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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7775#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1057 fasta sequence
[TGGGTAAGAGGAAAGCGGGAGAAACATTGTTCGAAATCATTGATTAATTCGCTTTTTTTATTTCTTACACAAACACAACTGGTTACTTGTTTTTCCGATCGATCATTCTACCGATTGAGGTAGGAGAACGGAATGTTACGGGAAAAACAACAGTACCATCATCACTTCACAAGTTCACATAAGGTACGATAAGTAAGAACAATAGTTAAAGTACTAATACGTCTATTATCCGCTTCACACATATACAGGGAGCACACTGCTAAGTGCTTCAATAATAGAGAATCCTTTTTTAACTGGTAGGACAACACAGAAACACACACACACACACAAATTAGGGCTCCAAAGGGTCTGTATCTTATCTTCCGGCATACGAAACCTAAGTCTACTCCATACATCAACCTTAACCGTTATACAACACTACATCAACACTTATCAGCAAACATAACCATAGGAAGAGATGGTCTGAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAGTAGGGCTAGAGTATAAAAA--AACATTAAAGTAAATTACGAAAGGAAGGGGAACGCTTTAAAAGGATCCACGATTCACTCATATACTGAAAATGATGGTACACATTGATGCAATTATGGTTTTTGCTGTTTTGTCGCGCTAGGCATAGGCAGAAGAGAAGCGGAGAGAAACAAAACAAAACAAACAAACAAGCATGAAGACGATTTCGTGTTCTGCATTGGCATTGGCGTTTTTTTTTAGCTCTTTAAAAAGCATCCAAGCAGTGTAGTACACACTTATTATGAATTATTATTATGATTATTATAATTATAACGATTACCTTTAATGTACGATCACTACCAGAGCTCTAGTGTTCGATCGCGGTGGAATGGAAGCATTACTCCTGTGTGATTGATGATGGCCACGCGGTGGCTCCGGAAACCCGTAAGCGGCCATGTTTGGATGTTCTCTAAGAACGATGATTTATGAAAATTGAATCCCGGGAAAAAGGNGGTGGTGATGACCGTTTGTGGAGCATGGACGAATACCGGAGGTAGTGTGTGTGCGTGTGTGTGTGGCCACT]
[+] EMBL BX608993 [TGGGTAAGAGGAAAGCGGGAGAAACATTGTTCGAAATCATTGATTAATTCGCTTTTTTTATTTCTTACACAAACACAACTGGTTACTTGTTTTTCCGATCGATCATTCTACCGATTGAGGTAGGAGAACGGAATGTTACGGGAAAAACAACAGTACCATCATCACTTCACAAGTTCACATAAGGTACGATAAGTAAGAACAATAGTTAAAGTACTAATACGTCTATTATCCGCTTCACACATATACAGGGAGCACACTGCTAAGTGCTTCAATAATAGAGAATCCTTTTTTAACTGGTAGGACAACACAGAAACACACACACACACACAAATTAGGGCTCCAAAGGGTCTGTATCTTATCTTCCGGCATACGAAACCTAAGTCTACTCCATACATCAACCTTAACCGTTATACAACACTACATCAACACTTATCAGCAAACATAACCATAGGAAGAGATGGTCTGAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAGTAGGGCTAGAGTATAAAAA AACATTAAAGTAAATTACGAAAGGAAGGGGAACGCTTTAAAAGGATCCACGATTCACTCATATACTGAAAATGATGGTACACATTGATGCAATTATGGTTTTTGCTGTTTTGTCGCGCTAGGCATAGGCAGAAGAGAAGCGGAGAGAAACAAAACATAACAAACAAACAAGCATGAAGACGATTTCG ]
[+] EMBL BX627808 [ AAGTGCTTCAATAATAGAGAATCCTTTTTTAACTGGTAGGACAACACAGAAACACACACACACACACAAATTAGGGCTCCAAAGGGTCTGTATCTTATCTTCCGGCATACGAAACCTAAGTCTACTCCATACATCAACCTTAACCGTTATACAACACTACATCAACACTTATCAGCAAACATAACCATAGGAAGAGATGGTCTGAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAGTAGGGCTAGAGTATAAAAA AACATTAAAGTAAATTACGAAAGGAAGGGGAACGCTTTAAAAGGATCCACGATTCACTCATATACTGAAAATGATGGTACACATTGATGCAATTATGGTTTTTGCTGTTTTGTCGCGCTAGGCATAGGCAGAAGAGAAGCGGAGAGAAACAAAACAAAACAAACAAACAAGCATGAAGACGATTTCGTGTTCTGCATTGGCATTGGCGTTTTTTTTTAGCTCTTTAAAAAGCATCCAAGCAGTGTAGTACACACTTATTATGAATTATTATTATGATTATTATAATTATAACGATTACCTTTAATGTACGATCACTACCAGAGCTCTAGTGTTCGATCGCGGTGGAATGGAAGCATTACTCCTGTGTGATTGATGATGGCCACGCGGTGGCTCCGGAAACCCGTAAGCGGCCATGTTTGGATGTTCTCTAAGAACGATGATTTATGAAAATTGAATCCCGGGAAAAAGGNGGTGGTGATGACCGTTTGTG ]
[+] EMBL BX621573 [ ACACACACACAAATTAGGGCTCCAAAGGGTCTGTATCTTATCTTCCGGCATACGAAACCTAAGTCTACTCCATACATCAACCTTAACCGTTATACAACACTACATCAACACTTATCAGCAAACATAACCATAGGAAGAGATGGTCTGAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAGTAGGGCTAGAGTATAAAAA AACATTAAAGTAAATTACGAAAGGAAGGGGAACGCTTTAAAAGGATCCACGATTCACTCATATACTGAAAATGATGGTACACATTGATGCAATTATGGTTTTTGCTGTTTTGTCGCGCTAGGCATAGGCAGAAGAGAAGCGGAGAGAAACAAAACAAAACAAACAAACAAGCATGAAGACGATTTCGTGTTCTGCATTGGCATTGGCGTTTTTTTTTAGCTCTTTAAAAAGCATCCAAGCAGTGTAGTACACACTTATTATGAATTATTATTATGATTATTATAATTATAACGATTACCTTTAATGTACGATCACTACCAGAGCTCTAGTGTTCGATCGCGGTGGAATGGAAGCATTACTCCTGTGTGATTGATGATGGCCACGCGGTGGCTCCGGAAACCCGTAAGCGGCCATGTTTGGATGTTCTCTAAGAACGATGATTTATGAAAATTGAATCCCGGGAAAAAGGTGGTGGTGATGACCGTTTGTGGAGCATGGACGAATACCGGAGGTAGTGTGTGTGCGTGTGTGTGTGGCCACT]
[+] EMBL BX621908 [ GCTCCAAAGGGTCTGTATCTTATCTTCCGGCATACGAAACCTAAGTCTACTCCATACATCAACCTTAACCGTTATACAACACTACATCAACACTTATCAGCAAACATAACCATAGGAAGAGATGGTCTGA AGAGAGAGAGAGAGAGAAAGAGAGAAGTAGGGCTAGAGTATAAAAAATAACATTAAAGTAAATTACGAAAGGAGGGGGAACGCTTTAAAAGGATCCACGATTCACTCATATATTGAAAATGATGGTACACATTGATGCAATTATGGTTTTTGCTGTTTTGTCGCGGTAGGCATAGGCAGAAGAGAAGCGGAGAGAAACAAAACAAAACAAACAAACAAGCATGAAGACGATTTCGTGTTCTGCATTGGCATTGGCG TTTTTTGTAGCTCTTTAAAAAGCATCCAAGCAGTGTAGTACACACTTATTATGAATTATTATTATGATTATTATAATTATAACGATTACCTTTAATGTACGATCACTACCAGAGCTCTAGTGTTCGATCGCGGTGGAATGGAAGCATTACTGCTGTGTGATTGATGATGGCCACGCGGTGGCTCCGGAAACCCGTAAGCGGNCATGTTTGGATGTTCTCTAAGAACGATGATTTATGAAAATTGAATCCCGGGAAAAAGGNGGTGGTGATGACCGTTTGTGGAGCATGGACGAAT ]
[+] EMBL BX610718 [ TTAAAAGGATCCACGATTCACTCATATACTGAAAATGATGGTACACATTGATGCAATTATGGTTTTTGCTGTTTTGTCGCGCTAGGCATAGGCAGAAGAGAAGCGGAGAGAAACAAAACAAAACAAACAAACAAGCATGAAGACGATTTCGTGTTCTGCATTGGCATTGGCGTTTTTTTTTAGCTCTTTAAAAAGCATCCAAGCAGTGTAGTACACACTTATTATGAATTATTATTATGATTATTATAATTATAACGATTACCTTTAATGTACGATCACTACCAGAGCTCTAGTGTTCGATCGCGGTGGAATGGAAGCATTACTCCTGTGTGATTGATGATGGCCACGCGGTGGCTCCGGAAACCCGTAAGCGGCCATGTTTGGATGTTCTCTAAGAACGATGATTTATGAAAATTGAATCCCGGGAAAAAGGTGGTGGTGATGACCGTTTGTGGAGCATGGACGAATA CGGAGGTAGTGTGTGTGCGTGTGTGTGTGGCC ]
[+] EMBL BX610719 [ CACGATTCACTCATATACTGAAAATGATGGTACACATTGATGCAATTATGGTTTTTGCTGTTTTGTCGCGCTAGGCATAGGCAGAAGAGAAGCGGAGAGAAACAAAACAAAACAAACAAACAAGCATGAAGACGATTTCGTGTTCTGCATTGGCATTGGCGTTTTTTTTTAGCTCTTTAAAAAGCATCCAAGCAGTGTAGTACACACTTATTATGAATTATTATTATGATTATTATAATTATAACGATTACCTTTAATGTACGATCACTACCAGAGCTCTAGTGTTCGATCGCGGTGGAATGGAAGCATTACTCCTGTGTGATTGATGATGGCCACGCGGTGGCTCCGGAAACCCGTAAGCGGCCATGTTTG ]
consensusID : consensus_7775#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 768 fasta sequence
[CAGAATCCCCCGCGGTTATTTCTTTGGAAAACTTTGCTAGTAGATTAGCAGAAAGATGGGTAAGAGGAAAGCGGGAGAAACATTGTTCGAAATCATTGATTAATTCGCTTTTTTTATATTCTTACACAAACACAACTGGTTACTTGTTTTTTTCCGATCGATCATTCTACCGATTGAGGTAGGAGAACGGAATGTTACGGGAAAAACAACAGTACCATCATCATTCACAAGTTCACATAAGGTACGATAAGTAAGAACAATAGTTANCGTACTAATACGTCTATTATCCGTTCACACATATACAGGGAGACACACATGANTAAGTGCTTCANATAATAGCAGAATCCTTATTANACTGGTAGGACCAANCACAGAACAACACAAACACACACCACATTCAGGCTCCAAAGGGTCTGGANTCTCTATCATTCCGGCNTCCGNNACACCTAANGTCTTACTCCATACATACAAACCCTTAACCGTNATACNAACACATACATTCAAACAATATNAATCAACAANAAACCTTAACCCAATAACAGCACACNAGNNTAGNGNCTGNACAAGACGACGCANGCNANCGANNACGAAGAATGCAAAAACGAAGAAAGCAAAAGTAAAGAGGCTANACGACGTAATTACNACACAANACCATTTCACCANGNTGTCCCCACAACAAAAGACGNGCAGGACAGCAAANNGACGGAATCNGTACCCACAATAAANGGCNGATGTCAATNAACTTTCCAAAACCATTGGTCGTAACAT]
[+] EMBL AL692232 [CAGAATCCCCCGCGGTTATTTCTTTGGAAAACTTTGCTAGTAGATTAGCAGAAAGATGGGTAAGAGGAAAGCGGGAGAAACATTGTTCGAAATCATTGATTAATTCGCTTTTTTTATATTCTTACACAAACACAACTGGTTACTTGTTTTTTTCCGATCGATCATTCTACCGATTGAGGTAGGAGAACGGAATGTTACGGGAAAAACAACAGTACCATCATCATTCACAAGTTCACATAAGGTACGATAAGTAAGAACAATAGTTANCGTACTAATACGTCTATTATCCGTTCACACATATACAGGGAGACACACATGANTAAGTGCTTCANATAATAGCAGAATCCTTATTANACTGGTAGGACCAANCACAGAACAACACAAACACACACCACATTCAGGCTCCAAAGGGTCTGGANTCTCTATCATTCCGGCNTCCGNNACACCTAANGTCTTACTCCATACATACAAACCCTTAACCGTNATACNAACACATACATTCAAACAATATNAATCAACAANAAACCTTAACCCAATAACAGCACACNAGNNTAGNGNCTGNACAAGACGACGCANGCNANCGANNACGAAGAATGCAAAAACGAAGAAAGCAAAAGTAAAGAGGCTANACGACGTAATTACNACACAANACCATTTCACCANGNTGTCCCCACAACAAAAGACGNGCAGGACAGCAAANNGACGGAATCNGTACCCACAATAAANGGCNGATGTCAATNAACTTTCCAAAACCATTGGTCGTAACAT]
consensusID : consensus_7775#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 364 fasta sequence
[NTTACTTGTTTTNTCCGATCGATCATTCTACTGATTGAGGTAGGAGAACGGAATGTTACGGGNAAAAACAACAGTACCATCATCACNTTCACAAGTNTCACATAAGGTACGATAAGTAAGAACAATAGTTAAAGTACTAACTACGTCTATTNATCCGCTGTCACACATATACAGGGAGCACACTGCTAAGTGCTCCAGTAATAGAGAATCCTTNTTTNTAACTGGTAGGACAACACAGCAAACACACACACNNCATAATGAGGGCTCCAAAGGGTCTGTATCTCATCTCCCNGCATACGAAACCTAAGTCTACTCCATACATCAACCTTTAACCGGTTATACAAACACTAACATCAACCACTTA]
[+] EMBL BX619423 [NTTACTTGTTTTNTCCGATCGATCATTCTACTGATTGAGGTAGGAGAACGGAATGTTACGGGNAAAAACAACAGTACCATCATCACNTTCACAAGTNTCACATAAGGTACGATAAGTAAGAACAATAGTTAAAGTACTAACTACGTCTATTNATCCGCTGTCACACATATACAGGGAGCACACTGCTAAGTGCTCCAGTAATAGAGAATCCTTNTTTNTAACTGGTAGGACAACACAGCAAACACACACACNNCATAATGAGGGCTCCAAAGGGTCTGTATCTCATCTCCCNGCATACGAAACCTAAGTCTACTCCATACATCAACCTTTAACCGGTTATACAAACACTAACATCAACCACTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7775#0 --------------------------------------------------------TGGG 4
consensus_7775#2 ------------------------------------------------------------
consensus_7775#1 CAGAATCCCCCGCGGTTATTTCTTTGGAAAACTTTGCTAGTAGATTAGCAGAAAGATGGG 60
consensus_7775#0 TAAGAGGAAAGCGGGAGAAACATTGTTCGAAATCATTGATTAATTCGCTTTTTTTAT-TT 63
consensus_7775#2 ------------------------------------------------------------
consensus_7775#1 TAAGAGGAAAGCGGGAGAAACATTGTTCGAAATCATTGATTAATTCGCTTTTTTTATATT 120
consensus_7775#0 CTTACACAAACACAACTGGTTACTTGTTTTT--CCGATCGATCATTCTACCGATTGAGGT 121
consensus_7775#2 ------------------NTTACTTGTTTTNT-CCGATCGATCATTCTACTGATTGAGGT 41
consensus_7775#1 CTTACACAAACACAACTGGTTACTTGTTTTTTTCCGATCGATCATTCTACCGATTGAGGT 180
*********** ***************** *********
consensus_7775#0 AGGAGAACGGAATGTTACGGGAAAAA-CAACAGTACCATCATCACTT-CACAAGTT-CAC 178
consensus_7775#2 AGGAGAACGGAATGTTACGGGNAAAAACAACAGTACCATCATCACNTTCACAAGTNTCAC 101
consensus_7775#1 AGGAGAACGGAATGTTACGGGAAAAA-CAACAGTACCATCATCATT--CACAAGTT-CAC 236
********************* **** ***************** ******* ***
consensus_7775#0 ATAAGGTACGATAAGTAAGAACAATAGTTAAAGTACTAA-TACGTCTATTA-TCCGCT-T 235
consensus_7775#2 ATAAGGTACGATAAGTAAGAACAATAGTTAAAGTACTAACTACGTCTATTNATCCGCTGT 161
consensus_7775#1 ATAAGGTACGATAAGTAAGAACAATAGTTANCGTACTAA-TACGTCTATTA-TCCGTT-- 292
****************************** ******* ********** **** *
consensus_7775#0 CACACATATACAGGGAG---CACACTGCTAAGTGCTTCAA-TAATAG-AGAATCCTTTTT 290
consensus_7775#2 CACACATATACAGGGAG---CACACTGCTAAGTGCTCCAG-TAATAG-AGAATCCTTNTT 216
consensus_7775#1 CACACATATACAGGGAGACACACATGANTAAGTGCTTCANATAATAGCAGAATCCTTATT 352
***************** **** ******** ** ****** ********* **
consensus_7775#0 TA--ACTGGTAGGAC--AACACAGAAACACACACACACACACAA-ATTAGGGCTCCAAAG 345
consensus_7775#2 TNTAACTGGTAGGAC--AACACAGCAA-ACACACACACNNCATA-ATGAGGGCTCCAAAG 272
consensus_7775#1 AN--ACTGGTAGGACCAANCACAGAACAACACAAACACACACCACATTCAGGCTCCAAAG 410
*********** * ***** * ***** **** * ** **********
consensus_7775#0 GGTCTGTATCTT--ATC-TTCCGGCATACGAAAC--CTAAG--TCTACTCCATACATC-- 396
consensus_7775#2 GGTCTGTATCTC--ATC-TCCCNGCATACGAAAC--CTAAG--TCTACTCCATACATC-- 323
consensus_7775#1 GGTCTGGANTCTCTATCATTCCGGCNTCCGNNACACCTAANGTCTTACTCCATACATACA 470
****** * *** * ** ** * ** ** **** ************
consensus_7775#0 AACCTT-AACCG-TTATACAA-CACTA-CATCAAC-ACTTATCAGCAAACATAACCATAG 451
consensus_7775#2 AACCTTTAACCGGTTATACAAACACTAACATCAACCACTTA------------------- 364
consensus_7775#1 AACCCTTAACCG-TNATACNAACACATACATTCA------AACAATATNAATCA--ACAA 521
**** * ***** * **** * *** *** * *
consensus_7775#0 GAAGAGATGGTCTGAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAGTAGGGCTAGAGTAT 511
consensus_7775#2 ------------------------------------------------------------
consensus_7775#1 NAAACCTTAACCCAATAACAGCACACNAGNNTAGNGNCTGNACAAGACGACGCANGCNAN 581
consensus_7775#0 AAAAAAACATTAAAGTAAATTACGAAAGGAAGGGGAACGCTTTAAAAGGATCCACGATTC 571
consensus_7775#2 ------------------------------------------------------------
consensus_7775#1 CGANNACGAAGAATGCAAAA-ACGAA--GAAAGCAAAAG--TAAAGAGGCTANACGACGT 636
consensus_7775#0 ACTCATATACTGAAAATGATGGTACACATTGATGCAATTATGGTTTTTGCTGTTTTGTCG 631
consensus_7775#2 ------------------------------------------------------------
consensus_7775#1 AATTACN-ACACAANACCAT--TTCACCANGNTGTCCCCACAACAAAAGACGN---GCAG 690
consensus_7775#0 CGCTAGGCATAGGCAGAAGAGAAGCGGAGAGAAACAAAACAAAACAAACAAACAAGCATG 691
consensus_7775#2 ------------------------------------------------------------
consensus_7775#1 GACAGCAAANNGACGGAATCNGTACCCACAATAAANGGCNGATGTCAATNAACTTTC--C 748
consensus_7775#0 AAGACGATTTCGTGTTCTGCATTGGCATTGGCGTTTTTTTTTAGCTCTTTAAAAAGCATC 751
consensus_7775#2 ------------------------------------------------------------
consensus_7775#1 AAAACCATTGGTCGTAACAT---------------------------------------- 768
consensus_7775#0 CAAGCAGTGTAGTACACACTTATTATGAATTATTATTATGATTATTATAATTATAACGAT 811
consensus_7775#2 ------------------------------------------------------------
consensus_7775#1 ------------------------------------------------------------
consensus_7775#0 TACCTTTAATGTACGATCACTACCAGAGCTCTAGTGTTCGATCGCGGTGGAATGGAAGCA 871
consensus_7775#2 ------------------------------------------------------------
consensus_7775#1 ------------------------------------------------------------
consensus_7775#0 TTACTCCTGTGTGATTGATGATGGCCACGCGGTGGCTCCGGAAACCCGTAAGCGGCCATG 931
consensus_7775#2 ------------------------------------------------------------
consensus_7775#1 ------------------------------------------------------------
consensus_7775#0 TTTGGATGTTCTCTAAGAACGATGATTTATGAAAATTGAATCCCGGGAAAAAGGNGGTGG 991
consensus_7775#2 ------------------------------------------------------------
consensus_7775#1 ------------------------------------------------------------
consensus_7775#0 TGATGACCGTTTGTGGAGCATGGACGAATACCGGAGGTAGTGTGTGTGCGTGTGTGTGTG 1051
consensus_7775#2 ------------------------------------------------------------
consensus_7775#1 ------------------------------------------------------------
consensus_7775#0 GCCACT 1057
consensus_7775#2 ------
consensus_7775#1 ------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||