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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7762#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1354 fasta sequence
[CCGCGGACGCGTGGGCGAAGGGCCTGCGGGCTGGGTCCGATCCGCGCAAGCCGATCCTGATCGTGGACGAACACTTCGAGCGGCTCGAGTACCGGGCGCTGCAGCACAAAATCCTCTCGATCGAGGTGTGGGGCTGCGGCAACCAGCAGCAGCGCGACGTCCAGCTCGACATCAAGAAGTGGCAGGTGAAGGAAGCGGAACGGCAGCGAACGGTCAAGATGACGGCGGCCGACTGGATGGACCATCCCGATCGCTACCTGCTCGAGCTCGGTGGCCGTCAAAACTATAACAACTCGTCCACGTAATGCCCCCCCCAGTTCGGAGGGAAACGACAGGATAGTCGTTGTTGCTGCTGCACTCCAGGCGTTAAGGTGGGGTTCGCTATA-GGGGGAAAAAGTGTCAAAATTCAAACTCTCATGTATCCAAATGGGGGAACGGATACAGATTTCAACACTCTAGGCTGGGGTGGGG-TTTGCAAGGGAATGAAATGTGTACTTATGTTGTTTTAAAGTGTGCCTGTTTGCGCTATTTAGCATCGTGGATAGCATCGCGTGAACACGTGACTGTAATGATCATGGTAGAGATTAGACGACAACAACTTATGAGTAGTAGATATGCAATAAGCATTGGTTTAGCTAAAAAATAATTAACTAAACATAACACATTTCGAAAAAAAGACAGTGATACATAGGACAAAGACTACACACACGCGGCACAAAGACTTCTGTTTTACATCATTTTATTGCTACACGCTTATCTCACTTTTGTTTTTTGTTTTTGTTTAAGGTGCTAAGCAAAAGAGCCAAAAGCAACATTTCCATGTACTGTGTGAGCTTTTGCTGTTCACATTATTAATTTGTTCCCACAATGTGTGTGTGTACTTACATCTTTAGCACGTACTGAGCAGTGTGCAGTGTGTGTTGTTACCTTTAAGGGGCAGAGATACATTATTCTAGTTTACTGGTTTTTTTTTCTTCTTTTCGCTATTATACTTTTCCTTCCTTCCTTATGCAGTGCAGTCGGTACAAGTCGGAAGGAATGTGGCTGTAGTTTTATATTGCAACACAATCAAATTCAGTGATTCAATGATGTTATTAACGTATGCTGGAGTCGCTCGTGCTTGTGGCAGTGGCCCAATTTTTTAAACTGCTTTTGGACACGCAAAATAGTTAAAATTATTTCCCCCTCCCGTGTCTCGGACAGAACATTTGTTTACAAAAAATGGTTGGCATCAAATTATAAACTACAACAGGCGTTGACCGTATTTAAGTATTTCTTACTGCTGTAATGTTACTTATTGCTGTAGCTGTGAAACTCTAGTGTCTTATGCAAATGATGATGATGATGAAGCGAA]
[+] EMBL BM582178 [CCGCGGACGCGTGGGCGAAGGGCCTGCGGGCTGGGTCCGATCCGCGCAAGCCGATCCTGATCGTGGACGAACACTTCGAGCGGCTCGAGTACCGGGCGCTGCAGCACAAAATCCTCTCGATCGAGGTGTGGGGCTGCGGCAACCAGCAGCAGCGCGACGTCCAGCTCGACATCAAGAAGTGGCAGGTGAAGGAAGCGGAACGGCAGCGAACGGTCAAGATGACGGCGGCCGACTGGATGGACCATCCCGATCGCTACCTGCTCGAGCTCGGTGGCCGTCAAAACTATAACAACTCGTCCACGTAATGCCCCCCCCAGTTCGGAGGGAAACGACAGGATAGTCGTTGTTGCTGCTGCACTCCAGGCGTTAAGGTGGGGTTCGCTATA GGGGGAAAAAGTGTCAAAATTCAAACTCTCATGTATCCAAATGGGGGAACGGATACAGATTTCAACACTCTAGGCTGGGGTGGGG TTTGCAAGGGAATGAAATGTGTACTTATGTTGTTTTAAAGTGTGCCTGTTTGCGCTATTTAGCATCGTGGATAGCATCGCGTGAACACGTGACTGTAATGATCATGGTAGAGATTAGACGACAACAACTTATGAGTAGTAGATATGCAATAAGCATTGGTTTAGC ]
[+] EMBL BX620859 [ ACGGCAGCGAACGGTCANGANGACGGCGGCCGACTGGATGGACCATCCCGATCGCTACCTGCTCGAGCTCGGTGGCCGTCAAAACTATAACAACTCGTCCACGTAATGCCCCCCCCAGTTCGGAGGGAAACGACAGGATAGTCGTTGTTGCTGCTGCACTCCAGGCGTTAAGGTGGGGTTCGCTATA GGGGGAAAAAGTGTCAAAATTCAAACTCTCATGTATCCAAATGGGGGAACGGATACAGATTTCAACACTCTAGGCTGGGGTGGGG TTTGCAAGGGAATGAAATGTGTACTTATGTTGTTTTAAAGTGTGCCTGTTTGCGCTATTTAGCATCGTGGATAGCATCGCGTGAACACGTGACTGTAATGATCATGGTAGAGATTAGACGACAACAACTTATGAGTAGTAGATATGCAATAAGCATTGGTTTAGCTAAAAAATAATTAACTAAACATAACACATTTCGAAAAAAAGACAGTGATACATAGGACAAAGACTACACACACGCGGCAGAAAGACTTCTGTTTTACATCATTTTATTGCTACACGCTTATCTCACTTT ]
[+] EMBL BM618234 [ atggCCCCCCAGTTCGGAGGGAAACGACAGGATAGTCGTTGTTGCTGCTGCACTCCAGGCGTTAAGGTGGGGTTCCATA A GGGGGAAAAAGTGTCAAAATTCAAACTCTCATGTATCCAAATGGGGGAACGGATACAGATTTCAACACTCTACGCTGGGGTGGGGTTTTGTAAGGGAATGAAATGTGTACTTATGTTGTTTTAAAGTGTGCCTGTTTGCGCTATTTAACATCGTGGATAGCATCGCGTGAACACGTGACTGTAATGATCATGGCAGAGATTAGACGACAACAACTTATGAGTAGTAGATATGCAATAAGCATTGGTTTAGCTAAAAAATAATTAACTAAACATAACACATTTCGAAAAAAAGACAGTGATACATAGGACAAAGACTACACACACGCGGGACAAAGACTTCTGTTTTACATCATTTTATTGCTA ]
[+] EMBL BX624395 [ CGGAGGGAAACGACAGGATAGTCGTTGTTGCTGCTGCACTCCAGGCGTTAAGGTGGGGTTCGC ATANGGGGGAAAAAGTGTCAAAATTCAAACTCTCATGTATCCAAATGGGGGAACGGATACAGATTTCAACACTCTAGGCTGGGGTGGGGTTTTGTAAGGGAATGAAATGTGTACTTATGTTGTTTTAAAGTGTGCCTGTTTGCGCTATTTAGCATCGTGGATAGCATCGCGTGAACACGTGACTGTAATGATCATGGTAGAGATTAGACGACAACAACTTATGAGTAGTAGATATGCAATAAGCATTGGTTTAGCTAAAAAATAATTAACTAAACATAACACATTTCGAAAAAAAGACAGTGATACATAGGACAAAGACTACACACACGCGGCACAAAGACTTCTGTTTTACATCATTTTATTGCTACACGCTTATCTCACTTTTGTTTTTTGTTTTTGTTTAAGGTGCTAAGCAAAAGAGCCAAAAGCAACATTTCCATGTACTGTGTGAGCTTTTGCTGTTCACATTATTAATTTGTTCCCACAATGTGTGTGTGTACTTACATCTTTAGCACGTACTGAGCAGTGTGCAGTGTGTGTTGTTACCTTTAAGGGGCAGAGATACATTATTCTAGTTTACTGGTTTTTTTTTCTTCTTTTCGCTATTATACTTTTCCTTCCTTCCTTAT ]
[+] EMBL BX623427 [ GCTAAGCAAAAGAGCCAAAAGCAACATTTCCATGTACTGTGTGAGCTTTTGCTGTTCACATTATTAATTTGTTCCCACAATGTGTGTGTGTACTTACATCTTTAGCACGTACTGAGCAGTGTGCAGTGTGTGTTGTTACCTTTAAGGGGCAGAGATACATTATTCTAGTTTACTGTTTTTTTTTTCTTCTTTTCGCTATTATACTTTTCCTTCCTTCCTTATGCAGTGCAGTCGGTACAAGTCGGAAGGAATGTGGCTGTAGTTTTATATTGCAACACAATCAAATTCAGTGATTCAATGATGTTATTAACGTATGCTGGAGTCGCTCGTGCTTGTGGCAGTGGCCCAATTTTTTAAACTGCTTTTGGACACGCAAAATAGTTAAAATTATTTCCCCCTCCCGTGTCTCGGACAGAACATTTGTTTACAAAAAATGGTTGGCATCAAATTATAAACTACAACAGGCGTTGACCGTATTTAAGTATTTCTTACTGCTGTAATGTTACTTATTGCTGTAGCTGTGAAACTCTAGTGTCTTATGCAAATGATGATGATGATGAAGCGAA]
consensusID : consensus_7762#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence
[GAATNGCCCGAGGNTAACGGCAGCGAACGGTCAAGATGACGGCGGCCGACTGGATGGACCATCCCGATCGCTACCTGCTCGAGCTCGGTGGCCGTCAAAACTATAACAACTCGTCCACGTAATGCCCCCCCCAGTTCGGAGGGAAACGACAGGATAGTCGTTGTTGCTGCTGCACTCCAGGCGTTAAGGTGGGGTTCGCTATAGGGGGAAAAAGTGTCAAAATTCAAACTCTCATGTATCCAAATGGGGGAACGGATACAGATTTCAACACTCTANCGCTGGGGTGGGGTTTGCAAGGGAATGAAATGTGTACTTATGTTGTTTTAAAGTGTGCCTGTTTGCGCTATTTAGCATCGTGGATAGCATCGCGTGAACACGTGACTGTAATGATCATGGTAGAGATTAGACGACAACAACTTATGAGTAGTAGATATGCAATAACGCATTGGTTTACGCTAAACACAATAATTAACTAAACATAACACATTTCCGAAAAAAAGACAGTGATACATAGGACAAAGACTACACACACGCGCGCAGAAAGCACTTCTGTTTTACATCATTTA]
[+] EMBL AL933304 [GAATNGCCCGAGGNTAACGGCAGCGAACGGTCAAGATGACGGCGGCCGACTGGATGGACCATCCCGATCGCTACCTGCTCGAGCTCGGTGGCCGTCAAAACTATAACAACTCGTCCACGTAATGCCCCCCCCAGTTCGGAGGGAAACGACAGGATAGTCGTTGTTGCTGCTGCACTCCAGGCGTTAAGGTGGGGTTCGCTATAGGGGGAAAAAGTGTCAAAATTCAAACTCTCATGTATCCAAATGGGGGAACGGATACAGATTTCAACACTCTANCGCTGGGGTGGGGTTTGCAAGGGAATGAAATGTGTACTTATGTTGTTTTAAAGTGTGCCTGTTTGCGCTATTTAGCATCGTGGATAGCATCGCGTGAACACGTGACTGTAATGATCATGGTAGAGATTAGACGACAACAACTTATGAGTAGTAGATATGCAATAACGCATTGGTTTACGCTAAACACAATAATTAACTAAACATAACACATTTCCGAAAAAAAGACAGTGATACATAGGACAAAGACTACACACACGCGCGCAGAAAGCACTTCTGTTTTACATCATTTA]
consensusID : consensus_7762#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 565 fasta sequence
[GGCTCAGGCCAGAATCTCCCGNGGTTTTAGACTGTAATGATCATGGTACNGATTAGACGACAACAACTTATGAGTAGTAGATATGCAATAAGCATTGGTTTAGCTAAAAAATAATTAACTAAACATAACACATTTCGAAAAAAAGACAGTGATACATAGGACAAAGACTACACACACGCGGCAGAAAGACTTCTGTTTTACATCATTTATTGCTACACGCTTATCTCACTTGTGTGGTAAGGTGCTAAGCAAAAGAGCCAAAAGCAACATTTCCATGTACTGTGTGAGCTTTTGCTGTTCACATTATTAATTTGTTCCCACAAATGTGTGTGTGTGTACTTACATCTTTAGCCACGTACTGAGCAGTGTGCAGTGTCTTTGTTACCTTTACAGGGGCAGAGATACATTATTCTAGTTTACTGTATTTTTTCTTTTCGCTATTATACCTTTTCCTTCCTTATGCAGTGCAGTGTACAAGTCGGAAGTAATGTGGCTGTAAGTTTTATATTGCAACACAATCATATTCAGTGATTCAATGAATGTTCATTAACATATGCTGGACTCG]
[+] EMBL AL696807 [GGCTCAGGCCAGAATCTCCCGNGGTTTTAGACTGTAATGATCATGGTACNGATTAGACGACAACAACTTATGAGTAGTAGATATGCAATAAGCATTGGTTTAGCTAAAAAATAATTAACTAAACATAACACATTTCGAAAAAAAGACAGTGATACATAGGACAAAGACTACACACACGCGGCAGAAAGACTTCTGTTTTACATCATTTATTGCTACACGCTTATCTCACTTGTGTGGTAAGGTGCTAAGCAAAAGAGCCAAAAGCAACATTTCCATGTACTGTGTGAGCTTTTGCTGTTCACATTATTAATTTGTTCCCACAAATGTGTGTGTGTGTACTTACATCTTTAGCCACGTACTGAGCAGTGTGCAGTGTCTTTGTTACCTTTACAGGGGCAGAGATACATTATTCTAGTTTACTGTATTTTTTCTTTTCGCTATTATACCTTTTCCTTCCTTATGCAGTGCAGTGTACAAGTCGGAAGTAATGTGGCTGTAAGTTTTATATTGCAACACAATCATATTCAGTGATTCAATGAATGTTCATTAACATATGCTGGACTCG]
[+] EMBL BX626829 [ TTTCCATGTACTGTGTGAGCTTTTGCTGTTCNCATTATTAATTTGTNCCCAC AATGTGTGTGTGTGTACTTACATCTTTAG CACGTACTGANCAGTGTGCA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7762#0 CCGCGGACGCGTGGGCGAAGGGCCTGCGGGCTGGGTCCGATCCGCGCAAGCCGATCCTGA 60
consensus_7762#1 ------------------------------------------------------------
consensus_7762#2 ------------------------------------------------------------
consensus_7762#0 TCGTGGACGAACACTTCGAGCGGCTCGAGTACCGGGCGCTGCAGCACAAAATCCTCTCGA 120
consensus_7762#1 ------------------------------------------------------------
consensus_7762#2 ------------------------------------------------------------
consensus_7762#0 TCGAGGTGTGGGGCTGCGGCAACCAGCAGCAGCGCGACGTCCAGCTCGACATCAAGAAGT 180
consensus_7762#1 ------------------------------------------------------------
consensus_7762#2 ------------------------------------------------------------
consensus_7762#0 GGCAGGTGAAGGAAGCGGAACGGCAGCGAACGGTCAAGATGACGGCGGCCGACTGGATGG 240
consensus_7762#1 ---GAATNGCCCGAGGNTAACGGCAGCGAACGGTCAAGATGACGGCGGCCGACTGGATGG 57
consensus_7762#2 --GGCTCAGGCCAGAATCTCCCGNGGTTTTAGACTGTAATGATCATGGT--ACNGATTAG 56
* * * * **** ** ** * * *
consensus_7762#0 ACCATCCCGATCGCTACCTGCTCGAGCT-CGGTGGCCGTCAAAACTATAACAACTCGTCC 299
consensus_7762#1 ACCATCCCGATCGCTACCTGCTCGAGCT-CGGTGGCCGTCAAAACTATAACAACTCGTCC 116
consensus_7762#2 ACGACAACAACTTATGAGTAGTAGATATGCAATAAGCATTGGTTTAGCTAAAAAATAATT 116
** * * * * * * ** * * * * * * **
consensus_7762#0 ACGTAATGCCCCCCCCAGTTCGGAGGGAAACGACAG-GATAGTCGTTGTTGCTGCTGCAC 358
consensus_7762#1 ACGTAATGCCCCCCCCAGTTCGGAGGGAAACGACAG-GATAGTCGTTGTTGCTGCTGCAC 175
consensus_7762#2 AACTAA-ACATAACACATTTCGAAA--AAAAGACAGTGATACATAGGACAAAGACTACAC 173
* *** * * ** **** * *** ***** **** ** ***
consensus_7762#0 TCCAGGCGTTAAGGTGGGGTTCGCTATAGGGGGAAAAAGTGTCAAAATTCAAACTCTCAT 418
consensus_7762#1 TCCAGGCGTTAAGGTGGGGTTCGCTATAGGGGGAAAAAGTGTCAAAATTCAAACTCTCAT 235
consensus_7762#2 AC-ACGCGGCAGAAAGACTTCTGTTTTACATC-ATTTATTGCTACACGCTTATCTCACTT 231
* * *** * * * * * ** * * ** * * * *** * *
consensus_7762#0 GTATCCAAATGGGGGAACGGATACAG---ATTTCAACACTCTAG-GCTGGGGTGGGGTTT 474
consensus_7762#1 GTATCCAAATGGGGGAACGGATACAG---ATTTCAACACTCTANCGCTGGGGTGGGGTTT 292
consensus_7762#2 GTGTGGTAAGGTGCTAAGCAAAAGAGCCAAAAGCAACATTTCCATG-TACTGTGTGAGCT 290
** * ** * * ** * * ** * ***** * * * *** * *
consensus_7762#0 GCAAGGGAATGAAATGTGTACTTATGTTGTTTTAAAGTGTGCCTGTTTGCGC---TATTT 531
consensus_7762#1 GCAAGGGAATGAAATGTGTACTTATGTTGTTTTAAAGTGTGCCTGTTTGCGC---TATTT 349
consensus_7762#2 TTTGCTGTTCACATTATTAATTTGT-TCCCACAAATGTGTGTGTGTGTACTTACATCTTT 349
* * * * * ** * * ** ***** *** * * * ***
consensus_7762#0 AGCATCGTGGATAGCATCGCGTGAACACGTGACTGTAATGATCATGGTAGAGATTAGACG 591
consensus_7762#1 AGCATCGTGGATAGCATCGCGTGAACACGTGACTGTAATGATCATGGTAGAGATTAGACG 409
consensus_7762#2 AGCCACGTACTGAGCAGTGTGCAGTGTCTTTGTTACCTTTACAGGGGCAGAGAT-ACATT 408
*** *** **** * * * * * * * ** ****** * *
consensus_7762#0 ACAACAACTTA---TGAGTAGTAGATATGCAATAA-GCATTGGTTTA-GCTAAAAA--AT 644
consensus_7762#1 ACAACAACTTA---TGAGTAGTAGATATGCAATAACGCATTGGTTTACGCTAAACACAAT 466
consensus_7762#2 ATTCTAGTTTACTGTATTTTTTCTTTTCGCTATTATACCTTTTCCTTCCTTATGCAGTGC 468
* * *** * * * * ** ** * * ** * ** *
consensus_7762#0 AATTAACTAAACATAACACATTTC-GAAAAAAAGACAGTGATACATAGGACAAAGACTAC 703
consensus_7762#1 AATTAACTAAACATAACACATTTCCGAAAAAAAGACAGTGATACATAGGACAAAGACTAC 526
consensus_7762#2 AGTGTACAAGTCGGAAGTAATGT------GGCTGTAAGTTTTATATTGCAACACAATCAT 522
* * ** * * ** ** * * *** ** ** * * * * *
consensus_7762#0 ACACACGCG-GCACAAAG-ACTTCTGTTTTACATCATTTTATTGCTACACGCTTATCTCA 761
consensus_7762#1 ACACACGCGCGCAGAAAGCACTTCTGTTTTACATCATTTA-------------------- 566
consensus_7762#2 ATTCAGTGATTCAATGAATG-TTCATTAACATATGCTGGACTCG---------------- 565
* ** ** * *** * * ** *
consensus_7762#0 CTTTTGTTTTTTGTTTTTGTTTAAGGTGCTAAGCAAAAGAGCCAAAAGCAACATTTCCAT 821
consensus_7762#1 ------------------------------------------------------------
consensus_7762#2 ------------------------------------------------------------
consensus_7762#0 GTACTGTGTGAGCTTTTGCTGTTCACATTATTAATTTGTTCCCACAATGTGTGTGTGTAC 881
consensus_7762#1 ------------------------------------------------------------
consensus_7762#2 ------------------------------------------------------------
consensus_7762#0 TTACATCTTTAGCACGTACTGAGCAGTGTGCAGTGTGTGTTGTTACCTTTAAGGGGCAGA 941
consensus_7762#1 ------------------------------------------------------------
consensus_7762#2 ------------------------------------------------------------
consensus_7762#0 GATACATTATTCTAGTTTACTGGTTTTTTTTTCTTCTTTTCGCTATTATACTTTTCCTTC 1001
consensus_7762#1 ------------------------------------------------------------
consensus_7762#2 ------------------------------------------------------------
consensus_7762#0 CTTCCTTATGCAGTGCAGTCGGTACAAGTCGGAAGGAATGTGGCTGTAGTTTTATATTGC 1061
consensus_7762#1 ------------------------------------------------------------
consensus_7762#2 ------------------------------------------------------------
consensus_7762#0 AACACAATCAAATTCAGTGATTCAATGATGTTATTAACGTATGCTGGAGTCGCTCGTGCT 1121
consensus_7762#1 ------------------------------------------------------------
consensus_7762#2 ------------------------------------------------------------
consensus_7762#0 TGTGGCAGTGGCCCAATTTTTTAAACTGCTTTTGGACACGCAAAATAGTTAAAATTATTT 1181
consensus_7762#1 ------------------------------------------------------------
consensus_7762#2 ------------------------------------------------------------
consensus_7762#0 CCCCCTCCCGTGTCTCGGACAGAACATTTGTTTACAAAAAATGGTTGGCATCAAATTATA 1241
consensus_7762#1 ------------------------------------------------------------
consensus_7762#2 ------------------------------------------------------------
consensus_7762#0 AACTACAACAGGCGTTGACCGTATTTAAGTATTTCTTACTGCTGTAATGTTACTTATTGC 1301
consensus_7762#1 ------------------------------------------------------------
consensus_7762#2 ------------------------------------------------------------
consensus_7762#0 TGTAGCTGTGAAACTCTAGTGTCTTATGCAAATGATGATGATGATGAAGCGAA 1354
consensus_7762#1 -----------------------------------------------------
consensus_7762#2 -----------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||