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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7757#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1049 fasta sequence
[CAGGCCAGAATCGCCACGAGGNTAAAAAGTGTAATACGGACGTTTCCTTCCGAAAAAAAGAGTATCACCAAGTGTGTTGCAATCAAGATTCAA-TGCTAA-AACTGTCCCCGGGTAGGCGTGGAA-TCGGGCCACGTCGGAGATAAGCCGTGGAGAAGTAGTAGCACATTATTCTGCGGGCGATAAGAAAGCAGACCACAACATCTATACGCATACATTGCACGGGTCAGGAGGCAGAAGGGTGACGAAAGTAGACGACAGTGAAAGCATCCGCCCGCCTTGGTGTCACTGGCATCGAGAGACGGAAAGGCAAGCAAACACCAACACCACCACTCATCACCGCTGTCGTCGTGTGGCAAAACTGTCCCGGACGGGGTGTGATCCGTCGACGGCGGAACGTCCGGCACCATGTACTGCCTGCAGTGTCTCATCCCGGTGCTGCTGATTCCCAAGCCAACGAACCCGGCCCTGATGCAGACGCATGTGATGTTTATCGTGCTCTATCTGATCGGCTTCTTTCTCGAGCGCAAACCGTGCACCATCTGCAGCCTGGTGTTTCTGATGGCCGTGTTCCTGATCTGCAACAGTGGCGTCGGCAACTGCTTGTTCTGGGGCAATTGTGAGGGCCACACGTGCGATAACGGCTAATCGAACCGGACGCGAACAGATCGAAGACGCGTGAGCTGATGCGCTGGTAGGGCAGTGGTTACTTCCTTGTTTACTACTTTGATTTTAAACACTTTCTATCCTGATTTATCTCTCCATTTCCACCGTTTTCTATCCAAAAATGGCCAAAGATTTAGACAAATCCGTGTTAATTGTGAGGGTGCACGGGGAGTTGAAAGCGAAGCGAGACAGAAACCTTCAGTTTAGAGCGCTAGCACCATGTTTAGGTAAAATAATTGTTTTTTTTTTCGTTTTAGAAGTTGAGTTTGAAATTGTTTAGAAAAAAATTTGCCTTACGATTGGATGTAGGTTTCGTTGTTTCACTCGTGTCGGGTTGATANGTAGTTTTCGTTTTTTTGTTTGTTTCGAGAACACAAAGACTGCAG]
[+] EMBL BX466632 [CAGGCCAGAATCGCCACGAGGNTAAAAAGTGTAATACGGACGTTTCCTTCCGAAAAAAAGAGTATCACCAAGTGTGTTGCAATCAAGATTCAACTGCTAAGAACTGTCCCCGGGTAGGCGTGGAAGTCGGGCCACGTCGGAGATAAGCCGTGGAGAAGTAGTAGCACATTATTCT ]
[+] EMBL BM626387 [ ccgCTTCCGAAAAAAAGAGTATCACCAAGTGTGTTGCAATCAAGATTCAA TGCTAA AACTGTCCCCGGGTAGGCGTGGAA TCGGGCCACGTCGGAGATAAGCCGTGGAGAAGTAGTAGCACATTATTCTGCGGGCGATAAGAAAGCAGACCACAACATCTATACGCATACATTGCACGGGTCAGGAGGCAGAAGGGTGACGAAAGTAGACGACAGTGAAAGCATCCGCCCGCCTTGGTGTCACTGGCATCGAGAGACGGAAAGGCAAGCAAACACCAACACCACCACTCATCACCGCTGTCGTCGTGTGGCAAAACTGTCCCGGACGGGGTGTGATCCGTCGACGGCGGAACGTCCGGCACCATGTACTGCCTGCAGTGTCTCATCCCGGTGCTGCTGATTCCCAAGCCAACGAACCCGGCCCTGATGCAGACGCATGTGATGTTTATCGTGCTCTATCTGATCGGCTTCTTTCTCGAGCGCAAACCGTGCACCATCTGCAGCCTGGTGTTTCTGATGGCCGTGTTCCTGATCTGCAACAGTGGCGTCGGCAACTGCCTGTTCTGGGGCAACTGCGAGGGCCACACGTGC ]
[+] EMBL BM580077 [ CCGGGTAGGCGTGGAA TCGGGCCACGTCGGAGATAAGCCGTGGAGAAGTAGTAGCACATTATTCTGCGGGCGATAATAAAGCAGACCACAACATCTATACGCATACATTGCACGGGTCAGGAGGCAGAAGGGTGACGAAAGTAGACGACAGTGAAAGCATCCGCCCGCCTTGGTGTCACTGGCATCTAGAGACGGAAAGGCAAGCAAACACCAACACCACCACTCATCACCGCTGTCGTCGTGTGGCAAAACTGTCCCGGACGGGGTGTGATCCGTCGACGGCGGAACGTCCGGCACCATGTACTGCCTGCAGTGTCTCATCCCGGTGCTGCTGATTCCCAAGCCAACGAACCCGGCCCTGATGCAGACGCATGTGATGTTTATCGTGCTCTATCTGATCGGCTTCTTTCTCGAGCGCAAACCGTGCACCATCTGCA ]
[+] EMBL BX624013 [ GCAAAAGGGTGACAAAAGCAGACGACAGTGAAAGCATCCGCCCGCCTTGGTGTCACTGGCATCGAGAGACGGAAAGGNAAGAAAACACCAACACCACCACTCATCACCGCTGNCGTCGTGTGGCAAAACTGTCCCGGACGGGGTGTGATCCGCCGACGGCGGGACGTCCGGCACCATGTACTGCCTGCAGTGTCTCATCCCGGTGCTGCTGATTCCCAAGCCGACGAACCCGGCCCTGATGCANACGCATGTGATGTTTATCGTGCTCTATCTGATCGGCTTCTTTCTCGAGCGCAAACCGTGCACCATCTGCAGCCTGGTGTTTCTGATGGCCGTGTTCCTGATCTGCAACAGTGGCGTCGGCAACTGCTTGTTCTGGGGCAATTGTGAGGGCCACACGTGCGATAACGGCTAATCGAACCGGACG ]
[+] EMBL BX620338 [ TGGCATCGAGAGACGGAAAGGCAAGAAAACACCAACACCACCACTCATCACCGCTGTCGTCGTGTGGCAAAACTGTCCCGGACGGGGTGTGATCCGCCGACGGCGGGACGTCCGGCACCATGTACTGCCTGCAGTGTCTCATCCCGGTGCTGCTGATTCCCAAGCCGACGAACCCGGCCCTGATGCAGACGCATGTGATGTTTATCGTGCTCTATCTGATCGGCTTCTTTCTCGAGCGCAAACCGTGCACCATCTGCAGCCTGGTGTTTCTGATGGCCGTGTTCCTGATCTGCAACAGTGGCGTCGGCAACTGCTTGTTCTGGGGCAATTGTGAGGGCCACACGTGCGATAACGGCTAATCGAACCGGACGCGAACAGATCGAAGACGCGTGAGCTGATGCGCTGGTAGGGCAGTGGTTACTTCCTTGTTTACTACTTTGATTTTAAACACTTTCTATCCTGATTTATCTCTCCATTTCCACCGTTTTCTATCCAAAAATGGCCAAAGATTTAGACAAATCCGTGTTAATTGTGAGGGTGCACGGGGAGTTGAAAGCGAAGCGAGACAGAAACCTTCAGTTTAGAGCGCTAGC ]
[+] EMBL BX626666 [ GATGTTTATCGTGCTCTATCTGATCGGCTTCTTTCTCGAGCGCAAACCGTGCACCATCTGCAGCCTGGTGTTTCTGATGGCCGTGTTCCTGATCTGCAACAGTGGCGTCGGCAACTGCTTGTTCTGGGGCAATTGTGAGGGCCACACGTGCGATAACGGCTAATCGAACCGGACGCGAACAGATCGAAGACGCGTGAGCTGATGCGCTGGTAGGGCAGTGGTTACTTCCTTGTTTACTACTTTGATTTTAAACACTTTCTATCCTGATTTATCTCTCCATTTCCACCGTTTTCTATCCAAAAATGGCCAAAGATTTAGACAAATCCGTGTTAATTGTGAGGGTGCACGGGGAGTTGAAAGCGAAGCGAGACAGAAACCTTCAGTTTAGAGCGCTAGCACCATGTTTAGGTAAAATAATTGTTTTTTTTTTCGTTTTAGAAGTTGAGTTTGAAATTGTTTAGAAAAAAATTTGCCTTACGATTGGATGTAGGTTTCGTTGTTTCACTCGTGTCGGGTTGATANGTAGTTTTCGTTTTTTTGTTTGTTTCGAGAACACAAAGACTGCAG]
consensusID : consensus_7757#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 400 fasta sequence
[CCGCCATTTCCACCGTTTTCTATCCAAAAATGGCCAAAGATTTAGACAAATGCGTGTTAATTGTGAGGGTGAGATGAAAGCGAAGCCAGACAGAAACCTTCGATTAATTGCGCCAGCACCATGTTTAGGTAAAATAATTCTGTTTTTTTTTTTCGTTTTAGAAGTTGAGTTTGGAATTGTTTAGAAACAAAAAATTTGCCTTACGATTGGATGTAGGTTTCGTTGTTTCACTCGTGTCGGGTTTATAGGTAGGTTGTTTGTTTTTTGTTTGTTTCGAGAACACAAAGACTGCAGGACGCAGATCAATCTTAAACGCAAAGGCGGTTGTGCTGTAAACGAGAGATATGATAAACTAGCTTGAAGCGTGCGTGCAGACGAGCGCAGCATAAACATAAACATT]
[+] EMBL BM602102 [CCGCCATTTCCACCGTTTTCTATCCAAAAATGGCCAAAGATTTAGACAAATGCGTGTTAATTGTGAGGGTGAGATGAAAGCGAAGCCAGACAGAAACCTTCGATTAATTGCGCCAGCACCATGTTTAGGTAAAATAATTCTGTTTTTTTTTTTCGTTTTAGAAGTTGAGTTTGGAATTGTTTAGAAACAAAAAATTTGCCTTACGATTGGATGTAGGTTTCGTTGTTTCACTCGTGTCGGGTTTATAGGTAGGTTGTTTGTTTTTTGTTTGTTTCGAGAACACAAAGACTGCAGGACGCAGATCAATCTTAAACGCAAAGGCGGTTGTGCTGTAAACGAGAGATATGATAAACTAGCTTGAAGCGTGCGTGCAGACGAGCGCAGCATAAACATAAACATT]
consensusID : consensus_7757#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence
[TTGTGAGGGTGAGATGAAAGCGAAGCCAGACAGAAACCTTCGATTAATTGCGCCAGCACCATGTTTAGGTAAAATAATTCTGTTTTTTTTTTTCGTTTTAGAAGTTGAGTTTGGAATTGTTTAGAAACAAAAAATTTGCCTTACGATTGGATGTAGGTTTCGTTGTTTCACTCGTGTCGGGTTTATAGGTAGGTTGTTTGTTTTTTGTTTGTTTCGAGAACACAAAGACTGCAGGACGCAGATCAATCTTAAACGCAAAGGCGGTTGTGCTGTAAACGAGAGATATGATAAAATAATTCTGTTTTTTTTTTTCGTTTTAGAAGTTGAGTTTGGAATTGTTTAGAAACAAAAAATTTGCCTTACGATTGGATGTAGGTTTCGTTGTTTCACTCGTGTCGG]
[+] EMBL BX623748 [TTGTGAGGGTGAGATGAAAGCGAAGCCAGACAGAAACCTTCGATTAATTGCGCCAGCACCATGTTTAGGTAAAATAATTCTGTTTTTTTTTTTCGTTTTAGAAGTTGAGTTTGGAATTGTTTAGAAACAAAAAATTTGCCTTACGATTGGATGTAGGTTTCGTTGTTTCACTCGTGTCGGGTTTATAGGTAGGTTGTTTGTTTTTTGTTTGTTTCGAGAACACAAAGACTGCAGGACGCAGATCAATCTTAAACGCAAAGGCGGTTGTGCTGTAAACGAGAGATATGATAAAATAATTCTGTTTTTTTTTTTCGTTTTAGAAGTTGAGTTTGGAATTGTTTAGAAACAAAAAATTTGCCTTACGATTGGATGTAGGTTTCGTTGTTTCACTCGTGTCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7757#1 ------------------------------------------------------------
consensus_7757#2 ------------------------------------------------------------
consensus_7757#0 CAGGCCAGAATCGCCACGAGGNTAAAAAGTGTAATACGGACGTTTCCTTCCGAAAAAAAG 60
consensus_7757#1 ------------------------------------------------------------
consensus_7757#2 ------------------------------------------------------------
consensus_7757#0 AGTATCACCAAGTGTGTTGCAATCAAGATTCAATGCTAAAACTGTCCCCGGGTAGGCGTG 120
consensus_7757#1 ------------------------------------------------------------
consensus_7757#2 ------------------------------------------------------------
consensus_7757#0 GAATCGGGCCACGTCGGAGATAAGCCGTGGAGAAGTAGTAGCACATTATTCTGCGGGCGA 180
consensus_7757#1 ------------------------------------------------------------
consensus_7757#2 ------------------------------------------------------------
consensus_7757#0 TAAGAAAGCAGACCACAACATCTATACGCATACATTGCACGGGTCAGGAGGCAGAAGGGT 240
consensus_7757#1 ------------------------------------------------------------
consensus_7757#2 ------------------------------------------------------------
consensus_7757#0 GACGAAAGTAGACGACAGTGAAAGCATCCGCCCGCCTTGGTGTCACTGGCATCGAGAGAC 300
consensus_7757#1 ------------------------------------------------------------
consensus_7757#2 ------------------------------------------------------------
consensus_7757#0 GGAAAGGCAAGCAAACACCAACACCACCACTCATCACCGCTGTCGTCGTGTGGCAAAACT 360
consensus_7757#1 ------------------------------------------------------------
consensus_7757#2 ------------------------------------------------------------
consensus_7757#0 GTCCCGGACGGGGTGTGATCCGTCGACGGCGGAACGTCCGGCACCATGTACTGCCTGCAG 420
consensus_7757#1 ------------------------------------------------------------
consensus_7757#2 ------------------------------------------------------------
consensus_7757#0 TGTCTCATCCCGGTGCTGCTGATTCCCAAGCCAACGAACCCGGCCCTGATGCAGACGCAT 480
consensus_7757#1 ------------------------------------------------------------
consensus_7757#2 ------------------------------------------------------------
consensus_7757#0 GTGATGTTTATCGTGCTCTATCTGATCGGCTTCTTTCTCGAGCGCAAACCGTGCACCATC 540
consensus_7757#1 ------------------------------------------------------------
consensus_7757#2 ------------------------------------------------------------
consensus_7757#0 TGCAGCCTGGTGTTTCTGATGGCCGTGTTCCTGATCTGCAACAGTGGCGTCGGCAACTGC 600
consensus_7757#1 ------------------------------------------------------------
consensus_7757#2 ------------------------------------------------------------
consensus_7757#0 TTGTTCTGGGGCAATTGTGAGGGCCACACGTGCGATAACGGCTAATCGAACCGGACGCGA 660
consensus_7757#1 ------------------------------------------------------------
consensus_7757#2 ------------------------------------------------------------
consensus_7757#0 ACAGATCGAAGACGCGTGAGCTGATGCGCTGGTAGGGCAGTGGTTACTTCCTTGTTTACT 720
consensus_7757#1 -----------------------------------CCGCCATTTCCACCGTTTTCTATCC 25
consensus_7757#2 ------------------------------------------------------------
consensus_7757#0 ACTTTGATTTTAAACACTTTCTATCCTGATTTATCTCTCCATTTCCACCGTTTTCTATCC 780
consensus_7757#1 AAAAATGGCCAAAGATTTAGACAAATGCGTGTTAATTGTGAGGGTG-------AGATGAA 78
consensus_7757#2 -----------------------------------TTGTGAGGGTG-------AGATGAA 18
consensus_7757#0 AAAAATGGCCAAAGATTTAGACAAATCCGTGTTAATTGTGAGGGTGCACGGGGAGTTGAA 840
*********** ** ****
consensus_7757#1 AGCGAAGCCAGACAGAAACCTTCGATTAATTGCGCCAGCACCATGTTTAGGTAAAATAAT 138
consensus_7757#2 AGCGAAGCCAGACAGAAACCTTCGATTAATTGCGCCAGCACCATGTTTAGGTAAAATAAT 78
consensus_7757#0 AGCGAAGCGAGACAGAAACCTTCAGTTTAGAGCGCTAGCACCATGTTTAGGTAAAATAAT 900
******** ************** ** * **** ************************
consensus_7757#1 TCTGTTTTTTTTTTTCGTTTTAGAAGTTGAGTTTGGAATTGTTTAGAAACAAAAAATTTG 198
consensus_7757#2 TCTGTTTTTTTTTTTCGTTTTAGAAGTTGAGTTTGGAATTGTTTAGAAACAAAAAATTTG 138
consensus_7757#0 T---GTTTTTTTTTTCGTTTTAGAAGTTGAGTTTGAAATTGTTTAGA---AAAAAATTTG 954
* ****************************** *********** **********
consensus_7757#1 CCTTACGATTGGATGTAGGTTTCGTTGTTTCACTCGTGTCGGGTTTATAGGTAGGTTGTT 258
consensus_7757#2 CCTTACGATTGGATGTAGGTTTCGTTGTTTCACTCGTGTCGGGTTTATAGGTAGGTTGTT 198
consensus_7757#0 CCTTACGATTGGATGTAGGTTTCGTTGTTTCACTCGTGTCGGGTTGATANGTAG-TTTTC 1013
********************************************* *** **** ** *
consensus_7757#1 TGTTTTTTGTTTGTTTCGAGAACACAAAGACTGCAGGACGCAGATCAATCTTAAACGCAA 318
consensus_7757#2 TGTTTTTTGTTTGTTTCGAGAACACAAAGACTGCAGGACGCAGATCAATCTTAAACGCAA 258
consensus_7757#0 GTTTTTTTGTTTGTTTCGAGAACACAAAGACTGCAG------------------------ 1049
**********************************
consensus_7757#1 AGGCGGTTGTGCTGTAAACGAGAGATATGATAAACTAGCTTGAA---------GCGTGCG 369
consensus_7757#2 AGGCGGTTGTGCTGTAAACGAGAGATATGATAAAATAATTCTGTTTTTTTTTTTCGTTTT 318
consensus_7757#0 ------------------------------------------------------------
consensus_7757#1 TGCAGACGAGCGCAGCAT-------AAACATAAACATT---------------------- 400
consensus_7757#2 AGAAGTTGAGTTTGGAATTGTTTAGAAACAAAAAATTTGCCTTACGATTGGATGTAGGTT 378
consensus_7757#0 ------------------------------------------------------------
consensus_7757#1 ---------------------
consensus_7757#2 TCGTTGTTTCACTCGTGTCGG 399
consensus_7757#0 ---------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||