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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7812#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1216 fasta sequence
[CCGCGGACGCGTGGGCTCGCACGGTACAGTACGGTAGTCGCACGGTTCTTCATTCAGATTTTGCCGACTGATTCATCAGCAAGTCCAACCCATCAAAACGATGGAGCACGATTTGGGCTACGACCTAGCAGAGGCACTCGAGCGAGAAGATCTATCCCGGGAGGATTTGAAAGCGCTGCGTCAGCCACCGGTCGAGGGCGTGCCGGCAACGATCACCGACAAACAGTTGGCCTGCTTCCTGGATGCGTGCGATAAGAACATCGACGAGACGCGCAAAGTGCTGAAAATTTACTACGAAGCGCGCAAAAATGGACCGGAACTGTTTAACAATCGTGATCCGCACAGTGCCGCCATTCAGCAGTGTCTGCAAAATCAAGACTACTTCCCACTTCCACCCACCCCGAGCGGGTATTCGGTGGTGTTTCATCGGTTGAAAAACTCCCGCTCCTCCAACTATCACTTTGACGAAGCGATCAAGACGTACTTCATGACGATCGACTCCTGCCTGTACACGCA-GGG-ACCGCGGCCGGGCATCATCTTCCTGTTCGACATGAAGAACGTCGGGCTGATGCATCTGACCCGCATCAACATGAGCTCGGTGCGAAAGTTTTTCCACTACCTGCAGGACGGGCTGCCGGCGAAGCTGAAAGCGATACACGTGATGAACGTGGTGTCGTTCTTCGATAAGATCCTTTACATCATAAAACCCTTCATTCACGCGGAAATCCTCAATGTGCTCTACCTGCACACTTCTAGCGCCAATTTGGATTCGTTCTACGAGGAGTGGATACCGAAGAGTGGGCTGCCGTCCGATCTTGGCGGAGATATGAAATCGATCGACGAGCTTCACCAGGACCATCTGAAGGAGTTCGAAAGGCTGAGACCGTACTTCCTCGCCGAGGAGCGTCAACGCAATGGCGAAGCCGGCAACTTGATTGACGAGCCGACGGATCGTATGCTTAAGTCCCTATCGATAGACTAATTCCAACGGGCATGCTAACCCGCTTAATGTCGTGTACATCGTTGTGATAGGAAACCTATTCTGCACAAATCGGTCAGAATTCCAGAGCTGATTAAGCCAAACTACTACAAAGCGAGGGGTATTGGGGAGGTTCCACACATTACTATTACTACTACCTTGGTGTGCTTTTTTATACTGTATTTTTAAGAACCTGGTATTATACACTCTCTATCACTGCTTTATGCTGGTTAGTAT]
[+] EMBL BM576674 [CCGCGGACGCGTGGGCTCGCACGGTACAGTACGGTAGTCGCACGGTTCTTCATTCAGATTTTGCCGACTGATTCATCAGCAAGTCCAACCCATCAAAACGATGGAGCACGATTTGGGCTACGACCTAGCAGAGGCACTCGAGCGAGAAGATCTATCCCGGGAGGATTTGAAAGCGCTGCGTCAGCCACCGGTCGAGGGCGTGCCGGCAACGATCACCGACAAACAGTTGGCCTGCTTCCTGGATGCGTGCGATAAGAACATCGACGAGACGCGCAAAGTGCTGAAAATTTACTACGAAGCGCGCAAAAATGGACCGGAACTGTTTAACAATCGTGATCCGCACAGTGCCGCCATTCAGCAGTGTCTGCAAAATCAAGACTACTTCCCACTTCCACCCACCCCGAGCGGGTATTCGGTGGTGTTTCATCGGTTGAAAAACTCCCGCTCCTCCAACTATCACTTTGACGAAGCGATCAAGACGTACTTCATGACGATCGACTCCTGCCTGTACACGCA GGGCACCGCGGCCGGGCATCATCTTCCTGTTCGACATGAAGAACGTCGGGCTGATGCATCTGACCCGCATCAACATGAGCTCGGTGCGAAAGTTTTTCCACTACCTGCAGGACGGGCTGCCGGCGAAGCTGAAAGCGATACACGTGATGAACGTGGTGTCGTTCT ]
[+] EMBL BM639617 [ ccGCTCGCACGGTACAGTACGGTAGTCGCACGGTTCTTCATTCAGATTTTGCCGACTGATTCATCAGCAAGTCCAACCCATCAAAACGATGGAGCACGATTTGGGCTACGACCTAGCAGAGGCACTCGAGCGAGAAGATCTATCCCGGGAGGATTTGAAAGCGCTGCGTCAGCCACCGGTCGAGGGCGTGCCGGCAACGATCACCGACAAACAGTTGGCCTGCTTCCTGGATGCGTGCGATAAGAACATCGACGAGACGCGCAAAGTGCTGAAAATTTACTACGAAGCGCGCAAAAATGGACCGGAACTGTTTAACAATCGTGATCCGCACAGTGCCGCCATTCAGCAGTGTCTGCAAAATCAAGACTACTTCCCACTTCCACCCACCCCGAGCGGGTATTCGGTGGTGTTTCATCGGTTGAAAAACTCCCGCTCCTCCAACTATCACTTTGACGAAGCGATCAAGACGTACTTCATGACGATCGACTCCTGCCTGTACACGCAGGGG ACCGCGGCCGGGCATCATCTTCCTGTTCGACATGAAGAACGTCGGGCTGATGCATCTGACCCGCATCAACATGAGCTCGGTGCGAAAGTTTTTCCACTACCTGCAGGA ]
[+] EMBL BM628460 [ ccgGGCAACGATCACCGACAAACAGTTGGCCTGCTTCCTGGATGCGTGCGATAAGAACATCGACGAGACGCGCAAAGTGCTGAAAATTTACTACGAAGCGCGCAAAAATGGACCGGAACTGTTTAACAACCGTGATCCGCACAGTGCCGCCATTCAGCAGTGTCTGCAAAATCAAGACTACTTCCCACTTCCACCCACCCCGAGCGGGTATTCGGTGGTGTTTCATCGGTTGAAAAACTCCCGCTCCTCCAACTATCACTTTGACGAAGCGATCAAGACGTACTTCATGACGATCGACTCCTGCCTGTACACGCA GGG ACCGCGGCCGGGCATCATCTTCCTGTTCGACATGAAGAACGTCGGACTGATGCATCTGACCCGCATCAACATGAGCTCGGTGCGAAAGTTTTTCCACTACCTGCAGGAAGGGCTGCCGGCGAAGCTGAAAGCGATACACGTGATGAACGTGGTGTCGTTCTTCGATAAGATCCTTTACATCATAAAACCCTTCATTCACGCGGAAATCCTCAATGTGCTCTACCTGCACACTTCTAGCGCCAATTTGGATTCGTTCTACGAGGAGTGGATACCGAAGAGTGGGCTGCCGTCCGATCTTGGCGGAGATATGAAATCGATCGACGAGCTTCACCAGGACCATCTGAAGGAGTTCGAAAGGCTGAGACCGTACTTC ]
[+] EMBL BX625696 [ ggCGAGCGGGTATTCGGTGGTGTTTCATCGGTTGAAAAACTCCCGCTCCTCCAACTATCACTTTGACGAAGCGATCAAGACGTACTTCATGACGATCGACTCCTGCCTGTACACGCA GGG ACCGCGGCCGGGCATCATCTTCCTGTTCGACATGAAGAACGTCGGGCTGATGCATCTGACCCGCATCAACATGAGCTCGGTGCGAAAGTTTTTCCACTACCTGCAGGACGGGCTGCCGGCGAAGCTGAAAGCGATACACGTGATGAACGTGGTGTCGTTCTTCGATAAGATCCTTTACATCATAAAACCCTTTATTCACGCGGAAATCCTCAATGTGCTCTACCTGCACACTTCTAGCGCCAATTTGGATTCGTTCTACGAGGAGTGGATACCGAAGAGTGGGCTGCCGTCCGATCTTGGCGGAGATATGAAATCGATCGACGAGCTTCACCAGGACCATCTGAAGGAGTTCGAAAGGCTGAGACCGTACTTCCTCGCCGAGGAGCGTCAACGCAATGGCGAAGCCGGCAACTTGATTGACGAGCCGACGGATCGTATGCTTAAGTCCCTATCGATAGACTAATTCCAACGGGCATGCTAACCCGCTTAATGTCGTGTACATCGTTGTGATAGGAAACCTATTCTGCACAAATCGGTCAGAATTCCAGAGCTGATTAAGCCAAACTACTACAAAGCGAGGGGTATTGGGGAGGTTCCACACATTACTATTACTACTACCTTGGTGTGCTTTTTTATACTGTATTTTTAAGAACCTGGTATTATACACTCTCTATCACTGCTTTATGCTGGTTAGTAT]
consensusID : consensus_7812#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 740 fasta sequence
[GTCAGCCCTTTGCCGGTGTAAAGTGTGACGCAAGATGATTGCGCACCATAATCCTTCAATAAATCGTCGTTATTTTTAATCGCTCGGATACTGATACTTACGTTCCGCTGACCGTGTTTTAAGCAATGAGCTTTAATGCTAGGATTTGAAGCGCAAAGAAGCCGCGCGGTGGGAGCGGTAAAAGCCCATCATGTCGGGTCCAACCCATCCAACCCATCAAAACGATGGAGCACGATTTGGGCTACGACCTAGCAGAGGCACTCGAGCGAGAAGATCTATCCCGGGAGGATTTGAAAGCGCTGCGTCAGCCACCGGTCGAGGGCGTGCCGGCAACGATCACCGACAAACAGTTGGCCTGCTTCCTGGATGCGTGCGATAAGAACATCGACGAGACGCGCAAAGTGCTGAAAATTTACTACGAGGCGCGCAAAAATGGACCAGAACTGTTTAACAACCGTGATCCGCACAGTGCCGCCATTCAGCAGTGTCTTCAAAATCAAGACTACTTCCCACTTCCACCCACCCCGAGCGGGTATTCGGTGGTGTTTCATCGGTTGAAAAACTCCCGCTCCTCCAACTATCACTTTGACGAAGCGATCAAAACGTACTTCATGACGATCGACTCCTGCCTGTACACGCAGGGACCGCGGCCGGGCATCATCTTCCTGTTCGACATGAAGAACGTCGGACTGATGCATCTGACCCGCATCAACATGAGCTCGGTGCGAAAGTTTTTCCAC]
[+] EMBL BX604893 [GTCAGCCCTTTGCCGGTGTAAAGTGTGACGCAAGATGATTGCGCACCATAATCCTTCAATAAATCGTCGTTATTTTTAATCGCTCGGATACTGATACTTACGTTCCGCTGACCGTGTTTTAAGCAATGAGCTTTAATGCTAGGATTTGAAGCGCAAAGAAGCCGCGCGGTGGGAGCGGTAAAAGCCCATCATGTCGGGTCCAACCCATCCAACCCATCAAAACGATGGAGCACGATTTGGGCTACGACCTAGCAGAGGCACTCGAGCGAGAAGATCTATCCCGGGAGGATTTGAAAGCGCTGCGTCAGCCACCGGTCGAGGGCGTGCCGGCAACGATCACCGACAAACAGTTGGCCTGCTTCCTGGATGCGTGCGATAAGAACATCGACGAGACGCGCAAAGTGCTGAAAATTTACTACGAGGCGCGCAAAAATGGACCAGAACTGTTTAACAACCGTGATCCGCACAGTGCCGCCATTCAGCAGTGTCTTCAAAATCAAGACTACTTCCCACTTCCACCCACCCCGAGCGGGTATTCGGTGGTGTTTCATCGGTTGAAAAACTCCCGCTCCTCCAACTATCACTTTGACGAAGCGATCAAAACGTACTTCATGACGATCGACTCCTGCCTGTACACGCAGGGACCGCGGCCGGGCATCATCTTCCTGTTCGACATGAAGAACGTCGGACTGATGCATCTGACCCGCATCAACATGAGCTCGGTGCGAAAGTTTTTCCAC]
[+] EMBL BX603747 [ tggccaGTCCAACCCATCCAACCCATCAAAACGATGGAGCACGATTTGGGCTACGACCTAGCAGAGGCACTCGAGCGAGAAGATCTATCCCGGGAGGATTTGAAAGCGCTGCGTCAGCCACCGGTCGAGGGCGTGCCGGCAACGATCACCGACAAACAGTTGGCCTGCTTCCTGGATGCGT ]
[+] EMBL BX601970 [ AGAAGATCTATCCCGGGAGGATTTGAAAGCGCTGCGTCAGCCACCGGTCGAGGGCGTGCCGGCAACGATCACCGACAAACAGTTGGCCTGCTTCCTGGATGCGTGCGATAAGAACATCGACGAGACGCGCAAAGTGCTGAAAATTTACTACGAGGCGCGCAAAAATGGACCAGAACTGTTTAACAACCGTGATCCGCACAGTGgcc ]
consensusID : consensus_7812#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence
[CCGAGGTTAACGGGTACAGTACGGTAGTCGCACGGTTCTTCATTCAGATTTTGCCGACTGATTCATCAGCAAGTCCAACCCATCAAAACGATGGAGCACGATTTGGGCTACGACCTAGCAGAGGCACTCGAGCGAGAAGATCTATCCCGGGAGGATTTGAAAGCGCTGCGTCAGCCACCGGTCGAGGGCGTGCCGGCAACGATCACCGACAAACAGTTGGCCTGCTTCCTGGATGCGTGCGATAAGAACATCGACGAGACGCGCAAAGTGCTGAAAATTTACTACGAAGCGCGCAAAAATGGACCGGAACTGTTTAACAATCGTGATCCGCACAGTGCCGCCATTCAGCAGTGTCTGCAAAATCAAGACTACTTCCCACTTCCACCCACCCCGAGCGGGTATTCGGTGGTGTTTCATCGGTTGAAAAACTCCCGCTCCTCCAACTATCACTTTGACGAAGCGATCAAGACGTACTTCATGACGATCGACTCCTGGCCTGT]
[+] EMBL AL932206 [CCGAGGTTAACGGGTACAGTACGGTAGTCGCACGGTTCTTCATTCAGATTTTGCCGACTGATTCATCAGCAAGTCCAACCCATCAAAACGATGGAGCACGATTTGGGCTACGACCTAGCAGAGGCACTCGAGCGAGAAGATCTATCCCGGGAGGATTTGAAAGCGCTGCGTCAGCCACCGGTCGAGGGCGTGCCGGCAACGATCACCGACAAACAGTTGGCCTGCTTCCTGGATGCGTGCGATAAGAACATCGACGAGACGCGCAAAGTGCTGAAAATTTACTACGAAGCGCGCAAAAATGGACCGGAACTGTTTAACAATCGTGATCCGCACAGTGCCGCCATTCAGCAGTGTCTGCAAAATCAAGACTACTTCCCACTTCCACCCACCCCGAGCGGGTATTCGGTGGTGTTTCATCGGTTGAAAAACTCCCGCTCCTCCAACTATCACTTTGACGAAGCGATCAAGACGTACTTCATGACGATCGACTCCTGGCCTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7812#0 ------------------------------------------------------------
consensus_7812#2 ------------------------------------------------------------
consensus_7812#1 GTCAGCCCTTTGCCGGTGTAAAGTGTGACGCAAGATGATTGCGCACCATAATCCTTCAAT 60
consensus_7812#0 ------------------------------------------------------------
consensus_7812#2 ------------------------------------------------------------
consensus_7812#1 AAATCGTCGTTATTTTTAATCGCTCGGATACTGATACTTACGTTCCGCTGACCGTGTTTT 120
consensus_7812#0 ---CCGCGGACGCGTGGGCTCGCAC-GGTACAGTACGGTAGTCGCACGGTTCTT-CATTC 55
consensus_7812#2 ------------CCGAGGTTAACG--GGTACAGTACGGTAGTCGCACGGTTCTT-CATTC 45
consensus_7812#1 AAGCAATGAGCTTTAATGCTAGGATTTGAAGCGCAAAGAAGCCGCGCGGTGGGAGCGGTA 180
* * * * * * * ** *** **** * *
consensus_7812#0 AGATTTTGCCG-ACTGATTCATCAGCAAGTCCAACCCATCAAAACGATGGAGCACGATTT 114
consensus_7812#2 AGATTTTGCCG-ACTGATTCATCAGCAAGTCCAACCCATCAAAACGATGGAGCACGATTT 104
consensus_7812#1 AAAGCCCATCATGTCGGGTC--CAACCCATCCAACCCATCAAAACGATGGAGCACGATTT 238
* * * * ** ** * *******************************
consensus_7812#0 GGGCTACGACCTAGCAGAGGCACTCGAGCGAGAAGATCTATCCCGGGAGGATTTGAAAGC 174
consensus_7812#2 GGGCTACGACCTAGCAGAGGCACTCGAGCGAGAAGATCTATCCCGGGAGGATTTGAAAGC 164
consensus_7812#1 GGGCTACGACCTAGCAGAGGCACTCGAGCGAGAAGATCTATCCCGGGAGGATTTGAAAGC 298
************************************************************
consensus_7812#0 GCTGCGTCAGCCACCGGTCGAGGGCGTGCCGGCAACGATCACCGACAAACAGTTGGCCTG 234
consensus_7812#2 GCTGCGTCAGCCACCGGTCGAGGGCGTGCCGGCAACGATCACCGACAAACAGTTGGCCTG 224
consensus_7812#1 GCTGCGTCAGCCACCGGTCGAGGGCGTGCCGGCAACGATCACCGACAAACAGTTGGCCTG 358
************************************************************
consensus_7812#0 CTTCCTGGATGCGTGCGATAAGAACATCGACGAGACGCGCAAAGTGCTGAAAATTTACTA 294
consensus_7812#2 CTTCCTGGATGCGTGCGATAAGAACATCGACGAGACGCGCAAAGTGCTGAAAATTTACTA 284
consensus_7812#1 CTTCCTGGATGCGTGCGATAAGAACATCGACGAGACGCGCAAAGTGCTGAAAATTTACTA 418
************************************************************
consensus_7812#0 CGAAGCGCGCAAAAATGGACCGGAACTGTTTAACAATCGTGATCCGCACAGTGCCGCCAT 354
consensus_7812#2 CGAAGCGCGCAAAAATGGACCGGAACTGTTTAACAATCGTGATCCGCACAGTGCCGCCAT 344
consensus_7812#1 CGAGGCGCGCAAAAATGGACCAGAACTGTTTAACAACCGTGATCCGCACAGTGCCGCCAT 478
*** ***************** ************** ***********************
consensus_7812#0 TCAGCAGTGTCTGCAAAATCAAGACTACTTCCCACTTCCACCCACCCCGAGCGGGTATTC 414
consensus_7812#2 TCAGCAGTGTCTGCAAAATCAAGACTACTTCCCACTTCCACCCACCCCGAGCGGGTATTC 404
consensus_7812#1 TCAGCAGTGTCTTCAAAATCAAGACTACTTCCCACTTCCACCCACCCCGAGCGGGTATTC 538
************ ***********************************************
consensus_7812#0 GGTGGTGTTTCATCGGTTGAAAAACTCCCGCTCCTCCAACTATCACTTTGACGAAGCGAT 474
consensus_7812#2 GGTGGTGTTTCATCGGTTGAAAAACTCCCGCTCCTCCAACTATCACTTTGACGAAGCGAT 464
consensus_7812#1 GGTGGTGTTTCATCGGTTGAAAAACTCCCGCTCCTCCAACTATCACTTTGACGAAGCGAT 598
************************************************************
consensus_7812#0 CAAGACGTACTTCATGACGATCGACTCCTG-CCTGTACACGCAGGGACCGCGGCCGGGCA 533
consensus_7812#2 CAAGACGTACTTCATGACGATCGACTCCTGGCCTGT------------------------ 500
consensus_7812#1 CAAAACGTACTTCATGACGATCGACTCCTG-CCTGTACACGCAGGGACCGCGGCCGGGCA 657
*** ************************** *****
consensus_7812#0 TCATCTTCCTGTTCGACATGAAGAACGTCGGGCTGATGCATCTGACCCGCATCAACATGA 593
consensus_7812#2 ------------------------------------------------------------
consensus_7812#1 TCATCTTCCTGTTCGACATGAAGAACGTCGGACTGATGCATCTGACCCGCATCAACATGA 717
consensus_7812#0 GCTCGGTGCGAAAGTTTTTCCACTACCTGCAGGACGGGCTGCCGGCGAAGCTGAAAGCGA 653
consensus_7812#2 ------------------------------------------------------------
consensus_7812#1 GCTCGGTGCGAAAGTTTTTCCAC------------------------------------- 740
consensus_7812#0 TACACGTGATGAACGTGGTGTCGTTCTTCGATAAGATCCTTTACATCATAAAACCCTTCA 713
consensus_7812#2 ------------------------------------------------------------
consensus_7812#1 ------------------------------------------------------------
consensus_7812#0 TTCACGCGGAAATCCTCAATGTGCTCTACCTGCACACTTCTAGCGCCAATTTGGATTCGT 773
consensus_7812#2 ------------------------------------------------------------
consensus_7812#1 ------------------------------------------------------------
consensus_7812#0 TCTACGAGGAGTGGATACCGAAGAGTGGGCTGCCGTCCGATCTTGGCGGAGATATGAAAT 833
consensus_7812#2 ------------------------------------------------------------
consensus_7812#1 ------------------------------------------------------------
consensus_7812#0 CGATCGACGAGCTTCACCAGGACCATCTGAAGGAGTTCGAAAGGCTGAGACCGTACTTCC 893
consensus_7812#2 ------------------------------------------------------------
consensus_7812#1 ------------------------------------------------------------
consensus_7812#0 TCGCCGAGGAGCGTCAACGCAATGGCGAAGCCGGCAACTTGATTGACGAGCCGACGGATC 953
consensus_7812#2 ------------------------------------------------------------
consensus_7812#1 ------------------------------------------------------------
consensus_7812#0 GTATGCTTAAGTCCCTATCGATAGACTAATTCCAACGGGCATGCTAACCCGCTTAATGTC 1013
consensus_7812#2 ------------------------------------------------------------
consensus_7812#1 ------------------------------------------------------------
consensus_7812#0 GTGTACATCGTTGTGATAGGAAACCTATTCTGCACAAATCGGTCAGAATTCCAGAGCTGA 1073
consensus_7812#2 ------------------------------------------------------------
consensus_7812#1 ------------------------------------------------------------
consensus_7812#0 TTAAGCCAAACTACTACAAAGCGAGGGGTATTGGGGAGGTTCCACACATTACTATTACTA 1133
consensus_7812#2 ------------------------------------------------------------
consensus_7812#1 ------------------------------------------------------------
consensus_7812#0 CTACCTTGGTGTGCTTTTTTATACTGTATTTTTAAGAACCTGGTATTATACACTCTCTAT 1193
consensus_7812#2 ------------------------------------------------------------
consensus_7812#1 ------------------------------------------------------------
consensus_7812#0 CACTGCTTTATGCTGGTTAGTAT 1216
consensus_7812#2 -----------------------
consensus_7812#1 -----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||