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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7769#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 924 fasta sequence
[GACGAAAAGACGACGGTTGATGGAGCGGAACACGAACCGGAAGTGGTACTGCGCAAATCGAAACCTACCGCGACGCCCGCCACCTATCGCAATGCCGTCGATAACATTGAGCAAATCCTAATTGCGGAGAACCTATCGAAAGACTACTGGAAGTACTCCATCTCGAACCTGCTGGACAGCATGGAGGAGGACGGTGGTATCGTGTCGCTGCAGTGATGATGTGTGCAGCTCCCAGTAAAGCACCAAAGCCCCAACCTCCTTCGCCCTTGTACCTATAAACTGGCTTATCTTGGGACGGCCTGCAAAGGTGCTTAAAAAGTCACCCGAGGAGAGAGGGCTTAACAGATAGACTGATAGCGCAGTAAGGCGACTACCACTGGTGCGTGGTGACTCCCCGAGGATATCCACCCAACGCGTGTAGATACTGTGTCAAGGCAGCTACGAGCTTTAGTGTACAATCGAACAAACAAAGGAAGCAAAAGAAGTAACGAGTCAATTCCCGCTAAAGGCTGTGATTGGATTTATTGTTGCACGGGTCAGCTTGTGTTGGTGTGTGTGTGTGTAACGCAACACACTGTACGACCGCGAGATGAAGCATTATTATATTTAGGGTGTTATAAGTGCAAGAGTGACGTAAATCAATTCCAGTTAGTATCAAGGTGTTGCAATGTATGTTCTTTACTGTAAGAAGAAGGTGTTTTACGAGGCAAATACACCCTCCCGTGGACCCGTCCAAGTTACTGCTACGTTTACTTTATCGAGGTGTAATAGGAGTGCACTCCATGATGTCTACTCTGAAGCAGAATGCACTCATCGTTGCCAAGTCCCACGAAAGCCCAGTGAAAAACAACTCACCACGACCGTTCAGTCGGCCGGCGGACCTGGAGGGTGGAAATAAAAAAAAAAAAAAAAAAAAAAGGCCCC]
[+] EMBL CNS09OOO [GACGAAAAGACGACGGTTGATGGAGCGGAACACGAACCGGAAGTGGTACTGCGCAAATCGAAACCTACCGCGACGCCCGCCACCTATCGCAATGCCGTCGATAACATTGAGCAAATCCTAATTGCGGAGAACCTATCGAAAGACTACTGGAAGTACTCCATCTCGAACCTGCTGGACAGCATGGAGGAGGACGGTGGTATCGTGTCGCTGCAGTGATGATGTGTGCAGCTCCCAGTAAAGCACCAAAGCCCCAACCTCCTTCGCCCTTGTACCTATAAACTGGCTTATCTTGGGACGGCCTGCAAAGGTGCTTAAAAAGTCACCCGAGGAGAGAGGGCTTAACAGATAGACTGATAGCGCAGTAAGGCGACTACCACTGGTGCGTGGTGACTCCCCGAGGATATCCACCCAACGCGTGTAGATACTGTGTCAAGGCAGCTACGAGCTTTAGTGTACAATCGAACAAACAAAGGAAGCAAAAGAAGTAACGAGTCAATTCCCGCTAAAGGCTGTGATTGGATTTATTGTTGCACGGGTCAGCTTGTGTTGGTGTGTGTGTGTGTAACGCAACACACTGTACGACCGCGAGATGAAGCATTATTATATTTAGGGTGTTATAAGTGCAAGAGTGACGTAAATCAATTCCAGTTAGTATCAAGGTGTTGCAATGTATGTTCTTTACTGTAAGAAGAAGGTGTTTTACGAGGCAAATACACCCTCCCGTGGACCCGTCCAAGTTACTGCTACGTTTACTTTATCGAGGTGTAATAGGAGTGCACTCCATGATGTCTACTCTGAAGCAGAATGCACTCATCGTTGCCAAGTCCCACGAAAGCCCAGTGAAAAACAACTCACCACGACCGTTCAGTCGGCCGGCGGACCTGGAGGGTGGAAATAAAAAAAAAAAAAAAAAAAAAAGGCCCC]
[+] EMBL CNS09BO8 [ AGCGGAACA GAACCGGAAGTGGTACTGCGCAAATCGAAACCTACCGCGACGCCCGCCACCTATCGCAATGCCGTCGATAACATTGAGCAAATCCTTATTGCGGAGAACCTATCGAAAGACTACTGGAAGTACTCCATCTCGAACCTGCTGGACAGCATGGAGGAGGACGGTGGTATCGTGTCGCTGCAGTGATGATGTGTGCAGCTCCCAGTAAAGCACCAAAGCCCCAACCTCCTTCGCCCTTGTACCTATAAACTGGCTTATCTTGGGACGGCCTGCAAAGGTGCTTAAAAAGTCACCCGAGGAGAGAGGGCTTAACAGATAGACTGATAGCGCAGTAAGGCGACTACCACTGGTGCGTGGTGACTCCCCGAGGATATCCACCCAACGCGTATAGATACTGTGTCAAGGCAGCTACGAGCTTTAGTGTACAATCGAACAAACAAAG ]
[+] EMBL CNS09RBZ [ AAGTGGTACTGCGCAAATCGAAACCTACCGCGACGCCCGCCACCTATCGCAATGCCGTCGATAACATTGAGCAAATCCTAATTGCGGAGAACCTATCGAAAGACTACTGGAAGTACTCCATCTCGAACCTGCTGGACAGCATGGAGGAGGACGGTGGTATCGTGTCGCTGCAGTGATGATGTGTGCAGCTCCCAGTAAAGCACCAAAGCCCCAACCTCCTTCGCCCTTGTACCTATAAACTGGCTTATCTTGGGACGGCCTGCAAAGGTGCTTAAAAAGTCACCCGAGGAGAGAGGGCTTAACAGATAGACTGATAGCGCAGTAAGGCGACTACCACTGGTGCGTGGTGACTCCCCGAGGATATCCACCCAACGCGTATAGATACTGTGTCAAGGCAGCTACGAGCTTTAGTGTACAATCGAACAAACAAAGGAAGCAAAAGAAGTAACGAGTCAATTCCCGCTAAAGGCTGTGATTGGATTTATTGTTGCACGGGTCAGCTTGTGTTGGTGTGTGTGTGTGTAACGCAACACACTGTACGACCGCGAGAT ]
[-] EMBL CNS09OOP [ TGTCGCTGCAGTGATGATGTGTGCAGCTCCCAGTAAAGCACCAAAGCCCCAACCTCCTTCGCCCTTGTACCTATAAACTGGCTTTTCTTGGGACGGCCTGCAAAGGTGCTTAAAAAGTCACCCGAGGAGAGAGGGCTTAACAGATAGACTGATAGCGCAGTAAGGCGACTACAACTGGTGCGTGGTGACTCCCCGAGGATATCCCCCCAACGCGTGTAGATACTGTGTCAAGGCAGCTACGAGCTTTAGTGTACAATCGAACAAACAAAGGAAGCAAAAGAAGTAACGAGTCAATTCCCGCTAAAGGCTGTGATTGGATTTATTGTTGCACGGGTCAGCTTGTGTTGGTGTGTGTGTGTGTAACGCAACACACTGTACGACCGCGAGATGAAGCATTATTATATTTAGGGTGTTATAAGTGCAAGAGTGACGTAAATCAATTCCAGTTAGTATCAAGGTGTTGCAATGTATGTTCTTTACTGTAAGAAGAAGGTGTTTTACGAGGCAAATACACCCTCCCGTGGACCCGTCCAAGTTACTGCTACGTTTACTTTATCGAGGTGTAATAGGAGTGCACTCCATGATGTCTACTCTGAAGCAGAATGCACTCATCGTTGCCAAGTCCCACGAAAGCCCAGTGAAAAACAACTCACCACGACCGTTCAGTCGGCCGGCGGACCTGG GGTTGGAAAT ]
[-] EMBL CNS09BO9 [ GACCCCGAGATGAAGCATTATTATATTTAGGGTGTTATAAGTGCAAGAGTGACGTAAATCAATTCCAGTTAGTATCAAGGTGTTGCAATGTATGTTCTTTACTGTAAGAAGAAGGTGTTTTACGAGGGAAATACACCCTCCCGTGGACCCGTCCAAGTTACTG ]
[-] EMBL CNS09RC0 [ tTTTTTTTTAGGGTGTTATAAGTGCAAGAGTGACGTAAATCAATTCCAGTTAGTATCAAGGTGTTGCAATGTATGTTTTTTACTGTAAGAAGAAGGTGTTTTACGAGGCAAATACACCCTCCCGTGGACCCGTCCAAGTTACTGCTACGTTTACTTTATCGAGGTGTAATAGGAGTGCACTCCATGATGTCTACTTTGAAGCAGAATGCACTCATCGTTGCCAAGTCCCACGAAAGCCCAGTTAAAAACAACTCACCACGACCGTT ]
consensusID : consensus_7769#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence
[CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGATTTATTGTTGCACGGGTCAGCCTGTGTTGGTGTGTGTGTGTGTGTAACGCAACACACTGTACGACCGCGTGATGAAGCATTATTATATTTAGGGTGTTATAAGTGCAAGAGTGACGTAAATCAATTCCAGTTAGTATCAAGGTGTTGCAATGCATGTTCTTTACCGTAAGAAGAAGGTGTTTTACGAGGCGAATATACCCTCCCGTCGACCCGTCCAAGTTACTGCTACGTTTACTTTATCGAGGTGTAATAGGAGCGCACTCCATGATGTCTACTCTGAAGCAGAATGCACTCATCGTTGCCAAGTCCCACGAAAGCCCAGTGAAAAACAACTCACCACGACCGTTCAGTCGGCCGGCGGACCTGGAGGGTGGAAACATTTCCGATCGGTTGGGCAAGATCAAGACGTCGTCGGAAAATTGGAAAAATCGTGTCGAACTCTCCGATGCGACCAACTTCACCGTTGCGGGCCGGCTGCCCGCAACCAAATCGCCCAAGCTACCGTTCATCAAGTCGGACACGAAGCAATCGCCCGCGATGAACGTGTTCCGCAGCGTTAACCCACCGCAGCTCGGCCTGTCCAAGAGTCCCTCGATGATGGTGTCCTCCGTGGTCACTTCCTCGACCGTTTACGGACAGCAGCCACCG]
[+] EMBL BM602948 [CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGATTTATTGTTGCACGGGTCAGCCTGTGTTGGTGTGTGTGTGTGTGTAACGCAACACACTGTACGACCGCGTGATGAAGCATTATTATATTTAGGGTGTTATAAGTGCAAGAGTGACGTAAATCAATTCCAGTTAGTATCAAGGTGTTGCAATGCATGTTCTTTACCGTAAGAAGAAGGTGTTTTACGAGGCGAATATACCCTCCCGTCGACCCGTCCAAGTTACTGCTACGTTTACTTTATCGAGGTGTAATAGGAGCGCACTCCATGATGTCTACTCTGAAGCAGAATGCACTCATCGTTGCCAAGTCCCACGAAAGCCCAGTGAAAAACAACTCACCACGACCGTTCAGTCGGCCGGCGGACCTGGAGGGTGGAAACATTTCCGATCGGTTGGGCAAGATCAAGACGTCGTCGGAAAATTGGAAAAATCGTGTCGAACTCTCCGATGCGACCAACTTCACCGTTGCGGGCCGGCTGCCCGCAACCAAATCGCCCAAGCTACCGTTCATCAAGTCGGACACGAAGCAATCGCCCGCGATGAACGTGTTCCGCAGCGTTAACCCACCGCAGCTCGGCCTGTCCAAGAGTCCCTCGATGATGGTGTCCTCCGTGGTCACTTCCTCGACCGTTTACGGACAGCAGCCACCG]
consensusID : consensus_7769#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence
[CCGCTGGTCAATAATGCACTCATCGTTGCCAAGTCCCACGAAAGCCCAGTGAAAAACAACTCACCACGACCGTTCAGTCGGCCGGCGGACCTGGAGGGTGGAAACATTTCCGATCGGTTGGGCAAGATCAAGACGTCGTCGGAAAATTGGAAAAATCGTGTCGAACTCTCCGATGCGACCAACTTCACCGTTGCGGGCCGGCTGCCCGCAACCAAATCGCCCAAGCTACCGTTCATCAAGTCGGACACGAAGCAATCGCCCGCGATGAACGTGTTCCGCAGCGTTAACCCACCGCAGCTCGGCCTGTCCAAGAGCCCCTCGATGATGGTGTCCTCCGTGGTCACTTCCTCGACCGTTTACGGACAGCAGCCACCGACGGCGGCAGCGCCGCCAGCATTCGGTGCACGCCCTACCAGCGTTCCGGCGCCCCAATTTTCTAGTCCCGCTCCGGCAATGT]
[+] EMBL BM604872 [CCGCTGGTCAATAATGCACTCATCGTTGCCAAGTCCCACGAAAGCCCAGTGAAAAACAACTCACCACGACCGTTCAGTCGGCCGGCGGACCTGGAGGGTGGAAACATTTCCGATCGGTTGGGCAAGATCAAGACGTCGTCGGAAAATTGGAAAAATCGTGTCGAACTCTCCGATGCGACCAACTTCACCGTTGCGGGCCGGCTGCCCGCAACCAAATCGCCCAAGCTACCGTTCATCAAGTCGGACACGAAGCAATCGCCCGCGATGAACGTGTTCCGCAGCGTTAACCCACCGCAGCTCGGCCTGTCCAAGAGCCCCTCGATGATGGTGTCCTCCGTGGTCACTTCCTCGACCGTTTACGGACAGCAGCCACCGACGGCGGCAGCGCCGCCAGCATTCGGTGCACGCCCTACCAGCGTTCCGGCGCCCCAATTTTCTAGTCCCGCTCCGGCAATGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7769#1 ------------CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGATTTATTGTTG 48
consensus_7769#2 ------------------------------------------------------------
consensus_7769#0 GACGAAAAGACGACGGTTGATGGAGCGGAACACGAACCGGAAGTGGTACTGCGCAAATCG 60
consensus_7769#1 CACGGGTCAGCCTGTGTTGGTGTGTGTGTGTGTGTAACGCAACACACTGTACGACCGCGT 108
consensus_7769#2 ------------------------------------------------------------
consensus_7769#0 AAACCTACCGCGACGCCCGCCACCTATCGCAATGCCGTCGATAACATTGAGCAAATCCTA 120
consensus_7769#1 GATGAAGCATTATTATATTTAGGGTGTTATAAGTGCAAGAGTGACGTAAATCAATTCCAG 168
consensus_7769#2 ------------------------------------------------------------
consensus_7769#0 ATTGCGGAGAACCTATCGAAAGACTACTGGAAGTACTCCATCTCGAACCTGCTGGACAGC 180
consensus_7769#1 TTAGTATCAAGGTGTTGCAATGCATGTTCTTTACCGTAAGAAGAAGGTGTTTTACGAGGC 228
consensus_7769#2 ------------------------------------------------------------
consensus_7769#0 ATGGAGGAGGACGGTGGTATCGTGTCGCTGCAGTGATGATGTGTGCAGCTCCCAGTAAAG 240
consensus_7769#1 GAATATACCCTCCCGTCGACCCGTCCAAGTTACTGCTACGTTTACTTTATCGAGGTGTAA 288
consensus_7769#2 ------------------------------------------------------------
consensus_7769#0 CACCAAAGCCCCAACCTCCTTCGCCCTTGTACCTATAAACTGGCTTATCTTGGGACGGCC 300
consensus_7769#1 TAGGAGCGCACTCCATGATGTCTACTCTGAAGCA-----GAATGCACTCATCGTTGCCA- 342
consensus_7769#2 -----------------------CCGCTGGTCAA-----TAATGCACTCATCGTTGCCA- 31
consensus_7769#0 TGCAAAGGTGCTTAAAAAGTCACCCGAGGAGAGAGGGCTTAACAGATAGACTGATAGCGC 360
* * * ** * * * * *
consensus_7769#1 AGTCCCACGAAAGCC--CAGTGAAAAACAACTCACCACGACCGTTCAGTCGGCCGGCGGA 400
consensus_7769#2 AGTCCCACGAAAGCC--CAGTGAAAAACAACTCACCACGACCGTTCAGTCGGCCGGCGGA 89
consensus_7769#0 AGTAAGGCGACTACCACTGGTGCGTGGTGACTCCCCGAGGATATCCACCCAACGCGTGTA 420
*** *** ** *** **** ** * * ** * * * * *
consensus_7769#1 CCTGGAGGGTGGAAACATTTCCGATCGGTTGGGCAAGATCAAGACGTCGTCGGAAA-ATT 459
consensus_7769#2 CCTGGAGGGTGGAAACATTTCCGATCGGTTGGGCAAGATCAAGACGTCGTCGGAAA-ATT 148
consensus_7769#0 GATACTGTGTCAAGGCAGCTACGAGCTTTAGTGTACAATCGAACAAACAAAGGAAGCAAA 480
* * ** * ** * *** * * * * * *** * * **** *
consensus_7769#1 GGAAAAATCGTGTCGAACTCTCCGA-----TGCGACCAACTTCACCGTTGC--GGGCCGG 512
consensus_7769#2 GGAAAAATCGTGTCGAACTCTCCGA-----TGCGACCAACTTCACCGTTGC--GGGCCGG 201
consensus_7769#0 AGAAGTAACGAGTCAATTCCCGCTAAAGGCTGTGATTGGATTTATTGTTGCACGGGTCAG 540
*** * ** *** * * * * ** ** ** * ***** *** * *
consensus_7769#1 CT---GCCCGCAACCAAATCGCCCAAGCTACCGTTCATCAAGTCG-GACACGAAGCAATC 568
consensus_7769#2 CT---GCCCGCAACCAAATCGCCCAAGCTACCGTTCATCAAGTCG-GACACGAAGCAATC 257
consensus_7769#0 CTTGTGTTGGTGTGTGTGTGTGTAACGCAACACACTGTACGACCGCGAGATGAAGCATTA 600
** * * * * ** ** * ** ** * ****** *
consensus_7769#1 GCCCGCGATGAACGTGTTC--CGCAGCGTTAACCCACCGCAGCTC-GGCCTGTCCAAGAG 625
consensus_7769#2 GCCCGCGATGAACGTGTTC--CGCAGCGTTAACCCACCGCAGCTC-GGCCTGTCCAAGAG 314
consensus_7769#0 TTATATTTAGGGTGTTATAAGTGCAAGAGTGACGTAAATCAATTCCAGTTAGTATCAAGG 660
* ** * *** * ** * ** ** * ** * *
consensus_7769#1 TCCCTCGATG-ATGGTGTCCTCCGTGGTCACTTCCTCGACCGTTTACGGACAGCAGCCAC 684
consensus_7769#2 CCCCTCGATG-ATGGTGTCCTCCGTGGTCACTTCCTCGACCGTTTACGGACAGCAGCCAC 373
consensus_7769#0 TGTTGCAATGTATGTTCTTTACTGTAAGAAGAAGGTGTTTTACGAGGCAAATACACCCTC 720
* *** *** * * * ** * * * ** ** *
consensus_7769#1 CG---------------------------------------------------------- 686
consensus_7769#2 CGACGGCGGCAGCGCCGCCAGCATTCGGTGCACGCCCTACCAGCGTTCCGGCGCCCCAAT 433
consensus_7769#0 CCGTGGACCCGTCCAAGTTACTGCTACGTTTACTTTATCGAGGTGTAATAGGAGTGCACT 780
*
consensus_7769#1 ------------------------------------------------------------
consensus_7769#2 TTTCTAGTCCCGCTCCG--GCAATGT---------------------------------- 457
consensus_7769#0 CCATGATGTCTACTCTGAAGCAGAATGCACTCATCGTTGCCAAGTCCCACGAAAGCCCAG 840
consensus_7769#1 ------------------------------------------------------------
consensus_7769#2 ------------------------------------------------------------
consensus_7769#0 TGAAAAACAACTCACCACGACCGTTCAGTCGGCCGGCGGACCTGGAGGGTGGAAATAAAA 900
consensus_7769#1 ------------------------
consensus_7769#2 ------------------------
consensus_7769#0 AAAAAAAAAAAAAAAAAAGGCCCC 924
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||