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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7763#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 968 fasta sequence
[CCGTGTCGGACGATGCTGATACGCAAGCGCGTGCTGCGCACCGGCGACGGTACGCACCAGTACAACGAGCAGGAGCTGCAGGCGCTGCATGGTCGACTACGTCAACCAGCTCGATCACGAGTCGGAGCAGGCGGTGTGGGGCTGGGACGATAAGGACATGAACGAGCAGGACCGCCA-GATGCCACCGTCAGAAATAAGGCCGATTAGTGCAAGCAATGGAGGGAGAGGGAGAAGGGGAGGGAGGGGGGAGGGATATTGGGGATTAGAAGATAGAAGCTAGAGAGAAGCACATTATTGCACAACTTCAGGGCGAGATGGAGGGCGGCGCACACACACACGATAAGGACATACGCTCGATGAGTGTTGGGCGTGTGCGTTTGTATAGCACGGGAGAACCACAGGGACACAAAGCACACCACAGGGAGATGGTGTTACGTTATGTTTAACTATTTTTTTGTTTTAACGCTTTCTATCCTATATATCTCTCTCCTTCTCTCTGTCTTGAGCACACACACACACATACATTCCC-TTTCTTTCTTAATTGCTTGAGCGATAAAAAAAAGCATGGATCGATCTTGCATTTAGAACAGTGCACTTGACACGGGCAAGTGTGAATGCTTTCGAGCTTGGTTTTTGTTGTGAAAAGGGGCTGTGGGAGGCTGTGGAAGATTTTTGCGGCAGGCCTAAACCTTTCCTAAAGGCATCCTTTCTCTCCCCCGCCCTGAATCAGTAAGAAACGGCTTTTGCGATTTGCACCAATGCGCGACATTTGCGACAAGCGGAAGC-GAAAGTGAACAGTGGGAAGAACTTAAACGAACAACCAATGACATGACGCCAGAATCGGGTGGGCCAACGCGACAGAGAACGCACAGGGCACAGAGGGGCACAGATCGCAACCGGGCAGAACGGGAGTGTTCGCGTTTATTTATTTGTCTATCGCTATCTTAGTAATTAGCTTAAGCTTGAGT]
[+] EMBL CNS08TQ4 [CCGTGTCGGACGATGCTGATACGCAAGCGCGTGCTGCGCACCGGCGACGGTACGCACCAGTACAACGAGCAGGAGCTGCAGGCGCTGCATGGTCGACTACGTCAACCAGCTCGATCACGAGTCGGAGCAGGCGGTGTGGGGCTGGGACGATAAGGACATGAACGAGCAGGACCGCCA GATGCCACCGTCAGAAATAAGGCCGATTAGTGCAAGCAATGGAGGGAGAGGGAGAAGGGGAGGGAGGGGGGAGGGATATTGGGGATTAGAAGATAGAAGCTAGAGAGAAGCACATTATTGCACAACTTCAGGGCGAGATGGAGGGCGGCGCACACACACACGATAAGGACATACGCTCGATGAGTGTTGGGCGTGTGCGTTTGTATAGCACGGGAGAACCACAGGGACACAAAGCACACCACAGGGAGATGGTGTTACGTTATGTTTAACTATTTTTTTGTTTTAACGCTTTCTATCCTATATATCTCTCTCCTTCTCTCTGTCTTGAGCACACACACACACATACATTCCC TTTCTTTCTTAATTGCTTGAGCGATAAAAAAAAGCATGGATCGATCTTGCATTTAGAACAGTGCACTTGACACGGGCAAGTGTGAATGCTTTCGAGCTTGGTTTTTGTTGTGAAAAGGGGCTGTGGGAGG ]
[+] EMBL CNS08LX3 [ ACGCAAGCGCGTGCTGCGCACCGGCGACGGTACGCACCAGTACAACGAGCAGGAGCTGCAGGCGC GCATGGTCGACTACGTCAACCAGCTCGATCACGAGTCGGAGCAGGCGGTGTGGGGCTGGGACGATAAGGACATGAACGAGCAGGACCGCCAGGATGCCACCGTCAGAAATAAGGCCGATTAGTGCAAGCAATGGAGGGAGAGGGAGAAGGGGAGGGAGGGGGGAGGGATATTGGGGATTAGAAGATAGAAGCTAGAGAGAAGCACATTATTGCACAACTTCAGGGCGAGATGGAGGGCGGCGCACACACACACGATAAGGACATACGCTCGATGAGTGTTGGGCGTGTGCGTTTGTATAGCACGGGAGAACCACAGGGACACAAAGCACACCACAGGGAGATGGTGTTACGTTATGTTTAACTATTTTTTTGTTTTAACGCTTTCTATCCTATATATCTCTCTCCTTCTCTCTGTCTTGAGCACACACACACACATACATTCCCTTTTCTTTCTTAATTGCTTGAGCGATAAAAAAAAGCATGGATCGATCTTGCATTTAGAACAGTGCACTTGACACGGGCAAGTGTGAATGCTTTCGAGCTTGGTTTTTGTTGTGAAAAGGGGCTGTGGGAGGCTGTGGAAGATTTTTGCGGCAGGCCTAAACCTTTCCTAAAGGCATCCTTTCTCTCCCCCGCCCTGAATCAGTAAGAAACGGCTTTTGCGATTTGCACCAATGCGCGACATTTGCGACAAGCGGAAGCAGAAg ]
[-] EMBL CNS08LX4 [ GATTAGAAGATAGAAGCTAGAGAGAAGCACATTATTGCACCACTTCAGGGCGAGATGGAGGGCCGCGGAAAAACACACGATAAGTACATACGCTCGATGAGTGTTGGGCGTGTGCGTTTGTATAGCACGGGAGAACCACAGGGACACAAAGCACACCACAGGGAGATGGTGTTACGTTATGTTTAACTATTTTTTTGTTTTAACGCTTTCTATCCTATATATCTCTCTCCTTCTCTCTGTCTTGAGAAAAAAAACAAACATACATTCCC TTTCTTTCTTAATTGCTTGAGCGATAAAAAAAAGCATGGATCGTTCTTGCATTTAGAACAGTGCACTTGACACGGGCAAGTGTGAATGCTTTCGAGCTTGGTTTTTGTTGTGAAAAGGGGCTGTGGGAGGCTGTGGAAGATTTTTGCGGCAGGCCTAAACCTTTCCTAAAGGCATCCTTTCTCTCCCCCGCCCTGAATCAGTAAGAAACGGCTTTTGCGATTTGCACCAATGCGCGACATTTGCGACAAGCGGAAGC GAAAGTGAACAGTGGGAAGAACTTAAACGAACAACCAATGACATGACGCCAGAATCGGGTGGGCCAACGCGACAGAGAACGCACAGGGCACAGAGGGGCACAGATCGCAACCGGGCAGAACGGGAGTGTTCGCGTTTATTTATTTGTCTATCGCTATCTTAGTAATTAGCTTAAGCTTGAGT]
[+] EMBL BX617135 [ GGCGCACACACACACGATAAGGACATACGCTCGATGAGTGTTGGGCGTGTGCGTTTGTATAGCACGGGAGAACCACAGGGACACAAAGCACACCACAGGGAGATGGTGTTACGTTATGTTTAACTATTTTTTTGTTTCAACGCTTTCTATCCTATATCTCTCTCTCCTTCTCTCTGTCTTGAG CACACACACACATACATTCCC TTTCTTTCTTAATTGCTTGAGCGATAAAAAACA CATGGATCGATCTTGCATTTAGAACAGTGCACTTGACACGGGCAAGTGTGAATGCTTTCGAGCTTGGTTTTTGTTGTGAAAAGGGGCTGTGGGAGGCTGTGGAAGATTTTTGCGGCAGGCCTAAACCTTTCCTAAAGGCATCCTTTCTCTCCCCCGCCCTGAATCAGTAAGAAACGGCTTTTGCGATTTGCACCAATGCGTGACATTTGCGACAAGCGGAAGC GAAAGTGAACAGTGGGAAGAACTTAAACGAACAACCAATGACATGACGCCAGAATCGGGTGGGCCA ]
[-] EMBL CNS08TQ5 [ ACGTTATGTTTAACTATTTTTTTGTTTTAACGCTTTCTATCCTATATATCTCTCTCCTTCTCTCTGTCTTGAGCACACACACACACATACATTCCC TTTCTTTCTTAATTGCTTGAGCGATAAAAAAAAGCATGGATCGATCTTGCATTTAGAACAGTGCACTTGACACGGGCAAGTGTGAATGCTTTCGAGCTTGGTTTTTGTTGTGAAAAGGGGCTGTGGGAGGCTGTGGAAGATTTTTGCGGCAGGCCTAAACCTTTCCTAAAGGCATCCTTTCTCTCCCCCGCCCTGAATCAGTAAGAAACGGCTTTTGCGATTTGCACCAATGCGCGACATTTGCGACAAGCGGAAGC GAAAGTGAACAGTGGGAAGAACTTAAACGAACAACCAATGACATGACGCCAGAATCGGGTGGGCCAACGCGACAGAGAACGCACAGGGCACAGAGGGGCACAGATCGCAACCGGGCAGAACGGGAGTGTTCGCGTTTATTTATTTGTCTATCGCTATCTTAGTAATTAGaaa ]
consensusID : consensus_7763#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence
[GCCCGCAGGNTAAAGCACATTATTGCACAACTTCAGGGCGAGATGGAGGGCGACGCACACACACACACGATAAGGACATACGCTCGATGAGTGTTGGGCGTGTGCGTTTGTATATGCACGGGAGAACCACAGGGACACAAAGCACACCACAGGGAGATGGTGTTACGTATACGTTTAACTATTTTTTCTGTTTTAACGCTTTCTATCCTATATCTCTCTCTCCTTCTCTCTGTCTTGAGCACACACACACACATACATTCCCTTTCTTTCTTAATTGCTTGAAGCGATAAAAAACACTGTAATCGATCTTGCATTTAAACAGATGCACTTGTACACGGGCAAGCTGTGAATGCTTTCGAGCTTGGTTTCTGTTCGTGAAAAGGGGCTGTGGGAGGCTGTGGAAGATTCTTTGCGGCAGGCCTAAACCTTTCCTAAAGGCATCTCTTCTCTCCCCCGGCCTGAATCAGTAAGAAACGGCTTTTGCGANTTGGACCAATGCGCGACATTTGCGACAAGCGGAAGCGCAAAGTGAACAGTGGGAAGAACTTAAACGAACAACCAATGAC]
[+] EMBL AL933225 [GCCCGCAGGNTAAAGCACATTATTGCACAACTTCAGGGCGAGATGGAGGGCGACGCACACACACACACGATAAGGACATACGCTCGATGAGTGTTGGGCGTGTGCGTTTGTATATGCACGGGAGAACCACAGGGACACAAAGCACACCACAGGGAGATGGTGTTACGTATACGTTTAACTATTTTTTCTGTTTTAACGCTTTCTATCCTATATCTCTCTCTCCTTCTCTCTGTCTTGAGCACACACACACACATACATTCCCTTTCTTTCTTAATTGCTTGAAGCGATAAAAAACACTGTAATCGATCTTGCATTTAAACAGATGCACTTGTACACGGGCAAGCTGTGAATGCTTTCGAGCTTGGTTTCTGTTCGTGAAAAGGGGCTGTGGGAGGCTGTGGAAGATTCTTTGCGGCAGGCCTAAACCTTTCCTAAAGGCATCTCTTCTCTCCCCCGGCCTGAATCAGTAAGAAACGGCTTTTGCGANTTGGACCAATGCGCGACATTTGCGACAAGCGGAAGCGCAAAGTGAACAGTGGGAAGAACTTAAACGAACAACCAATGAC]
consensusID : consensus_7763#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence
[CCCCGAGGTTAGATAGGAGATAGAAGCTAGAGAGAAGCACATTATTGCACAACTTCAGGGCGAGATGGAGGGCGGCGCACACACACACGATAAGGACATACGCTCGATGAGTGTTGGGCGTGTGCGTTGTATAGCACGGGAGAACCACAGGGGACACAAAGCACACCACAGGGGAGATGGTGTTACGTTATGTTTAACTATTGTTTTAACGCTTTCTATCCTATATCTCTCTCTCCTTCTCTCTGTCTTGAGCACACACACACATACATTCCCTTTCTTTCTTAATTGCTTGAGCGATAAAAAACACATGGATCGATCTTGCATTTAGAACAGTGCACTTGACACGGGCAAGTGTGAATGCTTTCG]
[+] EMBL AL931630 [CCCCGAGGTTAGATAGGAGATAGAAGCTAGAGAGAAGCACATTATTGCACAACTTCAGGGCGAGATGGAGGGCGGCGCACACACACACGATAAGGACATACGCTCGATGAGTGTTGGGCGTGTGCGTTGTATAGCACGGGAGAACCACAGGGGACACAAAGCACACCACAGGGGAGATGGTGTTACGTTATGTTTAACTATTGTTTTAACGCTTTCTATCCTATATCTCTCTCTCCTTCTCTCTGTCTTGAGCACACACACACATACATTCCCTTTCTTTCTTAATTGCTTGAGCGATAAAAAACACATGGATCGATCTTGCATTTAGAACAGTGCACTTGACACGGGCAAGTGTGAATGCTTTCG]
consensusID : consensus_7763#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence
[CAGGCCAAGAAATCGGCACGNTTGAGGGGATATTGGGGATTAGGAGCATAGAAGCTAGAGAGAAGCACATTATTGCACAACTTCAGGGGCGAGATGGAGGGCGACGCACACACACACACGATAAGGACATACGCTCGATGAGTGTTGGGCGTGTGCGTTTGTATAGCACGGGAGAACCACAGGGGACACAAATGCACACCACAGCGGGAGANTGGGTGGTTACGCTGTACGGTTTAACCTAATTNTTCTATGGTGTTTAACGGCCATTGTCCTAGTCCGTANTAGTCGTCTCGTCGTCACGTTTCCTCGTCNTGGATCG]
[+] EMBL BX468367 [CAGGCCAAGAAATCGGCACGNTTGAGGGGATATTGGGGATTAGGAGCATAGAAGCTAGAGAGAAGCACATTATTGCACAACTTCAGGGGCGAGATGGAGGGCGACGCACACACACACACGATAAGGACATACGCTCGATGAGTGTTGGGCGTGTGCGTTTGTATAGCACGGGAGAACCACAGGGGACACAAATGCACACCACAGCGGGAGANTGGGTGGTTACGCTGTACGGTTTAACCTAATTNTTCTATGGTGTTTAACGGCCATTGTCCTAGTCCGTANTAGTCGTCTCGTCGTCACGTTTCCTCGTCNTGGATCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7763#1 ------------------------------------------------------------
consensus_7763#2 ------------------------------------------------------------
consensus_7763#0 CCGTGTCGGACGATGCTGATACGCAAGCGCGTGCTGCGCACCGGCGACGGTACGCACCAG 60
consensus_7763#3 ------------------------------------------------------------
consensus_7763#1 ------------------------------------------------------------
consensus_7763#2 ------------------------------------------------------------
consensus_7763#0 TACAACGAGCAGGAGCTGCAGGCGCTGCATGGTCGACTACGTCAACCAGCTCGATCACGA 120
consensus_7763#3 ------------------------------------------------------------
consensus_7763#1 ------------------------------------------------------------
consensus_7763#2 ------------------------------------------------------------
consensus_7763#0 GTCGGAGCAGGCGGTGTGGGGCTGGGACGATAAGGACATGAACGAGCAGGACCGCCAGAT 180
consensus_7763#3 ------------------------------------------------------------
consensus_7763#1 ------------------------------------------------------------
consensus_7763#2 ------------------------------------------------------------
consensus_7763#0 GCCACCGTCAGAAATAAGGCCGATTAGTGCAAGCAATGGAGGGAGAGGGAGAAGGGGAGG 240
consensus_7763#3 -------------------------------------------CAGGCCAAGAAATCGGC 17
consensus_7763#1 ---------------------------------GCCCGCAGGNTAAAGCACATTATTGCA 27
consensus_7763#2 ----------CCCCGAGGTTAGATAGGAG-ATAGAAGCTAGAGAGAAGCACATTATTGCA 49
consensus_7763#0 GAGGGGGGAGGGATATTGGGGATTAGAAG-ATAGAAGCTAGAGAGAAGCACATTATTGCA 299
consensus_7763#3 ACGNTTGAGGGGATATTGGGGATTAGGAGCATAGAAGCTAGAGAGAAGCACATTATTGCA 77
* ** ***************
consensus_7763#1 CAACTTCAGGG-CGAGATGGAGGGCGACGCACACACACACACGATAAGGACATACGCTCG 86
consensus_7763#2 CAACTTCAGGG-CGAGATGGAGGGCGGCGCACACACACA--CGATAAGGACATACGCTCG 106
consensus_7763#0 CAACTTCAGGG-CGAGATGGAGGGCGGCGCACACACACA--CGATAAGGACATACGCTCG 356
consensus_7763#3 CAACTTCAGGGGCGAGATGGAGGGCGACGCACACACACACACGATAAGGACATACGCTCG 137
*********** ************** ************ *******************
consensus_7763#1 ATGAGTGTTGGGCGTGTGCGTTTGTATATGCACGGGAGAACCACAGGG-ACACAAA-GCA 144
consensus_7763#2 ATGAGTGTTGGGCGTGTGCGTT-GTATA-GCACGGGAGAACCACAGGGGACACAAA-GCA 163
consensus_7763#0 ATGAGTGTTGGGCGTGTGCGTTTGTATA-GCACGGGAGAACCACAGGG-ACACAAA-GCA 413
consensus_7763#3 ATGAGTGTTGGGCGTGTGCGTTTGTATA-GCACGGGAGAACCACAGGGGACACAAATGCA 196
********************** ***** ******************* ******* ***
consensus_7763#1 CACCACAGGG-AGATGGTGTTACGTATACGTTTAACTATTTTTTCTGTTTTAACGCTTTC 203
consensus_7763#2 CACCACAGGGGAGATGGTGTTACGT-TATGTTTAACTATT------GTTTTAACGCTTTC 216
consensus_7763#0 CACCACAGGG-AGATGGTGTTACGT-TATGTTTAACTATTTTTT-TGTTTTAACGCTTTC 470
consensus_7763#3 CACCACAGCG-GGAGANTGGGTGGT-TACGCTGTACGGTTT-----AACCTAAT-TNTTC 248
******** * ** ** ** ** * * ** ** *** ***
consensus_7763#1 TATCCTATATCTCTCTCTCCTTCTCTCTGTCTTGAGCACACA-CACACACATACATTCCC 262
consensus_7763#2 TATCCTATATCTCTCTCTCCTTCTCTCTGTCTTGAGCACACA-CACACA--TACATTCCC 273
consensus_7763#0 TATCCTATATATCTCTCTCCTTCTCTCTGTCTTGAGCACACA-CACACACATACATTCCC 529
consensus_7763#3 TAT--GGTGTTTAACGGCCATTGTCCTAGTCCGTANTAGTCGTCTCGTCGTCACGTTTCC 306
*** * * * * * ** ** *** * * * * * ** ** **
consensus_7763#1 TTTCTTTCTTAATTGCTTGAAGCGATAAAAAACA-CTGTAATCGATCTTGCATTTAAACA 321
consensus_7763#2 TTTCTTTCTTAATTGCTTGA-GCGATAAAAAACA-CATGGATCGATCTTGCATTTAGAAC 331
consensus_7763#0 TTTCTTTCTTAATTGCTTGA-GCGATAAAAAAAAGCATGGATCGATCTTGCATTTAGAAC 588
consensus_7763#3 T--CGTCNTGGATCG--------------------------------------------- 319
* * * * ** *
consensus_7763#1 GATGCACTTGTACACGGGCAAGCTGTGAATGCTTTCGAGCTTGGTTTCTGTTCGTGAAAA 381
consensus_7763#2 AGTGCACTTG-ACACGGGCAAG-TGTGAATGCTTTCG----------------------- 366
consensus_7763#0 AGTGCACTTG-ACACGGGCAAG-TGTGAATGCTTTCGAGCTTGGTTTTTGTT-GTGAAAA 645
consensus_7763#3 ------------------------------------------------------------
consensus_7763#1 GGGGCTGTGGGAGGCTGTGGAAGATTCTTTGCGGCAGGCCTAAACCTTTCCTAAAGGCAT 441
consensus_7763#2 ------------------------------------------------------------
consensus_7763#0 GGGGCTGTGGGAGGCTGTGGAAGATT-TTTGCGGCAGGCCTAAACCTTTCCTAAAGGCAT 704
consensus_7763#3 ------------------------------------------------------------
consensus_7763#1 CTCTTCTCTCCCCCGGCCTGAATCAGTAAGAAACGGCTTTTGCGANTTGGACCAATGCGC 501
consensus_7763#2 ------------------------------------------------------------
consensus_7763#0 CCTTTCTCTCCCCCGCCCTGAATCAGTAAGAAACGGCTTTTGCGATTTGCACCAATGCGC 764
consensus_7763#3 ------------------------------------------------------------
consensus_7763#1 GACATTTGCGACAAGCGGAAGCGCAAAGTGAACAGTGGGAAGAACTTAAACGAACAACCA 561
consensus_7763#2 ------------------------------------------------------------
consensus_7763#0 GACATTTGCGACAAGCGGAAGCG-AAAGTGAACAGTGGGAAGAACTTAAACGAACAACCA 823
consensus_7763#3 ------------------------------------------------------------
consensus_7763#1 ATGAC------------------------------------------------------- 566
consensus_7763#2 ------------------------------------------------------------
consensus_7763#0 ATGACATGACGCCAGAATCGGGTGGGCCAACGCGACAGAGAACGCACAGGGCACAGAGGG 883
consensus_7763#3 ------------------------------------------------------------
consensus_7763#1 ------------------------------------------------------------
consensus_7763#2 ------------------------------------------------------------
consensus_7763#0 GCACAGATCGCAACCGGGCAGAACGGGAGTGTTCGCGTTTATTTATTTGTCTATCGCTAT 943
consensus_7763#3 ------------------------------------------------------------
consensus_7763#1 -------------------------
consensus_7763#2 -------------------------
consensus_7763#0 CTTAGTAATTAGCTTAAGCTTGAGT 968
consensus_7763#3 -------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||