These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7779#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 909 fasta sequence [TTCTCCACCGCTCACGATGCGTCAGTTGCTTTGACAGGCACACT-TCTCTCTTTTTCCTCGTACGTCGGAGGAATCGCACGTGTGTATCGGAAAAAATGGGTCGCCGCCCGGCTCGGTGTTATCGTTACTGCAAAAACAAACCCTACCCGAAATCGCGCTTCTGTCGCGGTGTTCCGGATCCGAAAATCCGCATCTTCGATCTGGGCCGCAAGAAGGCATGCGTGGAGGACTTCCCGCTCTGCGTGCATCTCGTGTCGGACGAGTATGAGCAGCTCAGCTCGGAGGCGCTCGAGGCGGGCCGTATCTGCTGCAACAAGTATCT-GGTGAAGTTCTGCGGCAAGGACCAGTTCCACATCCGTATGCGCCTGCACCCGTTCCATGTGATCCGCATCAACAAGATGTTGTCCTGTGCCGGAGCTGATCGGCTCCAAACAGGAATGCGTGGTGCCTTCGGCAAACCGCAGGGTACGGTGGCTCGCGTCCACATCGGCCAGCCAATCATGTCGGTGCGCTCGAGCGACCGCTTCAAGGCGCAGGTCATCGAGGCGCTGCGTCGTGCCAAGTTCAAGTTCCCG-GGTCGCCAGAAGATCTTCGTCTCGAAGAAGTGGGGCTTCACCAAGTACGACCGCGACGTGTACCAGAAGCACAACGACGAGGGCCGTCTGGTGCCGGACGGATGCGGTGTCCAGTTCCGCAACGATCACGGTCCGCTGGTCAAATGGGAGCAGCATCAACGCAACCGTCTTTCGGCCTAAGTGCGCCT-CTTCGCCCTCGGGAAAGCGAGTTAGTTGCTGAAGCGTAACGACTTGCCGATTCTCTC-TTTTTGCGTGAAATAAAAAAAACACACACCTTCCTTGAAAC-AGAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGTTGGTTCCG] [+] EMBL CNS0979X [TTCTCCACCGCTCACGATGCGTCAGTTGCTTTGACAGGCACACA TTTCTCTTTTTCCTCGTACGTCGGAGGAATCGCACGTGTGTATCGGAAAAAATGGGTCGCCGCCCGGCTCGGTGTTATCGTTACTGCAAAAACAAACCCTACCCGAAATCGCGCTTCTGTCGCGGTGTTCCGGATCCGAAAATCCGCATCTTCGATCTGGGCCGCAAGAAGGCATGCGTGGAGGACTTCCCGCTCTGCGTGCATCTCGTGTCGGACGAGTATGAGCAGCTCAGCTCGGAGGCGCTCGAGGCGGGCCGTATCTGCTGCAACAAGTATCT GGTGAAGTTCTGCGGCAAGGACCAGTTCCACATCCGTATGCGCCTGCACCCGTTCCATGTGATCCGCATCAACAAGATGTTGTCCTGTGCCGGAGCTGATCGGCTCCAAACAGGAATGCGTGGTGCCTTCGGCAAACCGCAGGTTACGGTGGCTCGCGTCCACATCGGCCAGCCAATCATGTCGGTGCGCTCGAGCGACCGCTTCAAGGCGCAGGTCATCGAGGCGCTGCGTCGTGCCAAGTTCAAGTTCCCG GGTCGCCAGAAGATCTTCGTCTCGAAGAAGTGGGGCTTCACCAAGTACGACCGCGACGTGTACCAGAAGCACAACGACGAGGGCCGTCTGGTGCCGGACGGATGCGGTGTCCAGTTCCGCAACGATCACGGTCCGCTGGTCAAATGGGAGCAGCATCAACGCAACCGTCTTTCGGCCTAAGTGCGCCT CTTCGCCCTCGGGAAAGCGAGTTAGTTGCTGAAGCGTAACGACTTGCCGATTCTCTCTTTTTTGCGTGAAATAAAAAAAACACACA ] [-] EMBL CNS09EGN [ GCCCACTGGCTCTTTTTTTCCTCGTACGTCGGAGGAATCGCACGTGTTTATCGGAAAAAATGGGTCGCCGCCCGGCTCGGTGTTATCGTTACTGCAAAAAAAAACCCTACCCGAAATCGCGCTTTTGTCGCGGTGTTCCGGATCCGAAAATCCGCATCTTCGATTTGGGCCGCAAGAAGGCATGCGTGGAGGACTTCCCGCTCTGCGTGCTTCTCGTGTCGGACGAGTATGAGCAGCTCAGCTCGGAGGCGCTCGAGGCGGGCCGTTTCTGCTGCAAAAAGTTTTT GGTGAAGTTCTGCGGCAAGGACCAGTTCCACATCCGTATGCGCCTGCACCCGTTCCATGTGATCCGCATCAACAAGATGTTGTCCTGTGCCGGAGCTGATCGGCTCCAAACAGGAATGCGTTGGGTCTTCGGCAAACCGCAGGGTACGGTGGCTCGCGTCCACATCGGCCAGCCAATCATGTCGGTGCGCTCGAGCGACCGCTTCAAGGCGCAGGTCATCGAGGCGCTGCGTCGTGCCAAGTTCAAGTTCCCGCGGTCGCCAGAAGATCTTCGTCTCGAAGAAGTGGGGCTTCACCAAGTACGACCGCGACGTGTACCAGAAGCACAACGACGAGGGCCGTCTGGTGCCGGACGGATGCGGTGTCCAGTTCCGCAACGATCACGGTCCGCTGGTCAAATGGGGGCAGCATCAACGCAACCGTCTTTCGGCCTAAGTGCGCCT CTTCGCCCTCGGGAAAGCGAGTTAGTTGCTGAAGCGTAACGACTTGCCGATTCTCTC TTTTTGCGTGAAATAAAAAAAACACACACCTTCCTTGAAACAAGAAAAAAAAAAAA ] [+] EMBL CNS0914S [ gcCT ACTGGCTTTTTCCTCGTACGTCGGAGGAATCGCACGTGTGTATCGGAAAAAATGGGTCGCCGCCCGGCTCGGTGTTATCGTTACTGCAAAAACAAACCCTACCCGAAATCGCGCTTCTGTCGCGGTGTTCCGGATCCGAAAATCCGCATCTTCGATCTGGGCCGCAAGAAGGCATGCGTGGAGGACTTCCCGCTCTGCGTGCATCTCGTGTCGGACGAGTATGAGCAGCTCAGCTCGGAGGCGCTCGAGGCGGGCCGTATCTGCTGCAACAAGTACCT GGTGAAGTTCTGCGGCAAGGACCAGTTCCACATCCGTATGCGCCTGCACCCGTTCCATGTGATCCGCATCAACAAGATGTTGTCCTGTGCCGGAGCTGATCGGCTCCAAACAGGAATGCGTGGTGCCTTCGGCAAACCGCAGGGAACGGTGGCTCGCGTCCACATCGGCCAGCCGATCATGTCGGTGCGCTCGAGCGACCGCTTCAAGGCGCAGGTCATCGAGGCGCTGCGTCGTGCCAAGTTCAAGTTCCCG GGTCGCCAGAAGATCTTCGTCTCGAAGAAGTGGGGCTTCACCAAGTACGACCGCGACGTGTACCAGAAGCACAACGACGAGGGCCGTCTGGTGCCGGACGGATGCGGTGTCCAGTTCCGCAACGATCACGGTCCGCTGGTCAAATGGGAGCAGCATCAACGCAACCGACTTTCGGCCTAAGCGTGCCTGCTTC ] [+] EMBL CNS09AAH [ tggCTCTTTTCTTCCTCGTACGTCGGAGGAATCGCACGTGTGTATCGGAAAAAATGGGTCGCCGCCCGGCTCGGTGTTATCGTTACTGCAAAAACAAACCCTACCCGAAATCGCGCTTCTGTCGCGGTGTTCCGGATCCGAAAATCCGCATCTTCGATCTGGGCCGCAAGAAGGCATGCGTGGAGGACTTCCCGCTCTGCGTGCATCTCGTGTCGGACGAGTATGAGCAGCTCAGCTCGGAGGCGCTCGAGGCGGGCCGTATCTGCTGCCACCAGTATCTGGGTGACGTTCTGCGG ] [+] EMBL CNS0928N [ cctattggCTCTTTTTCCTCGTACGTCGGAGGAATCGCACGTGTGTATCGGAAAAAATGGGTCGCCGCCCGGCTCGGTGTTATCGTTACTGCAAAAACAAACCCTACCCGAAATCGCGCTTCTGTCGCGGTGTTCCGGATCCGAAAATCCGCATCTTCGATCTGGGCCGCAAGAAGGCATGCGTGGAGGACTTCCCGCTCTGCGTGCATCTCGTGTCGGACGAGTATGAGCAGCTCAGCTCGGAGGCGCTCGAGGCGGGCCGTATCTGCTGCAACAAGTACCT GGTGAAGTTCTGCGGCAAGGACCAGTTCCACATCCGTATGCGCCTGCACCCGTTCCATGTGATCCGCATCAACAAGATGTTGTCCTGTGCCGGAGCTGATCGGCTCCAAACAGGAATGCGTGGTGCCTTCGGCAAACCGCAGGGAACGGTGGCTCGCGTCCACATCGGCCAGCCGATCATGTCGGTGCGCTCGAGCGACCGCTTCAAGGCGCAGGTCATCGAGGCGCTGCGTCGTGCCAAGTTCAAGTTCCC ] [+] EMBL CNS08M07 [ GTCGGAGGAATCGCACGTGTGTATCGGAAAAAATGGGTCGCCGCCCGGCTCGGTGTTATCGTTACTGCAAAAACAAACCCTACCCGAAATCGCGCTTCTGTCGCGGTGTTCCGGATCCGAAAATCCGCATCTTCGATCTGGGCCGCAAGAAGGCATGCGTGGAGGACTTCCCGCTCTGCGTGCATCTCGTGTCGGACGAGTATGAGCAGCTCAGCTCGGAGGCGCTCGAGGCGGGCCGTATCTGCTGCAACAAGTATCT GGTGAAGTTCTGCGGCAAGGACCAGTTCCACATCCGTATGCGCCTGCACCCGTTCCATGTGATCCGCATCAACAAGATGTTGTCCTGTGCCGGAGCTGATCGGCTCCAAACAGGAATGCGTGGTGCCTTCGGCAAACCGCA GGTACGGTGGCTCGCGTCCACATCGGCCAGCCAATCATGTCGGTGCGCTCGAGCGACCGCTTCAAGGCGCAGGTCATCGAGGCGCTGCGTCGTGCCAAGTTCAAGTTCCCG GGTCGCCAGAAGATCTTCGTCTCGAAGAAGTGGGGCTTCACCAAGTACGACCGCGACGTGTACCAGAAGCACAACGACGAGGGCCGTCTGGTGCCGGACGGATGCGGTGTCCAGTTCCGCAACGATCACGGTCCGCTGGTCAAATGGGAGCAGCATCAACGCAACCGTCTTTCGGCCTAAGTGCGCCT CTTCGCCCTCGGGAAAGCGAGTTAGTTGCTGAAGCGTAACGACTTGCCGATTCTCTC TTTTTGCGTGAAATAAAACAAACACACACCTTCCTTGAAAC AGAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGTTGGTTCCG] consensusID : consensus_7779#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 811 fasta sequence [CTGTTGGCCTACTGGCTTTTTTTCCTCGTACGTCGGAGGAATCGCACGTGTGTATCGGAAAAAATGGGTCGCCGCCCGGCTCGGTGTTATCGTTACTGCAAAAACAAACCCTACCCGAAATCGCGCTTCTGTCGCGGTGTTCCGGATCCGAAAATCCGCATCTTCGATCTGGGCCGCAAGAAGGCATGCGTGGAGGACTTCCCGCTCTGCGTGCATCTCGTGTCGGACGAGTATGAGCAGCTCAGCTCGGAGGCGCTCGAGGCGGGCCGTATCTGCTGCAACAAGTTTCTGGTGAAGTTCTGCGGCAAGGACCAGTTCCACATCCGTATGCGCCTGCACCCGTTCCATGTGATCCGCATCAACAAGATGTTGTCCTGTGCCGGAGCTGATCGGCTCCAAACAGGAATGCGTGGCTTCGGCAAACCGCAGGGTACGGTGGCTCGCGTCCACATCGGCCAGCCAATCATGTCGGTGCGCTCGAGCGACCGCTTCAAGGCGCAGGTCATCGAGGCGCTGCGTCGTGCCAAGTTCAAGTTCCCGGGTCGCCAGAAGATCTTCGTCTCGAAGAAGTGGGGCTTCACCAAGTACGACCGCGACGTGTACCAGAAGCACAACGACGAGGGCCGTCTGGTGCCGGACGGATGCGGTGTCCAGTTCCGCAACGATCACGGTCCGCTGGTCAAATGGGAGCAGCATCAACGCAACCGTCTTTCGGCCTAAGTGCGCCTCTTCGCCCTCGGGAAAGCGAGTTAGTTGCTGAAGCGTAACGACTTGCCGATTCTCTCTTTTTGCGTGAAATAAAAAAAAAAAA] [-] EMBL CNS08M08 [CTGTTGGCCTACTGGCTTTTTTTCCTCGTACGTCGGAGGAATCGCACGTGTGTATCGGAAAAAATGGGTCGCCGCCCGGCTCGGTGTTATCGTTACTGCAAAAACAAACCCTACCCGAAATCGCGCTTCTGTCGCGGTGTTCCGGATCCGAAAATCCGCATCTTCGATCTGGGCCGCAAGAAGGCATGCGTGGAGGACTTCCCGCTCTGCGTGCATCTCGTGTCGGACGAGTATGAGCAGCTCAGCTCGGAGGCGCTCGAGGCGGGCCGTATCTGCTGCAACAAGTTTCTGGTGAAGTTCTGCGGCAAGGACCAGTTCCACATCCGTATGCGCCTGCACCCGTTCCATGTGATCCGCATCAACAAGATGTTGTCCTGTGCCGGAGCTGATCGGCTCCAAACAGGAATGCGTGGCTTCGGCAAACCGCAGGGTACGGTGGCTCGCGTCCACATCGGCCAGCCAATCATGTCGGTGCGCTCGAGCGACCGCTTCAAGGCGCAGGTCATCGAGGCGCTGCGTCGTGCCAAGTTCAAGTTCCCGGGTCGCCAGAAGATCTTCGTCTCGAAGAAGTGGGGCTTCACCAAGTACGACCGCGACGTGTACCAGAAGCACAACGACGAGGGCCGTCTGGTGCCGGACGGATGCGGTGTCCAGTTCCGCAACGATCACGGTCCGCTGGTCAAATGGGAGCAGCATCAACGCAACCGTCTTTCGGCCTAAGTGCGCCTCTTCGCCCTCGGGAAAGCGAGTTAGTTGCTGAAGCGTAACGACTTGCCGATTCTCTCTTTTTGCGTGAAATAAAAAAAAAAAA] [-] EMBL CNS09AAI [ ACGCAACCGTTTTTCGGCCTAAGTGCGCCTCTTCGCCCTCGGGAAAGCGAGTTAGTTGCTGAAGCGTAACGACTTGCCGATTCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7779#0 TTCTCCACCGCTCACGATGCGTCAGTTGCTTTGACAGGCACACTTCTCTCTTTTTCCTCG 60 consensus_7779#1 -------------------------------CTGTTGGCCTACTGG-CTTTTTTTCCTCG 28 *** *** ** ********** consensus_7779#0 TACGTCGGAGGAATCGCACGTGTGTATCGGAAAAAATGGGTCGCCGCCCGGCTCGGTGTT 120 consensus_7779#1 TACGTCGGAGGAATCGCACGTGTGTATCGGAAAAAATGGGTCGCCGCCCGGCTCGGTGTT 88 ************************************************************ consensus_7779#0 ATCGTTACTGCAAAAACAAACCCTACCCGAAATCGCGCTTCTGTCGCGGTGTTCCGGATC 180 consensus_7779#1 ATCGTTACTGCAAAAACAAACCCTACCCGAAATCGCGCTTCTGTCGCGGTGTTCCGGATC 148 ************************************************************ consensus_7779#0 CGAAAATCCGCATCTTCGATCTGGGCCGCAAGAAGGCATGCGTGGAGGACTTCCCGCTCT 240 consensus_7779#1 CGAAAATCCGCATCTTCGATCTGGGCCGCAAGAAGGCATGCGTGGAGGACTTCCCGCTCT 208 ************************************************************ consensus_7779#0 GCGTGCATCTCGTGTCGGACGAGTATGAGCAGCTCAGCTCGGAGGCGCTCGAGGCGGGCC 300 consensus_7779#1 GCGTGCATCTCGTGTCGGACGAGTATGAGCAGCTCAGCTCGGAGGCGCTCGAGGCGGGCC 268 ************************************************************ consensus_7779#0 GTATCTGCTGCAACAAGTATCTGGTGAAGTTCTGCGGCAAGGACCAGTTCCACATCCGTA 360 consensus_7779#1 GTATCTGCTGCAACAAGTTTCTGGTGAAGTTCTGCGGCAAGGACCAGTTCCACATCCGTA 328 ****************** ***************************************** consensus_7779#0 TGCGCCTGCACCCGTTCCATGTGATCCGCATCAACAAGATGTTGTCCTGTGCCGGAGCTG 420 consensus_7779#1 TGCGCCTGCACCCGTTCCATGTGATCCGCATCAACAAGATGTTGTCCTGTGCCGGAGCTG 388 ************************************************************ consensus_7779#0 ATCGGCTCCAAACAGGAATGCGTGGTGCCTTCGGCAAACCGCAGGGTACGGTGGCTCGCG 480 consensus_7779#1 ATCGGCTCCAAACAGGAATGCGTGG---CTTCGGCAAACCGCAGGGTACGGTGGCTCGCG 445 ************************* ******************************** consensus_7779#0 TCCACATCGGCCAGCCAATCATGTCGGTGCGCTCGAGCGACCGCTTCAAGGCGCAGGTCA 540 consensus_7779#1 TCCACATCGGCCAGCCAATCATGTCGGTGCGCTCGAGCGACCGCTTCAAGGCGCAGGTCA 505 ************************************************************ consensus_7779#0 TCGAGGCGCTGCGTCGTGCCAAGTTCAAGTTCCCGGGTCGCCAGAAGATCTTCGTCTCGA 600 consensus_7779#1 TCGAGGCGCTGCGTCGTGCCAAGTTCAAGTTCCCGGGTCGCCAGAAGATCTTCGTCTCGA 565 ************************************************************ consensus_7779#0 AGAAGTGGGGCTTCACCAAGTACGACCGCGACGTGTACCAGAAGCACAACGACGAGGGCC 660 consensus_7779#1 AGAAGTGGGGCTTCACCAAGTACGACCGCGACGTGTACCAGAAGCACAACGACGAGGGCC 625 ************************************************************ consensus_7779#0 GTCTGGTGCCGGACGGATGCGGTGTCCAGTTCCGCAACGATCACGGTCCGCTGGTCAAAT 720 consensus_7779#1 GTCTGGTGCCGGACGGATGCGGTGTCCAGTTCCGCAACGATCACGGTCCGCTGGTCAAAT 685 ************************************************************ consensus_7779#0 GGGAGCAGCATCAACGCAACCGTCTTTCGGCCTAAGTGCGCCTCTTCGCCCTCGGGAAAG 780 consensus_7779#1 GGGAGCAGCATCAACGCAACCGTCTTTCGGCCTAAGTGCGCCTCTTCGCCCTCGGGAAAG 745 ************************************************************ consensus_7779#0 CGAGTTAGTTGCTGAAGCGTAACGACTTGCCGATTCTCTCTTTTTGCGTGAAATAAAAAA 840 consensus_7779#1 CGAGTTAGTTGCTGAAGCGTAACGACTTGCCGATTCTCTCTTTTTGCGTGAAATAAAAAA 805 ************************************************************ consensus_7779#0 AACACACACCTTCCTTGAAACAGAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTG 900 consensus_7779#1 AAAAAA------------------------------------------------------ 811 ** * * consensus_7779#0 TTGGTTCCG 909 consensus_7779#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||