGCTTTGC 725
consensus_7746#1 GCTCCGTATGTCCCCCCCCTCCTACGCGTACNACACCACCAGTACAGCGCG--------- 762
******************************* *******************
consensus_7746#0 CGGAGATGGTTGTGCGTGTTTTGTTCAAAGTCCCGCGCGCAGTGTTTGTGCATTGATGCG 785
consensus_7746#1 ------------------------------------------------------------
consensus_7746#0 CATTTCGTTATAAGTCTCGTGCGCCGGTGTGTTTTGGTGAAGTGTGCAGTGAATAAACAG 845
consensus_7746#1 ------------------------------------------------------------
consensus_7746#0 TGTGCACAGACGCACATGCAGTGCATGCATCGACAAGTAAGAATTTGATGAACAGAGGCA 905
consensus_7746#1 ------------------------------------------------------------
consensus_7746#0 ACGCAGATTGTCGACAAGTTTCCCGCAGCCTGGCTCGACCCGGTATGACGTCATTGGATT 965
consensus_7746#1 ------------------------------------------------------------
consensus_7746#0 CTACATGTGTACTTTAGTGTGTACTTTTTGTTTCAATAAAGTGTGGAATGTAATAAAAAA 1025
consensus_7746#1 ------------------------------------------------------------
consensus_7746#0 AAAAAA 1031
consensus_7746#1 ------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||