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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7761#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 797 fasta sequence
[CCGTTCTATTGACGTGTCGGTAGAAAATTGCTTCGTTTCTCGATTTTTTTTTGTTGGTAAAATTGGTATTCTACATTGCTGGCTTCTATCGTGGTTAAAATGTTTAACCCTTCGTTATTTGTGGTGTTAGCCACGCTGCTCATTGTTCCTCTCTCGAATGGATTGTACTTTCACATCGGTGAAACCGAACGCAAATGTTTCATCGAAGAAATACCGGATGAAACCACCGTAGTAGCTAACTACAAGGTGGAACTGTATGATCCACGGTCCGGTGGATTCATGCCATCATCGCCCGGTATTGGAATGCACGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACA-GCTCCGAAGGACGTATTTCGTTCACATCCCATATACCTGGAGAACACGTGCTGTGTATGTACTCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGATATTCAGGTCGGAGAGCACACGATCGATTACGCTAATGTGGCACAGAAGGAAAAGCTAACCGAATTGCAGCTGCGCATTCGTCAACTCCTCGACCAGGTGGACCAAATCACAAAGGAGCAGAACTACCAGAGATACCGTGAAGAACGCTTCCGACAAACCAGCGACAGTACCAACCAGCGTGTCTTGTGGTGGTCGGTTGCTCAAACCGTAGTGCTGCTGATAATGGGCGTGTGGCAGATGAGGCATCTCAAGAGCTTCTTCGAAGCAAAGAAACTAGTTTAAACGAACGAATATCGTACGACAAGGTATGTCACAATCTTTTTGTG]
[+] EMBL BM650065 [CCGTTCTATTGACGTGTCGGTAGAAAATTGCTTCGTTTCTCGATTTTTTTTTGTTGGTAAAATTGGTATTCTACATTGCTGGCTTCTATCGTGGTTAAAATGTTTAACCCTTCGTTATTTGTGGTGTTAGCCACGCTGCTCATTGTTCCTCTCTCGAATGGATTGTACTTTCACATCGGTGAAACCGAACGCAAATGTTTCATCGAAGAAATACCGGATGAAACCACCGTAGTAGCTAACTACAAGGTGGAACTGTATGATCCACGGTCCGGTGGATTCATGCCATCATCGCCCGGTATTGGAATGCACGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACA GCTCCGAAGGACGTATTTCGTTCACATCCCATATACCTGGAGAACACGTGCTGTGTATGTACTCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGATATTCAGGTCGGAGAGCACACGATCGATTACGCTAATGTGGCACAGAAGGAAAAGCTAACCGAATTGCAGCTGCGCATTCGTCAACTCCTCGACCAGGTGGACCAAATCACAAAGGAGCAGAACTACCAGAGATACCGTGAAGAACGCTTCCGACAAACCAGCGACAGTACCAACCAGCGTGTCTTGTGGTGGTCGGTTGCTCAAACCGTA ]
[+] EMBL BM634475 [ ccgGAAAATTGCTTCGTTTCTCGATTTTTTTTTGTTGGTAAAATTGGTATTCTACATTGCTGGCTTCTATCGTGGTTAAAATGTTTAACCCTTCGTTATTTGTGGTGTTAGCCACGCTGCTCATTGTTCCTCTCTCGAATGGATTGTACTTTCACATCGGTGAAACCGAACGCAAATGTTTCATCGAAGAAATACCGGATGAAACCACCGTAGTAGCTAACTACAAGGTGGAACTGTATGATCCACGGTCCGGTGGATTCATGCCATCATCGCCCGGTATTGGAATGCACGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACA GCTCCGAAGGACGTATTTCGTTCACATCCCATATACCTGGAGAACACGTGCTGTGTATGTACTCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGATATTCAGGTCGGAG ]
[+] EMBL BM606353 [ cCGTTTCTCGA TTTTTTTGTTGGTAAAATTGGTATTCTACATTGCTGGCTTCTATCGTGCTTAAAATGTTTAACCCTGCGTTATTTGTGGTGTTAGCCACGCTGCTCATTGTTCCTCTCTCGAATGGATTGTACTTTCACATCGGTGAAACCGAACGCAAATGTTTCATCGAAGAAATACCGGATGAAACCACCGTAGTAGCTAACTACAAGGTGGAACTGTATGATCCACGGTCCGGTGGATTCATGCCATCATCGCCCGGTATTGGAATGCACGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACAGGCTCCGAAGGACGTATTTCGTTCACCTCCCATATACCGGGAGAACACGTGCTGTGTATGTACTCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGA ]
[+] EMBL BM606340 [ cCGTTTCTCGA TTTTTTTGTTGGTAAAATTGGTATTCTACATTGCTGGCTTCTATCGTGCTTAAAATGTTTAACCCTGCGTTATTTGTGGTGTTAGCCACGCTGCTCATTGTTCCTCTCTCGAATGGATTGTACTTTCACATCGGTGAAACCGAACGCAAATGTTTCATCGAAGAAATACCGGATGAAACCACCGTAGTAGCTAACTACAAGGTGGAACTGTATGATCCACGGTCCGGTGGATTCATGCCATCATCGCCCGGTATTGGAATGCACGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACA GCTCCGAAGGACGTATTTCGTTCACCTCCCATATACCGGGAGAACACGTGCTGTGTATGTACTCGAA ]
[+] EMBL BM578952 [ ccgAAAATTGGTATTCTACATTGCTGGCTTCTATCGTGGTTAAAATGTTTAACCCTTCGTTATTTGTGGTGTTAGCCACGCTGCTCATTGTTCCTCTCTCGAATGGATTGTACTTTCACATCGGTGAAACCGAACGCAAATGTTTCATCGAAGAAATACCGGATGAAACCACCGTAGTAGCTAACTACAAGGTGGAACTGTATGATCCACGGTCCGGTGGATTCATGCCATCATCGCCCGGTATTGGAATGCACGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACA GCTCCGAAGGACGTATTTCGTTCACATCCCATATACCTGGAGAACACGTGCTGTGTATGTACTCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGATATTCAGGTCGGAGAGCACACGATCGATTACGCTAATGTGGCACAGAAGGAAAAGCTAACCGAATTGCAGCTGCGCATTCGTCAACTCCTCGACCAGGTGGACCAAATCACAAAGGAGCAGAACTACCAGAGATACCGTGAAGAACGCTTCCGACAAACCAGCGACAGTACCAACCAGCGTGTCTTGTGGTGGTCGGTTGCTCAAACCGT ]
[+] EMBL BM602264 [ ccgGGTGTTAGCCACGCTGCTCATTGTTCCTCTCTCGAATGGATTGTACTTTCACATCGGTGAAACCGAACGCAAATGTTTCATCGAAGAAATACCGGATGAAACCACCGTAGTAGCTAACTACAAGGTGGAACTGTATGATCCACGGTCCGGTGGATTCATGCCATCATCGCCCGGTATTGGAATGCACGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACA GCTCCGAAGGACGTATTTCGTTCACATCCCATATACCTGGAGAACACGTGCTGTGTATGTACTCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGATATTCAGGTCGGAGAGCACACGATCGATTACGCTAATGTGGCACAGAAGGAAAAGCTAACCGAATTGCAGCTGCGCATTCGTCAACTCCTCGACCAGGTGGACCAAATCACAAAGGAGCAGAACTACCAGAGATACCGTGAAGAACGCTTCCGACAAACCAGCGACAGTACCAACCAGCGTGTCTTGTGGTGGTCGGTTGCTCAAACCGTAGTGCTGCTGATAATGGGCGTGTGGCAGATGAGGCATCTCAAGAGCTTCTTCGAAGCAAAGAAACTAGTTTAAACGAACGAATATCGTACGACAAGGTATGTCACAATCTTTTTGTG]
consensusID : consensus_7761#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGAAATGTTTAACCCTTCGTTATTTGTGGTGTTAGCCACGCTGCTCATTGTTCCTCTCTCGAATGGATTGTACTTTCACATCGGTGAAACCGAACGCAAATGTTTCATCGAAGAAATACCGGATGAAACCACCGTAGTAGCTAACTACAAGGTGGAACTGTATGATCCACGGTCCGGTGGATTCATGCCATCATCGCCCGGTATTGGAATGCACGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACAGCTCCGAAGGACGTATTTCGTTCACATCCCATATACCTGGAGAACACGTGCTGTGTATGTACTCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGATATTCAGGTCGGAGAGCACACGATCGATTACGCTAATGTGGCACAGAAGGAAAAGCTAACCGAATTGCAGCTGCGCATTCGTCAACTCCTCGACCAGGTGGACCAAATCACAAAGGAGCAGAACTACCAGAGATACCGTGAAGAACGCTTCCGACAAACCAGCGACAGTACCAACCAGCGTGTCTTGTGGTGGTCGGTTGCTCAAACCGTAGTGCTGCTGATAATGGGCGTGTGGCAGATGAGGCATCTCAAGAGCTTCT]
[+] EMBL BM644146 [CCGCCCACGCGTCCGCCCACGCGTCCGAAATGTTTAACCCTTCGTTATTTGTGGTGTTAGCCACGCTGCTCATTGTTCCTCTCTCGAATGGATTGTACTTTCACATCGGTGAAACCGAACGCAAATGTTTCATCGAAGAAATACCGGATGAAACCACCGTAGTAGCTAACTACAAGGTGGAACTGTATGATCCACGGTCCGGTGGATTCATGCCATCATCGCCCGGTATTGGAATGCACGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACAGCTCCGAAGGACGTATTTCGTTCACATCCCATATACCTGGAGAACACGTGCTGTGTATGTACTCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGATATTCAGGTCGGAGAGCACACGATCGATTACGCTAATGTGGCACAGAAGGAAAAGCTAACCGAATTGCAGCTGCGCATTCGTCAACTCCTCGACCAGGTGGACCAAATCACAAAGGAGCAGAACTACCAGAGATACCGTGAAGAACGCTTCCGACAAACCAGCGACAGTACCAACCAGCGTGTCTTGTGGTGGTCGGTTGCTCAAACCGTAGTGCTGCTGATAATGGGCGTGTGGCAGATGAGGCATCTCAAGAGCTTCT]
consensusID : consensus_7761#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence
[CCGCGGACGCGTGGGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACAGCTCCGAAGGACGTATTTCGTTCACATCCCATATACCTGGAGAACACGTGCTGTGTATGTACTCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGATATTCAGGTCGGAGAGCACACGATCGATTACGCTAATGTGGCACAGAAGGAAAAGCTAACCGAATTGCAGCTGCGCATTCGTCAACTCCTCGACCAGGTGGACCAAATCACAAAGGAGCAGAACTACCAGAGATACCGTGAAGAACGCTTCCGACAAACCAGCGACAGTACCAACCAGCGTGTCTTGTGGTGGTCGGTTGCTCAAACCGTAGTGCTGCTGATAATGGGCGTGTGGCAGATGAGGCATCTCAAGAGCTTCTTCGAAGCAAAGAAACTAGTTTAAACGAACGAATATCGTACGACAAGGTATGTCACAATCTTTTTGTGAAAATAAATTAAAACAACATTG]
[+] EMBL BM610681 [CCGCGGACGCGTGGGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACAGCTCCGAAGGACGTATTTCGTTCACATCCCATATACCTGGAGAACACGTGCTGTGTATGTACTCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGATATTCAGGTCGGAGAGCACACGATCGATTACGCTAATGTGGCACAGAAGGAAAAGCTAACCGAATTGCAGCTGCGCATTCGTCAACTCCTCGACCAGGTGGACCAAATCACAAAGGAGCAGAACTACCAGAGATACCGTGAAGAACGCTTCCGACAAACCAGCGACAGTACCAACCAGCGTGTCTTGTGGTGGTCGGTTGCTCAAACCGTAGTGCTGCTGATAATGGGCGTGTGGCAGATGAGGCATCTCAAGAGCTTCTTCGAAGCAAAGAAACTAGTTTAAACGAACGAATATCGTACGACAAGGTATGTCACAATCTTTTTGTGAAAATAAATTAAAACAACATTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7761#0 CCGTTCTATTGACGTGTCGGTAGAAAATTGCTTCGTTTCTCGATTTTTTTTTGTTGGTAA 60
consensus_7761#1 ------------------------------------------------------------
consensus_7761#2 ------------------------------------------------------------
consensus_7761#0 AATTGGTATTCTACATTGCTGGCTTCTATCGTGGTTAAAATGTTTAACCCTTCGTTATTT 120
consensus_7761#1 ----------CCGCCCACGCGTCCGCCCACGCGTCCGAAATGTTTAACCCTTCGTTATTT 50
consensus_7761#2 ------------------------------------------------------------
consensus_7761#0 GTGGTGTTAGCCACGCTGCTCATTGTTCCTCTCTCGAATGGATTGTACTTTCACATCGGT 180
consensus_7761#1 GTGGTGTTAGCCACGCTGCTCATTGTTCCTCTCTCGAATGGATTGTACTTTCACATCGGT 110
consensus_7761#2 ------------------------------------------------------------
consensus_7761#0 GAAACCGAACGCAAATGTTTCATCGAAGAAATACCGGATGAAACCACCGTAGTAGCTAAC 240
consensus_7761#1 GAAACCGAACGCAAATGTTTCATCGAAGAAATACCGGATGAAACCACCGTAGTAGCTAAC 170
consensus_7761#2 ------------------------------------------------------------
consensus_7761#0 TACAAGGTGGAACTGTATGATCCACGGTCCGGTGGATTCATGCCATCATCGCCCGGTATT 300
consensus_7761#1 TACAAGGTGGAACTGTATGATCCACGGTCCGGTGGATTCATGCCATCATCGCCCGGTATT 230
consensus_7761#2 -------------------------------------------------------CCGCG 5
consensus_7761#0 GGAATGCACGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACAGC 360
consensus_7761#1 GGAATGCACGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACAGC 290
consensus_7761#2 GACGCGTGGGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACAGC 65
* * ***************************************************
consensus_7761#0 TCCGAAGGACGTATTTCGTTCACATCCCATATACCTGGAGAACACGTGCTGTGTATGTAC 420
consensus_7761#1 TCCGAAGGACGTATTTCGTTCACATCCCATATACCTGGAGAACACGTGCTGTGTATGTAC 350
consensus_7761#2 TCCGAAGGACGTATTTCGTTCACATCCCATATACCTGGAGAACACGTGCTGTGTATGTAC 125
************************************************************
consensus_7761#0 TCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGATATTCAGGTC 480
consensus_7761#1 TCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGATATTCAGGTC 410
consensus_7761#2 TCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGATATTCAGGTC 185
************************************************************
consensus_7761#0 GGAGAGCACACGATCGATTACGCTAATGTGGCACAGAAGGAAAAGCTAACCGAATTGCAG 540
consensus_7761#1 GGAGAGCACACGATCGATTACGCTAATGTGGCACAGAAGGAAAAGCTAACCGAATTGCAG 470
consensus_7761#2 GGAGAGCACACGATCGATTACGCTAATGTGGCACAGAAGGAAAAGCTAACCGAATTGCAG 245
************************************************************
consensus_7761#0 CTGCGCATTCGTCAACTCCTCGACCAGGTGGACCAAATCACAAAGGAGCAGAACTACCAG 600
consensus_7761#1 CTGCGCATTCGTCAACTCCTCGACCAGGTGGACCAAATCACAAAGGAGCAGAACTACCAG 530
consensus_7761#2 CTGCGCATTCGTCAACTCCTCGACCAGGTGGACCAAATCACAAAGGAGCAGAACTACCAG 305
************************************************************
consensus_7761#0 AGATACCGTGAAGAACGCTTCCGACAAACCAGCGACAGTACCAACCAGCGTGTCTTGTGG 660
consensus_7761#1 AGATACCGTGAAGAACGCTTCCGACAAACCAGCGACAGTACCAACCAGCGTGTCTTGTGG 590
consensus_7761#2 AGATACCGTGAAGAACGCTTCCGACAAACCAGCGACAGTACCAACCAGCGTGTCTTGTGG 365
************************************************************
consensus_7761#0 TGGTCGGTTGCTCAAACCGTAGTGCTGCTGATAATGGGCGTGTGGCAGATGAGGCATCTC 720
consensus_7761#1 TGGTCGGTTGCTCAAACCGTAGTGCTGCTGATAATGGGCGTGTGGCAGATGAGGCATCTC 650
consensus_7761#2 TGGTCGGTTGCTCAAACCGTAGTGCTGCTGATAATGGGCGTGTGGCAGATGAGGCATCTC 425
************************************************************
consensus_7761#0 AAGAGCTTCTTCGAAGCAAAGAAACTAGTTTAAACGAACGAATATCGTACGACAAGGTAT 780
consensus_7761#1 AAGAGCTTCT-------------------------------------------------- 660
consensus_7761#2 AAGAGCTTCTTCGAAGCAAAGAAACTAGTTTAAACGAACGAATATCGTACGACAAGGTAT 485
**********
consensus_7761#0 GTCACAATCTTTTTGTG---------------------- 797
consensus_7761#1 ---------------------------------------
consensus_7761#2 GTCACAATCTTTTTGTGAAAATAAATTAAAACAACATTG 524
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||