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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7776#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 839 fasta sequence
[CCGGCAGTTCAGTCTTGTGCCGTTCGCAGAAACGGCCGGAGCCCAGCCACCGGTGGCGAGCTAGAAAACGCGGAAAACATTCGGAACTCTCCTTCCTTCCAGGAGATTAGTGCTACTTCCGCTAACAAGGCGCAACCAACGGGTACACCCAGATCCGTCCGCGCAATGGCGACCGCGAAGGATAGTGCGGTGATCGTGCGCCGGACGCAGCGGGACGATCTGCCGGAAGTGATCGCTATGATACAGGAGCTGGCTGACTTTGAGAAGATGCCGGACGGACCGCAGCTTACCGTGGACGATCTGATACGGGACGGTGGATTCGACGGGCGGCAATCAGGCGATGGTGATGGTGGTGCCCCAGTGTTTCATAGTTTTGTGCTCGAAGCTACTGCCGATGCAGACGACCCGGACGGCCCGGCTAATCAGGAACAGCTACAAACGTCAATGCCGGGCCCGGCCAGCAAGCCAGCAAGACCTCTAACCCGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAGGAAAGTCGCTCGCACTGGAAGACATCTATATCCGGCCGGCCTACCGGGGCAACGGGTATGGGGAGCTGTTCTTCCGTGCCCTGGCCAAGCATGCAAAGGAAAGCCGCTGCT-CCAGGGTGGATTTCCACGTGCTCAACTGGAACCCGGCCACCAAGTTTTATCGTCGTATGGGTGCGCTGTATTTAACCGAAACCGAGAGTTGGCACTTTTATCGGTTGCAAAAGGATGCCATCGATCAGCTGCTGGCAGATGATCGGCAGTAGGAAAGAAGGGATCGGCTTTGCATAGGAATCAAGTGTCAAGT]
[+] EMBL BM655333 [CCGGCAGTTCAGTCTTGTGCCGTTCGCAGAAACGGCCGGAGCCCAGCCACCGGTGGCGAGCTAGAAAACGCGGAAAACATTCGGAACTCTCCTTCCTTCCAGGAGATTAGTGCTACTTCCGCTAACAAGGCGCAACCAACGGGTACACCCAGATCCGTCCGCGCAATGGCGACCGCGAAGGATAGTGCGGTGATCGTGCGCCGGACGCAGCGGGACGATCTGCCGGAAGTGATCGCT ]
[+] EMBL BM579583 [ cCGCAGAAACGGCCGGAGCCCAGCCACCGGTGGCGAGCTAGAAAACGCGGAAAACATTCGGAACTCTCCTTCCTTCCAGGAGATTAGTGCTACTTCCGCTAACAAGGCGCAACCAACGGGTACACCCAGATCCGTCCGCGCAATGGCGACCGCGAAGGATAGTGCGGTGATCGTGCGCCGGACGCAGCGGGACGATCTGCCGGAAGTGATCGCTATGATACAGGAGCTGGCTGACTTTGAGAAGATGCCGGACGGACCGCAGCTTACCGTGGACGATCTGATACGGGACGGTGGATTCGACGGGCGGCAATCAGGCGATGGTGATGGTGGTGCCCCAGTGTTTCATAGTTTTGTGCTCGAAGCTACTGCCGATGCAGACGACCCGGACGGCCCGGCTAATCAGGAACAGCTACAAACGTCAATGCCGGGCCCGGCCAGCAAGCCAGCAAGACCTCTAACCCGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAGGAAAGTCGCTCGCACTGGAAGACATCTATAT ]
[+] EMBL BM636757 [ ccgGAAACGGCCGGAGCCCAGCCACCGGTGGCGAGCTAGAAAACGCGGAAAACATTCGGAACTCTCCTTCCTTCCAGGAGATTAGTGCTACTTCCGCTAACAAGGCGCAACCAACGGGTACACCCAGATCCGTCCGCGCAATGGCGACCGCGAAGGATAGTGCGGTGCTCGTGCGCCGGACGCAGCGGGACGATCTGCCGGAAGTGATCGCTATGATACAGGAGCTGGCTGACTTTGAGAAGATGCCGGGCGGACCGCAGCTTACCGTGGACGATCTGATACGGGACGGTGGATTCGACGGGCGGCAATCAGTCGATGGTGATGGTGGTGCCCCAGTGTTTCATAGTTTTGTGCTCGAAGCTACTGCCGATGCAGACGACCCGGACGGCCCGGCTAATCAGGAACAGCTACAAACGTCAATGCCGGGCCCGGCCAGCAAGCCAGCAAGACCTCTAACCCGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAGGAAAGTCGCTCGCACTGGAAGACATCTATATCCGGCCGGCCTACCGGGGCAACGGGTATGGGGAGCTGTTCTTCCGTGCCCTGGCCAAGCATGCAAAGGAAAGCCGCTGCTCCCAGGGTGGATTTCCACGTGCTCAACTGGAACCCGGCCACCAAGTTTTATCGTCGTATGGGTGCGCTGTATTTAACCGAAACCGAGAGT ]
[+] EMBL BM652084 [ ccgAACGGCCGGAGCCCAGCCACCGGTGGCGAGCTAGAAAACGCGGAAAACATTCGGAACTCTCCTTCCTTCCAGGAGATTAGTGCTACTTCCGCTAACAAGGCGCAACCAACGGGTACACCCAGATCCGTCCGCGCAATGGCGACCGCGAAGGATAGTGCGGTGATCGTGCGCCGGACGCAGCGGGACGATCTGCCGGAAGTGATCGCTATGATACAGGAGCTGGCTGACTTTGAGAAGATGCCGGACGGACCGCAGCTTACCGTGGACGATCTGATACGGGACGGTGGATTCGACGGGCGGCAATCAGGCGATGGTGATGGTGGTGCCCCAGTGTTTCATAGTTTTGTGCTCGAAGCTACTGCCGATGCAGACGACCCGGACGGCCCGGCTAATCAGGAACAGCTACAAACGTCAATGCCGGGCCCGGCCAGCAAGCCAGCAAGACCTCTAACCCGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAGGAAAGTCGCTCGCACTGGAAGACATCTATATCCGGCCGGCCTACCGGGGCAACGGGTATGGGGAGCTGTTCTTCCGTGCCCTGGCCAAGCATGCAAAGGAAAGCC ]
[+] EMBL BX627077 [ CATTCGGAACTCTCCTTCCTTCCAGGAGATTAGTGCTACTTCCGCTAACAAGGCGCAACCAACGGGTACACCCAGATCCGTCCGCGCAATGGCGACCGCGAAGGATAGTGCGGTGATCGTGCGCCGGACGCAGCGGGACGATCTGCCGGAAGTGATCGCTATGATACAGGAGCTGGCTGACTTTGAGAAGATGCCGGACGGACCGCAGCTTACCGTGGACGATCTGATACGGGACGGTGGATTCGACGGGCGGCAATCAGGCGATGGTGATGGTGGTGCCCCAGTGTTTCATAGTTTTGTGCTCGAAGCTACTGCCGATGCAGACGACCCGGACGGCCCGGCTAATCAGGAACAGCTACAAACGTCAATGCCGGGCCCGGCCAGCAAGCCAGCAAGACCTCTAACCCGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAGGAAAGTCGCTCGCACTGGAAGACATCTATATCCGGCCGGCCTACCGGGGCAACGGGTATGGGGAGCTGTTCTTCCGTGCCCTGGCCAAGCATGCAAANGAAAGCCGCTGCT CCAGGGTGGATTTCCACGTGCTCAACTGGAACCCG ]
[+] EMBL BX605320 [ CGCAATGGCGACCGCGAAGGATAGTGCGGTGATCGTGCGCCGGACGCAGCGGGACGATCTGCCGGAAGTGATCGCTATGATACAGGAGCTGGCTGACTTTGAGAAGATGCCGGACGGACCGCAGCTTACCGTGGACGATCTGATACGGGACGGTGGATTCGACGGGCGGCAATCAGGCGATGGTGATGGTGGTGCCCCAGTGTTTCATAGTTTTGTGCTCGAAGCTACTGCCGATGCAGACGACCCGGACGGCCCGGCTAATCAGGAACAGCTACAAACGTCAATGCCGGGCCCGGCCAGCAAGCCAGCAAGACCTCTAACCCGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAGGAAAGTCGCTCGCACTGGAAGACATCTATATCCGGCCGGCCTACCGGGGCAACGGGTATGGGGAGCTGTTCTTCCGTGCCCTGGCCAAGCATGCAAAGGAAAGCCGCTGCT CCAGGGTGGATTTCCACGTGCTCAACTGGAACCCGGCCACCAAGTTTTATCGTCGTATGGGTGCGCTGGATTTAACCGAAGCCGAGAGTTGGCACTTTTATCGGTTGCAAAAGGATGCCATCGATCAGCTGCTGGCAGATGATCGGCAGTAGGAAAGAAGGGATCGGCTTTGCATAGGAATCAAGTGTCAAGT]
consensusID : consensus_7776#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 767 fasta sequence
[TCTTCTTGTTGTCCCGATGGCCGAACGACCCAGGGGCAGGGCGTCAGCGTGCCGTGCTCTCCAGCTCGGCGAAGGAATGTCAATCACGCATCGAGATTATACAAATGACAACCAATTACAATACAGTTTGGTTCACTCACAGCTCAATCATGCGATACTGCTGTCGTCATCATTAAAAATTAACTGCTCAATGACGACGCGAAAGGATCTTAAAGTTTCATCAATGTTTTTCTTTTCTTTCTTTGCCCATTATGCTTTATACAGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAGGAAAGTCGCTCGCACTGGAAGACATCTATATCCGGCCGGCCTACCGGGGCAACGGGTATGGGGAGCTGTTCTTCCGTGCCCTGGCCAAGCATGCAAAGGAAAGCCGCTGCTCCAGGGTGGATTTCCACGTGCTCAACTGGAACCCGGCCACCAAGTTTTATCGTCGTATGGGTGCGCTGGATTTAACCGAAGCCGAGAGTTGGCACTTTTATCGGTTGCAAAAGGATGCCATCGATCAGCTGCTGGCAGATGATCGGCAGTAGGAAAGAAGGGATCGGCTTTGCATAGGAATCAAGTGTCAAGTATTATCGAGAAATAGCAGGGCAGCACGGAGATGACCCGTTTGGTGTAATGATGAACGCGCCGGTTTCTGAGAAAACCCTTCCTTAGTTCGATTCCCATCCAGGACTATAATAGACTTTATAATTATTCGGTCTTTGTATTATAATTAAG]
[+] EMBL BX607434 [TCTTCTTGTTGTCCCGATGGCCGAACGACCCAGGGGCAGGGCGTCAGCGTGCCGTGCTCTCCAGCTCGGCGAAGGAATGTCAATCACGCATCGAGATTATACAAATGACAACCAATTACAATACAGTTTGGTTCACTCACAGCTCAATCATGCGATACTGCTGTCGTCATCATTAAAAATTAACTGCTCAATGACGACGCGAAAGGATCTTAAAGTTTCATCAATGTTTTTCTTTTCTTTCTTTGCCCATTATGCTTTATACAGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAGGAAAGTCGCTCGCACTGGAAGACATCTATATCCGGCCGGCCTACCGGGGCAACGGGTATGGGGAGCTGTTCTTCCGTGCCCTGGCCAAGCATGCAAAGGAAAGCCGCTGCTCCAGGGTGGATTTCCACGTGCTCAACTGGAACCCGGCCACCAAGTTTTATCGTCGTATGGGTGCGCTGGATTTAACCGAAGCCGAGAGTTGGCACTTTTATCGGTTGCAAAAGGATGCCATCGATCAGCTGCTGGCAGATGATCGGCAGTAGGAAAGAAGGGATCGGCTTTGCATAGGAATCAAGTGTCAAGTATTATCGAGAAATAGCAGGGCAGCACGGAGATGACCCGTTTGGTGTAATGATGAACGCGCCGGTTTCTGAGAAAACCCTTCCTTAGTTCGATTCCCATCCAGGACTATAATAGACTTTATAATTATTCGGTCTTTGTATTATAATTAAG]
consensusID : consensus_7776#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 526 fasta sequence
[ATNGCCGAGGCTGTTGTCCCGATGGCGAACGACCAGGGCAGGCGTCAGCGTGCGTGCTCTCCAGCTCGGCGAAGGAATGTCAATCACGCATCGAGATTATACAAATGACAACCAATTACAATACAGTTTGGTTCACTCACAGCTCAATCATGCGATACTGCTGTCGTCATCATTAAAAATTAACTGCTCAATGACGACGCGAAAGGATCTTAAAGTTTCATCAATGTTTTTCTTTTCTTTCTTTGCCCATTATGCTTTATACAGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAGGAAAGTCGCTCGCACTGGAAGACATCTATATCCGGCCGGCCTACCGGNGCAACGGGTATGGGGAGCTGTTCTTCCGTGCCCTGGCCAAGCATGCAAAGGAAAGCCGCTGCTCCAGGGTGGATTTCCACGTGCTCAACTGGAACCCGGCACCAAGTTCTATCGTCGTATGGGTGCGCTGGATTTAACCGAAGCCGAGAGTTGGCACTTTTATC]
[+] EMBL AL931788 [ATNGCCGAGGCTGTTGTCCCGATGGCGAACGACCAGGGCAGGCGTCAGCGTGCGTGCTCTCCAGCTCGGCGAAGGAATGTCAATCACGCATCGAGATTATACAAATGACAACCAATTACAATACAGTTTGGTTCACTCACAGCTCAATCATGCGATACTGCTGTCGTCATCATTAAAAATTAACTGCTCAATGACGACGCGAAAGGATCTTAAAGTTTCATCAATGTTTTTCTTTTCTTTCTTTGCCCATTATGCTTTATACAGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAGGAAAGTCGCTCGCACTGGAAGACATCTATATCCGGCCGGCCTACCGGNGCAACGGGTATGGGGAGCTGTTCTTCCGTGCCCTGGCCAAGCATGCAAAGGAAAGCCGCTGCTCCAGGGTGGATTTCCACGTGCTCAACTGGAACCCGGCACCAAGTTCTATCGTCGTATGGGTGCGCTGGATTTAACCGAAGCCGAGAGTTGGCACTTTTATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7776#1 ------------------------------------------------------------
consensus_7776#2 ------------------------------------------------------------
consensus_7776#0 CCGGCAGTTCAGTCTTGTGCCGTTCGCAGAAACGGCCGGAGCCCAGCCACCGGTGGCGAG 60
consensus_7776#1 ------------------------------------------------------------
consensus_7776#2 ------------------------------------------------------------
consensus_7776#0 CTAGAAAACGCGGAAAACATTCGGAACTCTCCTTCCTTCCAGGAGATTAGTGCTACTTCC 120
consensus_7776#1 ------------------------------------------------------------
consensus_7776#2 ------------------------------------------------------------
consensus_7776#0 GCTAACAAGGCGCAACCAACGGGTACACCCAGATCCGTCCGCGCAATGGCGACCGCGAAG 180
consensus_7776#1 ----TCTTC----TTGTTGTCCCGATG--GCCGAACGACCCAGGGGCAGGG--CGTCAGC 48
consensus_7776#2 ---ATNGCCGAGGCTGTTGTCCCGATG--GC-GAACGACC--AGGGCAGG---CGTCAGC 49
consensus_7776#0 GATAGTGCGGTGATCGTGCGCCGGACGCAGCGGGACGATCTGCCGGAAGTGATCGCTATG 240
** ** ** * ** * **** * ** ** ** *
consensus_7776#1 GTGCC-GTGCTCTCCAGCTCGGCGAAGGAATGTCAATCACGCATCGAGATTATACAAATG 107
consensus_7776#2 GTGC--GTGCTCTCCAGCTCGGCGAAGGAATGTCAATCACGCATCGAGATTATACAAATG 107
consensus_7776#0 ATACAGGAGCTGGCTGACTTTGAGAAG--ATGCCGG--ACGGACCGCAGCT-TACCGTGG 295
* * * *** * ** * **** *** * *** * ** * *** *
consensus_7776#1 ACAACCAATTACAATACAGTTTGGTTCACTCACAGC--TCAATCAT--GCGATACTGCTG 163
consensus_7776#2 ACAACCAATTACAATACAGTTTGGTTCACTCACAGC--TCAATCAT--GCGATACTGCTG 163
consensus_7776#0 ACGATCTGATACGGGACGGTGGATTCGACGGGCGGCAATCAGGCGATGGTGATGGTGGTG 355
** * * *** ** ** * ** * ** *** * * *** ** **
consensus_7776#1 TCGTCATCATTAAAAATTAACTGCTCAA------TGACGACGCGAAAGGATCTTAAAGTT 217
consensus_7776#2 TCGTCATCATTAAAAATTAACTGCTCAA------TGACGACGCGAAAGGATCTTAAAGTT 217
consensus_7776#0 CCCCAGTGTTTCATAGTTTTGTGCTCGAAGCTACTGCCGATGCAGACGACCCGGACGGCC 415
* * ** * * ** ***** * ** *** ** * * * * *
consensus_7776#1 TCATCAAT--------GTTTT-----TCTTTTCTTTCTTTGCCCATTATGC--------- 255
consensus_7776#2 TCATCAAT--------GTTTT-----TCTTTTCTTTCTTTGCCCATTATGC--------- 255
consensus_7776#0 CGGCTAATCAGGAACAGCTACAAACGTCAATGCCGGGCCCGGCCAGCAAGCCAGCAAGAC 475
*** * * ** * * * *** * **
consensus_7776#1 -TTTATACAGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAG 314
consensus_7776#2 -TTTATACAGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAG 314
consensus_7776#0 CTCTAACCCGCAAGCTGATCGGATACGCCATCTGCTACTACTCGTACTCGACCTGGCAAG 535
* ** * ***************************************************
consensus_7776#1 GAAAGTCGCTCGCACTGGAAGACATCTATATCCGGCCGGCCTACCGGGGCAACGGGTATG 374
consensus_7776#2 GAAAGTCGCTCGCACTGGAAGACATCTATATCCGGCCGGCCTACCGGNGCAACGGGTATG 374
consensus_7776#0 GAAAGTCGCTCGCACTGGAAGACATCTATATCCGGCCGGCCTACCGGGGCAACGGGTATG 595
*********************************************** ************
consensus_7776#1 GGGAGCTGTTCTTCCGTGCCCTGGCCAAGCATGCAAAGGAAAGCCGCTGCTCCAGGGTGG 434
consensus_7776#2 GGGAGCTGTTCTTCCGTGCCCTGGCCAAGCATGCAAAGGAAAGCCGCTGCTCCAGGGTGG 434
consensus_7776#0 GGGAGCTGTTCTTCCGTGCCCTGGCCAAGCATGCAAAGGAAAGCCGCTGCTCCAGGGTGG 655
************************************************************
consensus_7776#1 ATTTCCACGTGCTCAACTGGAACCCGGCCACCAAGTTTTATCGTCGTATGGGTGCGCTGG 494
consensus_7776#2 ATTTCCACGTGCTCAACTGGAACCCGGC-ACCAAGTTCTATCGTCGTATGGGTGCGCTGG 493
consensus_7776#0 ATTTCCACGTGCTCAACTGGAACCCGGCCACCAAGTTTTATCGTCGTATGGGTGCGCTGT 715
**************************** ******** *********************
consensus_7776#1 ATTTAACCGAAGCCGAGAGTTGGCACTTTTATCGGTTGCAAAAGGATGCCATCGATCAGC 554
consensus_7776#2 ATTTAACCGAAGCCGAGAGTTGGCACTTTTATC--------------------------- 526
consensus_7776#0 ATTTAACCGAAACCGAGAGTTGGCACTTTTATCGGTTGCAAAAGGATGCCATCGATCAGC 775
*********** *********************
consensus_7776#1 TGCTGGCAGATGATCGGCAGTAGGAAAGAAGGGATCGGCTTTGCATAGGAATCAAGTGTC 614
consensus_7776#2 ------------------------------------------------------------
consensus_7776#0 TGCTGGCAGATGATCGGCAGTAGGAAAGAAGGGATCGGCTTTGCATAGGAATCAAGTGTC 835
consensus_7776#1 AAGTATTATCGAGAAATAGCAGGGCAGCACGGAGATGACCCGTTTGGTGTAATGATGAAC 674
consensus_7776#2 ------------------------------------------------------------
consensus_7776#0 AAGT-------------------------------------------------------- 839
consensus_7776#1 GCGCCGGTTTCTGAGAAAACCCTTCCTTAGTTCGATTCCCATCCAGGACTATAATAGACT 734
consensus_7776#2 ------------------------------------------------------------
consensus_7776#0 ------------------------------------------------------------
consensus_7776#1 TTATAATTATTCGGTCTTTGTATTATAATTAAG 767
consensus_7776#2 ---------------------------------
consensus_7776#0 ---------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||