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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7782#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1234 fasta sequence
[GAAAGAGGAAGGAAACGTGGCATACACACAGAGGTCGACGATAGGTGTGACGCCGAAATATAAGAAACGAAAACTATTCATATATTTATTTATTGCTTAAAGTGCGATGCAACATGTGCGCATGC-AAGAAAGGGAGAAGCAGCCGGTGGATTCGCTGAATATTTAGAGTTTAAAAAA-ATATATGGCAAGTCGAGAAGAAAGGAACACGACACGAGCGCAAGCAAGCAAACAATCAAATTCTCGCTTTAAAACAAAATCACCAATGCTGCTTTTTGGAAGGGCAAAAGAAAAGGAAAAGAAATGGAATACCCTTATATACAC----ACACAC--ATTGCATACACCAGGCATCACCCCCAGGCACCAAGATACATATATTGATTAGATGGAAGATGGATCTTTGATGTTAAGATGTGTATTACAATTTTTTCAGGGCATACAAAGTATATGAGATAATTTGCATTTTTGA-GTGGGGAGCAATTT--GGGGCAGAGAGCGAAATAAGAAGCGATAAAGTACTAAACCCCCTCTCCGCCAAAACGGGCGATTATTTACAGTTGTTGATCGAGCATGTCTTCGATACAAGTAAAACAAACAAAAGTAACAAAATAAGTGGAACAACCATTAAGTGTGTGCAGAAGCATTAGCAATGCAGCAAGCGAATATTAAGCTCGCCAAAAGAATACAGCCGCTTTAGTTGTGGAGGGCGTCGTACGACGTAACGTATTTTACTGTGGGAAGCACTATTTGTACTATTGAATTTAAATGTAAGAAAGCTATCATCGATGTGCGCGTGTGCACATCACGGACGAGAGAGGCGTGTTGTGCTTCGTTTTGTGTGTCGCGCTTATACTTTTGTTGTTAAAACACCAACTAAAACGTCTCTCCCTTTTTCATTGCCCTGTTTCCAGTTTTGCAGATAAAAGCTAAAACACAATTTTTGGAGAAATTTTAAATCCCACCCTCCCAAGCAGAGCCTCTCTTAGGACCCCGTCAAAAAACAAAGAAAGACCCCCGCGTGTGTTAGAAGGAAAGAGGAACAAAAATATGTCAAACCAAAATACCATCAGTGTTCAGTGGAGTGTAAAACAATGAGAGAAAGATGGTGTGCAATAGC---AGTCAAAAGCCGCCAGCGCGCTCGTTCCGCACGTGCTTTCCGCACCAAAACAAGCGAAAACAATATTTCAATTGTACAAAAAATAACAAAAACTTTGGCAAACATTTGGCGACAAACCGAAAAAA]
[-] EMBL AGA280536 [GAAAGAGGAAGGAAACGTGGCATACACACAGAGGTCGACGATAGGTGTGACGCCGAAATATAAGAAACGAAAACTATTCATATATTTATTTATTGCTTAAAGTGCGATGCAACATGTGCGCATGCAAAGAAAGGGAGAAGCAGCCGGTGGATTCGCTGAATATTTAGAGTTTAAAAAA ATATATGGCAAGTCGAGAAGAAAGGAACACGACACGAGCGCAAGCAAGCAAACAATCAAATTCTCGCTTTAAAACAAAATCACCAATGCTGCTTTTTGGAAGGGCAAAAAAAA ]
[-] EMBL AGA281746 [ ACACACAGAGGTCGACGATAGGTGTGACGCCGAAATATAAGAAACGAAAACTATTCATATATTTATTTATTGCTTAAAGTGCGATGCAACATGTGCGCATGCAAAGAAAGGGAGAAGCAGCCGGTGGATTCGCTGAATATTTAGAGTTTAAAAAA ATATATGGCAAGTCGAGAAGAAAGGAACACGACACGAGCGCAAGCAAGCAAACAATCAAATTCTCGCTTTAAAACAAAATCACCAATGCTGCTTTTTGGAAGGGCAAAAGAAAAGGAAAAGAAATGGAATACCCTTATATACACACAAACACACATATTGCATACACCAGGCATCACCCCCAGGCACCAAGATACATATATTGATTAGATGGAAGATGGATCTTTGATGTTAAGATGTGTATTACAATTTTTTCAGGGCATACAAAGTATATGAGATAATTTGCATTTTTGA GAGGGGAGCAATTTTCGGGGCAGAG ]
[+] EMBL BX625105 [ AAGTGCGATGCAACATGTGCGCATGC AAGAAAGGGAGAAGCAGCCGGTGGATTCGCTGAATATTTAGAGTTTAAAAAATATATATGGCAAGTCGAGAAGAAAGGAACACGACACGAGCGCAAGCAAGCAAACAATCAAATTCTCGCTTTAAAACAAAATCACCAATGCTGCTTTTTCGAAGGGCAAAAGAAAAGGAAAAGAAATGTAAAACCCTTATATACAC ACACAC ATTGCATACACCAGGCATCACCCCCAGGCACCAAGATACATATATTGATTAGATGGAAGATGGATCTTTGATGTTAAGATGTGTATTACAATTTTTTCAGGGCATACAAAGTATATGAGATAATTTGCATTTTTGA GTGGGGAGCAATTT GTGGTAGAGAGCGAAATAAGAAGCGATAAAGTACTAAACCCCCTCTCCGCCAAAACGGGCGATTATTTACAGTTGTTGATCGAGCATGTCTTCGATACAAGTAAAACAAACAAAAGTAACAAAATAAGTGGAACAACCATTAAGTGTGTGCAGAAGCATTAGCAATGCAGCAAGCGAATATTAAGCTCGCCAAAAGAATACAGCCGCTTTAGTTGTGGAGGGCGTCGTACGACGTAACGTATTTTACTGTGGGAAGCACTATTTGTACTATTGAATTTAAATGTAAGAAAGCTATCATCGATGTGCGCGTGTGCACATCACGGACGAGAGAGGCGTGTTGTGCTTCGTTTTGTGTGTCGCGCT ]
[+] EMBL BX619478 [ CAAAGTATATGAGATAATTTGCATTTTNGAGGTGAGGAGCAGTTTC GGGGC NGAGCGAAATAGAAAGCGATAAAGTACTAAACCCCCTCTCCGCCAAAACGGGCGATTATTTACAGTTGTTGACCGAGCATGTCTTCGATACAAGTAAAACAAACAAAAGTAACAAAGTAAGTGGAACAACCATTAAGTGTGTGCTGAAGCATTAGCAATGCAGCAAGCGAATATTAAGCTCGCCAAAAGAATACAGCCGCTTTAGTTGTGGAGGGCGTCGTACGACGTAACGTATTTTACTGTGGGAAGCACTATTTGTACTATTGA ]
[+] EMBL BM610865 [ ccgCAACCATTAAGTGTGTGCAGAAGCATTAGCAATGCAGCAAGCGAATATTAAGCTCGCCAAAAGAATACAGCCGCTTTAGTTGTGGAGGGCGTCGTACGACGTAACGTATTTTACTGTGGGAAGCACTATTTGTACTATTGAATTTAAATGTAAGAAAGCTATCATCGATGTGCGCGTGTGCACATCACGGACGAGAGAGGCGTGTTGTGCTTCGTTTTGTGTGTCGCGCTTATACTTTTGTTGTTAAAACACCAACTAAAACGTCTCTCCCTTTTTCATTGCCCTGTTTCCAGTTTTGCAGATAAAAGCTAAAACACAATTTTTGGAGAAATTTTAAATCCCACCCTCCCAAGCAGAGCCTCTCTTAGGACCCCGTCAAAAAACAAAGAAAGACCCCCGCGTGTGTTAGAAGGAAAGAGGAACAAAAATATGTCAAACCAAAATACCATCAGTGTTCAGTGGAGTGTAAAACAATGAGAGAAAGATGGTGTGCAATAGC AGTCAAAAGCCGCCAGCGCGCTCGTTCCGCACGTGCTTTCCGCAC ]
[+] EMBL BM617269 [ ccgGTGCAGAAGCATTAGCAATGCAGCAAGCGAATATTAAGCTCGCCAAAAGAATACAGCCGCTTTAGTTGTGGAGGGCGTCGTACGACGTAACGTATTTTACTGTGGGAAGCACTATTTGTACTATTGAATTTAAATGTAAGAAAGCTATCATCGATGTGCGCGTGTGCACATCACGGACGAGAGAGGCGTGTTGTGCTTCGTTTTGTGTGTCGCGCTTATACTTTTGTTGTTAAAACACCAACTAAAACGTCTCTCCCTTTTTCATTGCCCTGTTTCCAGTTTTGCAGATAAAAGCTAAAACACAATTTTTGGAGAAATTTTAAATCCCACCCTCCCAAGCAGAGCCTCTCTTAGGACCCCGTCAAAAAACAAAGAAAGACCCCCGCGTGTGTTAGAAGGAAAGAGGAACAAAAATATGTCAAACCAAAATACCATCAGTGTTCAGTGGAGTGTAAAACAATGAGAGAAAGATGGTGTGCAATAGC AGTCAAAAGCCGCCAGCGCGCTCGTTCCGCACGTGCTTTCCGCACCAAAACAAGCGAAAACAATATTTCAATTGTACAAAAAATAACAAAAACTTTGGCAAACATTTGGCGACAAACCGAAAAAA]
[+] EMBL BM618740 [ ccgATTGAATTTAAATGTAAGAAAGCTATCATCGATGTGCGCGTGTGCACATCACGGACGAGAGAGGCGTGTTGTGCTTCGTTTTGTGTGTCGCGCTTATACTTTTGTTGTTAAAACACCAACTAAACCGTCTCTCCCTTTTTCATTGCCCTG TTTGCAGATAAAAGCTAAAACACAATTTTTGGAGAAATTTTAAATCCCACCCTCCCAAGCAGAGCCTCTCTTAGGACCCCGTC AAAAACAAAGAGAGATCCCCGCGTGTGTTAGAAGGAAAGAGGAACAAAAATATTTCAAACCAAAATACCATCAGTGTTCAGTGGAGTGTAAAACAATGAGAGAAAGATGGTGTGCAATAGCAAAAGTGAAAAGCCGCCAGCGCGCTCGTGCCGCATGTGCTTTCCGCACCAAAACAAGCGAAAACAATATTTCAATTGTACAAAAAATAGC AAAACTTTGGGAAAa ]
consensusID : consensus_7782#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 523 fasta sequence
[CCAGAATCGCACGAGGTGACACGAGCGCAAGCAGCAACACNCTCAAATTCTCGCTTTAAAACAAAATCACCAATGCTGCTTTTTCGAAGGGCAAAAGAAAAGGAAAAGAAATGTAAAACCCTTATATACACACACACATTGCATACACCAGGCATCACCCCCAGGCACCAAGATACATATATTGATTAGATGGAAGATGGATCTTTGATGTTAAGATGTGTATTACAATGTTTTTCAGGGGCATACAAAGTATATGAGATAATTTGCATTTTTGAGTGGGGAGCAATTTGTGGTAGAGAGCGAAATAAGAAGCGAGTAAAGTACTAAACCCCACGTCTCCGCCGAAAACGGGCGACTTATGTTACAAGTTGTTTGATCGAGGCATGTCTTTCGATACNAAGTNAAACAAGACCAANAGAGTAACGACAAACTACAGGTGGGAACAAGCCCAGTTAAAGGTGGTGGTGCCAGACAGCNATTTAGGNCAACATGGCCANGNCAAGGCGGCAANTAATTTAAGGCC]
[+] EMBL BX469232 [CCAGAATCGCACGAGGTGACACGAGCGCAAGCAGCAACACNCTCAAATTCTCGCTTTAAAACAAAATCACCAATGCTGCTTTTTCGAAGGGCAAAAGAAAAGGAAAAGAAATGTAAAACCCTTATATACACACACACATTGCATACACCAGGCATCACCCCCAGGCACCAAGATACATATATTGATTAGATGGAAGATGGATCTTTGATGTTAAGATGTGTATTACAATGTTTTTCAGGGGCATACAAAGTATATGAGATAATTTGCATTTTTGAGTGGGGAGCAATTTGTGGTAGAGAGCGAAATAAGAAGCGAGTAAAGTACTAAACCCCACGTCTCCGCCGAAAACGGGCGACTTATGTTACAAGTTGTTTGATCGAGGCATGTCTTTCGATACNAAGTNAAACAAGACCAANAGAGTAACGACAAACTACAGGTGGGAACAAGCCCAGTTAAAGGTGGTGGTGCCAGACAGCNATTTAGGNCAACATGGCCANGNCAAGGCGGCAANTAATTTAAGGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7782#0 GAAAGAGGAAGGAAACGTGGCATACACACAGAGGTCGACGATAGGTGTGACGCCGAAATA 60
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 TAAGAAACGAAAACTATTCATATATTTATTTATTGCTTAAAGTGCGATGCAACATGTGCG 120
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 CATGCAAGAAAGGGAGAAGCAGCCGGTGGATTCGCTGAATATTTAGAGTTTAAAAAAATA 180
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 TATGGCAAGTCGAGAAGAAAGGAACACGACACGAGCGCAAGCAAGCAAACAATCAAATTC 240
consensus_7782#1 ----------CCAGAATCGCACGAGGTGACACGAGCGCAAGCAGCAACACNCTCAAATTC 50
* **** * **************** * ** ********
consensus_7782#0 TCGCTTTAAAACAAAATCACCAATGCTGCTTTTTGGAAGGGCAAAAGAAAAGGAAAAGAA 300
consensus_7782#1 TCGCTTTAAAACAAAATCACCAATGCTGCTTTTTCGAAGGGCAAAAGAAAAGGAAAAGAA 110
********************************** *************************
consensus_7782#0 ATGGAATACCCTTATATACACACACACATTGCATACACCAGGCATCACCCCCAGGCACCA 360
consensus_7782#1 ATGTAAAACCCTTATATACACACACACATTGCATACACCAGGCATCACCCCCAGGCACCA 170
*** ** *****************************************************
consensus_7782#0 AGATACATATATTGATTAGATGGAAGATGGATCTTTGATGTTAAGATGTGTATTACAAT- 419
consensus_7782#1 AGATACATATATTGATTAGATGGAAGATGGATCTTTGATGTTAAGATGTGTATTACAATG 230
***********************************************************
consensus_7782#0 TTTTTCAGGG-CATACAAAGTATATGAGATAATTTGCATTTTTGAGTGGGGAGCAATTTG 478
consensus_7782#1 TTTTTCAGGGGCATACAAAGTATATGAGATAATTTGCATTTTTGAGTGGGGAGCAATTTG 290
********** *************************************************
consensus_7782#0 GGGCAGAGAGCGAAATAAGAAGCGA-TAAAGTACTAAACCCCC--TCTCCGCC-AAAACG 534
consensus_7782#1 TGGTAGAGAGCGAAATAAGAAGCGAGTAAAGTACTAAACCCCACGTCTCCGCCGAAAACG 350
** ********************* **************** ******** ******
consensus_7782#0 GGCGA-TTAT-TTACA-GTTGTT-GATCGAG-CATGTCTT-CGATACAAGTAAAACAAAC 588
consensus_7782#1 GGCGACTTATGTTACAAGTTGTTTGATCGAGGCATGTCTTTCGATAC---NAAGTNAAAC 407
***** **** ***** ****** ******* ******** ****** ** ****
consensus_7782#0 AAAAGTAACAAAATAAGTGGAACAACCATTAAGTGTGTGCAGAAGCA-TTAGCAATGCAG 647
consensus_7782#1 AAGACCAANAGAGTAA---CGACAAACTACAGGTGGGAACAAGCCCAGTTAAAGGTGGTG 464
** * ** * * *** **** * * *** * ** ** *** ** *
consensus_7782#0 CAAGCGAATATTAAGCTCGCCAAAAGAATACAGCCGCTTTAGTTGTGGAGGGCGTCGTAC 707
consensus_7782#1 GTGCCAGACAGCNATTT----AGGNCAACATGGCCANGNCAAG-GCGGCAANTAATTTAA 519
* * * * * * ** * *** * * ** **
consensus_7782#0 GACGTAACGTATTTTACTGTGGGAAGCACTATTTGTACTATTGAATTTAAATGTAAGAAA 767
consensus_7782#1 GGCC-------------------------------------------------------- 523
* *
consensus_7782#0 GCTATCATCGATGTGCGCGTGTGCACATCACGGACGAGAGAGGCGTGTTGTGCTTCGTTT 827
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 TGTGTGTCGCGCTTATACTTTTGTTGTTAAAACACCAACTAAAACGTCTCTCCCTTTTTC 887
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 ATTGCCCTGTTTCCAGTTTTGCAGATAAAAGCTAAAACACAATTTTTGGAGAAATTTTAA 947
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 ATCCCACCCTCCCAAGCAGAGCCTCTCTTAGGACCCCGTCAAAAAACAAAGAAAGACCCC 1007
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 CGCGTGTGTTAGAAGGAAAGAGGAACAAAAATATGTCAAACCAAAATACCATCAGTGTTC 1067
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 AGTGGAGTGTAAAACAATGAGAGAAAGATGGTGTGCAATAGCAGTCAAAAGCCGCCAGCG 1127
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 CGCTCGTTCCGCACGTGCTTTCCGCACCAAAACAAGCGAAAACAATATTTCAATTGTACA 1187
consensus_7782#1 ------------------------------------------------------------
consensus_7782#0 AAAAATAACAAAAACTTTGGCAAACATTTGGCGACAAACCGAAAAAA 1234
consensus_7782#1 -----------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||