These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7812#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1216 fasta sequence [CCGCGGACGCGTGGGCTCGCACGGTACAGTACGGTAGTCGCACGGTTCTTCATTCAGATTTTGCCGACTGATTCATCAGCAAGTCCAACCCATCAAAACGATGGAGCACGATTTGGGCTACGACCTAGCAGAGGCACTCGAGCGAGAAGATCTATCCCGGGAGGATTTGAAAGCGCTGCGTCAGCCACCGGTCGAGGGCGTGCCGGCAACGATCACCGACAAACAGTTGGCCTGCTTCCTGGATGCGTGCGATAAGAACATCGACGAGACGCGCAAAGTGCTGAAAATTTACTACGAAGCGCGCAAAAATGGACCGGAACTGTTTAACAATCGTGATCCGCACAGTGCCGCCATTCAGCAGTGTCTGCAAAATCAAGACTACTTCCCACTTCCACCCACCCCGAGCGGGTATTCGGTGGTGTTTCATCGGTTGAAAAACTCCCGCTCCTCCAACTATCACTTTGACGAAGCGATCAAGACGTACTTCATGACGATCGACTCCTGCCTGTACACGCA-GGG-ACCGCGGCCGGGCATCATCTTCCTGTTCGACATGAAGAACGTCGGGCTGATGCATCTGACCCGCATCAACATGAGCTCGGTGCGAAAGTTTTTCCACTACCTGCAGGACGGGCTGCCGGCGAAGCTGAAAGCGATACACGTGATGAACGTGGTGTCGTTCTTCGATAAGATCCTTTACATCATAAAACCCTTCATTCACGCGGAAATCCTCAATGTGCTCTACCTGCACACTTCTAGCGCCAATTTGGATTCGTTCTACGAGGAGTGGATACCGAAGAGTGGGCTGCCGTCCGATCTTGGCGGAGATATGAAATCGATCGACGAGCTTCACCAGGACCATCTGAAGGAGTTCGAAAGGCTGAGACCGTACTTCCTCGCCGAGGAGCGTCAACGCAATGGCGAAGCCGGCAACTTGATTGACGAGCCGACGGATCGTATGCTTAAGTCCCTATCGATAGACTAATTCCAACGGGCATGCTAACCCGCTTAATGTCGTGTACATCGTTGTGATAGGAAACCTATTCTGCACAAATCGGTCAGAATTCCAGAGCTGATTAAGCCAAACTACTACAAAGCGAGGGGTATTGGGGAGGTTCCACACATTACTATTACTACTACCTTGGTGTGCTTTTTTATACTGTATTTTTAAGAACCTGGTATTATACACTCTCTATCACTGCTTTATGCTGGTTAGTAT] [+] EMBL BM576674 [CCGCGGACGCGTGGGCTCGCACGGTACAGTACGGTAGTCGCACGGTTCTTCATTCAGATTTTGCCGACTGATTCATCAGCAAGTCCAACCCATCAAAACGATGGAGCACGATTTGGGCTACGACCTAGCAGAGGCACTCGAGCGAGAAGATCTATCCCGGGAGGATTTGAAAGCGCTGCGTCAGCCACCGGTCGAGGGCGTGCCGGCAACGATCACCGACAAACAGTTGGCCTGCTTCCTGGATGCGTGCGATAAGAACATCGACGAGACGCGCAAAGTGCTGAAAATTTACTACGAAGCGCGCAAAAATGGACCGGAACTGTTTAACAATCGTGATCCGCACAGTGCCGCCATTCAGCAGTGTCTGCAAAATCAAGACTACTTCCCACTTCCACCCACCCCGAGCGGGTATTCGGTGGTGTTTCATCGGTTGAAAAACTCCCGCTCCTCCAACTATCACTTTGACGAAGCGATCAAGACGTACTTCATGACGATCGACTCCTGCCTGTACACGCA GGGCACCGCGGCCGGGCATCATCTTCCTGTTCGACATGAAGAACGTCGGGCTGATGCATCTGACCCGCATCAACATGAGCTCGGTGCGAAAGTTTTTCCACTACCTGCAGGACGGGCTGCCGGCGAAGCTGAAAGCGATACACGTGATGAACGTGGTGTCGTTCT ] [+] EMBL BM639617 [ ccGCTCGCACGGTACAGTACGGTAGTCGCACGGTTCTTCATTCAGATTTTGCCGACTGATTCATCAGCAAGTCCAACCCATCAAAACGATGGAGCACGATTTGGGCTACGACCTAGCAGAGGCACTCGAGCGAGAAGATCTATCCCGGGAGGATTTGAAAGCGCTGCGTCAGCCACCGGTCGAGGGCGTGCCGGCAACGATCACCGACAAACAGTTGGCCTGCTTCCTGGATGCGTGCGATAAGAACATCGACGAGACGCGCAAAGTGCTGAAAATTTACTACGAAGCGCGCAAAAATGGACCGGAACTGTTTAACAATCGTGATCCGCACAGTGCCGCCATTCAGCAGTGTCTGCAAAATCAAGACTACTTCCCACTTCCACCCACCCCGAGCGGGTATTCGGTGGTGTTTCATCGGTTGAAAAACTCCCGCTCCTCCAACTATCACTTTGACGAAGCGATCAAGACGTACTTCATGACGATCGACTCCTGCCTGTACACGCAGGGG ACCGCGGCCGGGCATCATCTTCCTGTTCGACATGAAGAACGTCGGGCTGATGCATCTGACCCGCATCAACATGAGCTCGGTGCGAAAGTTTTTCCACTACCTGCAGGA ] [+] EMBL BM628460 [ ccgGGCAACGATCACCGACAAACAGTTGGCCTGCTTCCTGGATGCGTGCGATAAGAACATCGACGAGACGCGCAAAGTGCTGAAAATTTACTACGAAGCGCGCAAAAATGGACCGGAACTGTTTAACAACCGTGATCCGCACAGTGCCGCCATTCAGCAGTGTCTGCAAAATCAAGACTACTTCCCACTTCCACCCACCCCGAGCGGGTATTCGGTGGTGTTTCATCGGTTGAAAAACTCCCGCTCCTCCAACTATCACTTTGACGAAGCGATCAAGACGTACTTCATGACGATCGACTCCTGCCTGTACACGCA GGG ACCGCGGCCGGGCATCATCTTCCTGTTCGACATGAAGAACGTCGGACTGATGCATCTGACCCGCATCAACATGAGCTCGGTGCGAAAGTTTTTCCACTACCTGCAGGAAGGGCTGCCGGCGAAGCTGAAAGCGATACACGTGATGAACGTGGTGTCGTTCTTCGATAAGATCCTTTACATCATAAAACCCTTCATTCACGCGGAAATCCTCAATGTGCTCTACCTGCACACTTCTAGCGCCAATTTGGATTCGTTCTACGAGGAGTGGATACCGAAGAGTGGGCTGCCGTCCGATCTTGGCGGAGATATGAAATCGATCGACGAGCTTCACCAGGACCATCTGAAGGAGTTCGAAAGGCTGAGACCGTACTTC ] [+] EMBL BX625696 [ ggCGAGCGGGTATTCGGTGGTGTTTCATCGGTTGAAAAACTCCCGCTCCTCCAACTATCACTTTGACGAAGCGATCAAGACGTACTTCATGACGATCGACTCCTGCCTGTACACGCA GGG ACCGCGGCCGGGCATCATCTTCCTGTTCGACATGAAGAACGTCGGGCTGATGCATCTGACCCGCATCAACATGAGCTCGGTGCGAAAGTTTTTCCACTACCTGCAGGACGGGCTGCCGGCGAAGCTGAAAGCGATACACGTGATGAACGTGGTGTCGTTCTTCGATAAGATCCTTTACATCATAAAACCCTTTATTCACGCGGAAATCCTCAATGTGCTCTACCTGCACACTTCTAGCGCCAATTTGGATTCGTTCTACGAGGAGTGGATACCGAAGAGTGGGCTGCCGTCCGATCTTGGCGGAGATATGAAATCGATCGACGAGCTTCACCAGGACCATCTGAAGGAGTTCGAAAGGCTGAGACCGTACTTCCTCGCCGAGGAGCGTCAACGCAATGGCGAAGCCGGCAACTTGATTGACGAGCCGACGGATCGTATGCTTAAGTCCCTATCGATAGACTAATTCCAACGGGCATGCTAACCCGCTTAATGTCGTGTACATCGTTGTGATAGGAAACCTATTCTGCACAAATCGGTCAGAATTCCAGAGCTGATTAAGCCAAACTACTACAAAGCGAGGGGTATTGGGGAGGTTCCACACATTACTATTACTACTACCTTGGTGTGCTTTTTTATACTGTATTTTTAAGAACCTGGTATTATACACTCTCTATCACTGCTTTATGCTGGTTAGTAT] consensusID : consensus_7812#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 740 fasta sequence [GTCAGCCCTTTGCCGGTGTAAAGTGTGACGCAAGATGATTGCGCACCATAATCCTTCAATAAATCGTCGTTATTTTTAATCGCTCGGATACTGATACTTACGTTCCGCTGACCGTGTTTTAAGCAATGAGCTTTAATGCTAGGATTTGAAGCGCAAAGAAGCCGCGCGGTGGGAGCGGTAAAAGCCCATCATGTCGGGTCCAACCCATCCAACCCATCAAAACGATGGAGCACGATTTGGGCTACGACCTAGCAGAGGCACTCGAGCGAGAAGATCTATCCCGGGAGGATTTGAAAGCGCTGCGTCAGCCACCGGTCGAGGGCGTGCCGGCAACGATCACCGACAAACAGTTGGCCTGCTTCCTGGATGCGTGCGATAAGAACATCGACGAGACGCGCAAAGTGCTGAAAATTTACTACGAGGCGCGCAAAAATGGACCAGAACTGTTTAACAACCGTGATCCGCACAGTGCCGCCATTCAGCAGTGTCTTCAAAATCAAGACTACTTCCCACTTCCACCCACCCCGAGCGGGTATTCGGTGGTGTTTCATCGGTTGAAAAACTCCCGCTCCTCCAACTATCACTTTGACGAAGCGATCAAAACGTACTTCATGACGATCGACTCCTGCCTGTACACGCAGGGACCGCGGCCGGGCATCATCTTCCTGTTCGACATGAAGAACGTCGGACTGATGCATCTGACCCGCATCAACATGAGCTCGGTGCGAAAGTTTTTCCAC] [+] EMBL BX604893 [GTCAGCCCTTTGCCGGTGTAAAGTGTGACGCAAGATGATTGCGCACCATAATCCTTCAATAAATCGTCGTTATTTTTAATCGCTCGGATACTGATACTTACGTTCCGCTGACCGTGTTTTAAGCAATGAGCTTTAATGCTAGGATTTGAAGCGCAAAGAAGCCGCGCGGTGGGAGCGGTAAAAGCCCATCATGTCGGGTCCAACCCATCCAACCCATCAAAACGATGGAGCACGATTTGGGCTACGACCTAGCAGAGGCACTCGAGCGAGAAGATCTATCCCGGGAGGATTTGAAAGCGCTGCGTCAGCCACCGGTCGAGGGCGTGCCGGCAACGATCACCGACAAACAGTTGGCCTGCTTCCTGGATGCGTGCGATAAGAACATCGACGAGACGCGCAAAGTGCTGAAAATTTACTACGAGGCGCGCAAAAATGGACCAGAACTGTTTAACAACCGTGATCCGCACAGTGCCGCCATTCAGCAGTGTCTTCAAAATCAAGACTACTTCCCACTTCCACCCACCCCGAGCGGGTATTCGGTGGTGTTTCATCGGTTGAAAAACTCCCGCTCCTCCAACTATCACTTTGACGAAGCGATCAAAACGTACTTCATGACGATCGACTCCTGCCTGTACACGCAGGGACCGCGGCCGGGCATCATCTTCCTGTTCGACATGAAGAACGTCGGACTGATGCATCTGACCCGCATCAACATGAGCTCGGTGCGAAAGTTTTTCCAC] [+] EMBL BX603747 [ tggccaGTCCAACCCATCCAACCCATCAAAACGATGGAGCACGATTTGGGCTACGACCTAGCAGAGGCACTCGAGCGAGAAGATCTATCCCGGGAGGATTTGAAAGCGCTGCGTCAGCCACCGGTCGAGGGCGTGCCGGCAACGATCACCGACAAACAGTTGGCCTGCTTCCTGGATGCGT ] [+] EMBL BX601970 [ AGAAGATCTATCCCGGGAGGATTTGAAAGCGCTGCGTCAGCCACCGGTCGAGGGCGTGCCGGCAACGATCACCGACAAACAGTTGGCCTGCTTCCTGGATGCGTGCGATAAGAACATCGACGAGACGCGCAAAGTGCTGAAAATTTACTACGAGGCGCGCAAAAATGGACCAGAACTGTTTAACAACCGTGATCCGCACAGTGgcc ] consensusID : consensus_7812#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 500 fasta sequence [CCGAGGTTAACGGGTACAGTACGGTAGTCGCACGGTTCTTCATTCAGATTTTGCCGACTGATTCATCAGCAAGTCCAACCCATCAAAACGATGGAGCACGATTTGGGCTACGACCTAGCAGAGGCACTCGAGCGAGAAGATCTATCCCGGGAGGATTTGAAAGCGCTGCGTCAGCCACCGGTCGAGGGCGTGCCGGCAACGATCACCGACAAACAGTTGGCCTGCTTCCTGGATGCGTGCGATAAGAACATCGACGAGACGCGCAAAGTGCTGAAAATTTACTACGAAGCGCGCAAAAATGGACCGGAACTGTTTAACAATCGTGATCCGCACAGTGCCGCCATTCAGCAGTGTCTGCAAAATCAAGACTACTTCCCACTTCCACCCACCCCGAGCGGGTATTCGGTGGTGTTTCATCGGTTGAAAAACTCCCGCTCCTCCAACTATCACTTTGACGAAGCGATCAAGACGTACTTCATGACGATCGACTCCTGGCCTGT] [+] EMBL AL932206 [CCGAGGTTAACGGGTACAGTACGGTAGTCGCACGGTTCTTCATTCAGATTTTGCCGACTGATTCATCAGCAAGTCCAACCCATCAAAACGATGGAGCACGATTTGGGCTACGACCTAGCAGAGGCACTCGAGCGAGAAGATCTATCCCGGGAGGATTTGAAAGCGCTGCGTCAGCCACCGGTCGAGGGCGTGCCGGCAACGATCACCGACAAACAGTTGGCCTGCTTCCTGGATGCGTGCGATAAGAACATCGACGAGACGCGCAAAGTGCTGAAAATTTACTACGAAGCGCGCAAAAATGGACCGGAACTGTTTAACAATCGTGATCCGCACAGTGCCGCCATTCAGCAGTGTCTGCAAAATCAAGACTACTTCCCACTTCCACCCACCCCGAGCGGGTATTCGGTGGTGTTTCATCGGTTGAAAAACTCCCGCTCCTCCAACTATCACTTTGACGAAGCGATCAAGACGTACTTCATGACGATCGACTCCTGGCCTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7812#0 ------------------------------------------------------------ consensus_7812#2 ------------------------------------------------------------ consensus_7812#1 GTCAGCCCTTTGCCGGTGTAAAGTGTGACGCAAGATGATTGCGCACCATAATCCTTCAAT 60 consensus_7812#0 ------------------------------------------------------------ consensus_7812#2 ------------------------------------------------------------ consensus_7812#1 AAATCGTCGTTATTTTTAATCGCTCGGATACTGATACTTACGTTCCGCTGACCGTGTTTT 120 consensus_7812#0 ---CCGCGGACGCGTGGGCTCGCAC-GGTACAGTACGGTAGTCGCACGGTTCTT-CATTC 55 consensus_7812#2 ------------CCGAGGTTAACG--GGTACAGTACGGTAGTCGCACGGTTCTT-CATTC 45 consensus_7812#1 AAGCAATGAGCTTTAATGCTAGGATTTGAAGCGCAAAGAAGCCGCGCGGTGGGAGCGGTA 180 * * * * * * * ** *** **** * * consensus_7812#0 AGATTTTGCCG-ACTGATTCATCAGCAAGTCCAACCCATCAAAACGATGGAGCACGATTT 114 consensus_7812#2 AGATTTTGCCG-ACTGATTCATCAGCAAGTCCAACCCATCAAAACGATGGAGCACGATTT 104 consensus_7812#1 AAAGCCCATCATGTCGGGTC--CAACCCATCCAACCCATCAAAACGATGGAGCACGATTT 238 * * * * ** ** * ******************************* consensus_7812#0 GGGCTACGACCTAGCAGAGGCACTCGAGCGAGAAGATCTATCCCGGGAGGATTTGAAAGC 174 consensus_7812#2 GGGCTACGACCTAGCAGAGGCACTCGAGCGAGAAGATCTATCCCGGGAGGATTTGAAAGC 164 consensus_7812#1 GGGCTACGACCTAGCAGAGGCACTCGAGCGAGAAGATCTATCCCGGGAGGATTTGAAAGC 298 ************************************************************ consensus_7812#0 GCTGCGTCAGCCACCGGTCGAGGGCGTGCCGGCAACGATCACCGACAAACAGTTGGCCTG 234 consensus_7812#2 GCTGCGTCAGCCACCGGTCGAGGGCGTGCCGGCAACGATCACCGACAAACAGTTGGCCTG 224 consensus_7812#1 GCTGCGTCAGCCACCGGTCGAGGGCGTGCCGGCAACGATCACCGACAAACAGTTGGCCTG 358 ************************************************************ consensus_7812#0 CTTCCTGGATGCGTGCGATAAGAACATCGACGAGACGCGCAAAGTGCTGAAAATTTACTA 294 consensus_7812#2 CTTCCTGGATGCGTGCGATAAGAACATCGACGAGACGCGCAAAGTGCTGAAAATTTACTA 284 consensus_7812#1 CTTCCTGGATGCGTGCGATAAGAACATCGACGAGACGCGCAAAGTGCTGAAAATTTACTA 418 ************************************************************ consensus_7812#0 CGAAGCGCGCAAAAATGGACCGGAACTGTTTAACAATCGTGATCCGCACAGTGCCGCCAT 354 consensus_7812#2 CGAAGCGCGCAAAAATGGACCGGAACTGTTTAACAATCGTGATCCGCACAGTGCCGCCAT 344 consensus_7812#1 CGAGGCGCGCAAAAATGGACCAGAACTGTTTAACAACCGTGATCCGCACAGTGCCGCCAT 478 *** ***************** ************** *********************** consensus_7812#0 TCAGCAGTGTCTGCAAAATCAAGACTACTTCCCACTTCCACCCACCCCGAGCGGGTATTC 414 consensus_7812#2 TCAGCAGTGTCTGCAAAATCAAGACTACTTCCCACTTCCACCCACCCCGAGCGGGTATTC 404 consensus_7812#1 TCAGCAGTGTCTTCAAAATCAAGACTACTTCCCACTTCCACCCACCCCGAGCGGGTATTC 538 ************ *********************************************** consensus_7812#0 GGTGGTGTTTCATCGGTTGAAAAACTCCCGCTCCTCCAACTATCACTTTGACGAAGCGAT 474 consensus_7812#2 GGTGGTGTTTCATCGGTTGAAAAACTCCCGCTCCTCCAACTATCACTTTGACGAAGCGAT 464 consensus_7812#1 GGTGGTGTTTCATCGGTTGAAAAACTCCCGCTCCTCCAACTATCACTTTGACGAAGCGAT 598 ************************************************************ consensus_7812#0 CAAGACGTACTTCATGACGATCGACTCCTG-CCTGTACACGCAGGGACCGCGGCCGGGCA 533 consensus_7812#2 CAAGACGTACTTCATGACGATCGACTCCTGGCCTGT------------------------ 500 consensus_7812#1 CAAAACGTACTTCATGACGATCGACTCCTG-CCTGTACACGCAGGGACCGCGGCCGGGCA 657 *** ************************** ***** consensus_7812#0 TCATCTTCCTGTTCGACATGAAGAACGTCGGGCTGATGCATCTGACCCGCATCAACATGA 593 consensus_7812#2 ------------------------------------------------------------ consensus_7812#1 TCATCTTCCTGTTCGACATGAAGAACGTCGGACTGATGCATCTGACCCGCATCAACATGA 717 consensus_7812#0 GCTCGGTGCGAAAGTTTTTCCACTACCTGCAGGACGGGCTGCCGGCGAAGCTGAAAGCGA 653 consensus_7812#2 ------------------------------------------------------------ consensus_7812#1 GCTCGGTGCGAAAGTTTTTCCAC------------------------------------- 740 consensus_7812#0 TACACGTGATGAACGTGGTGTCGTTCTTCGATAAGATCCTTTACATCATAAAACCCTTCA 713 consensus_7812#2 ------------------------------------------------------------ consensus_7812#1 ------------------------------------------------------------ consensus_7812#0 TTCACGCGGAAATCCTCAATGTGCTCTACCTGCACACTTCTAGCGCCAATTTGGATTCGT 773 consensus_7812#2 ------------------------------------------------------------ consensus_7812#1 ------------------------------------------------------------ consensus_7812#0 TCTACGAGGAGTGGATACCGAAGAGTGGGCTGCCGTCCGATCTTGGCGGAGATATGAAAT 833 consensus_7812#2 ------------------------------------------------------------ consensus_7812#1 ------------------------------------------------------------ consensus_7812#0 CGATCGACGAGCTTCACCAGGACCATCTGAAGGAGTTCGAAAGGCTGAGACCGTACTTCC 893 consensus_7812#2 ------------------------------------------------------------ consensus_7812#1 ------------------------------------------------------------ consensus_7812#0 TCGCCGAGGAGCGTCAACGCAATGGCGAAGCCGGCAACTTGATTGACGAGCCGACGGATC 953 consensus_7812#2 ------------------------------------------------------------ consensus_7812#1 ------------------------------------------------------------ consensus_7812#0 GTATGCTTAAGTCCCTATCGATAGACTAATTCCAACGGGCATGCTAACCCGCTTAATGTC 1013 consensus_7812#2 ------------------------------------------------------------ consensus_7812#1 ------------------------------------------------------------ consensus_7812#0 GTGTACATCGTTGTGATAGGAAACCTATTCTGCACAAATCGGTCAGAATTCCAGAGCTGA 1073 consensus_7812#2 ------------------------------------------------------------ consensus_7812#1 ------------------------------------------------------------ consensus_7812#0 TTAAGCCAAACTACTACAAAGCGAGGGGTATTGGGGAGGTTCCACACATTACTATTACTA 1133 consensus_7812#2 ------------------------------------------------------------ consensus_7812#1 ------------------------------------------------------------ consensus_7812#0 CTACCTTGGTGTGCTTTTTTATACTGTATTTTTAAGAACCTGGTATTATACACTCTCTAT 1193 consensus_7812#2 ------------------------------------------------------------ consensus_7812#1 ------------------------------------------------------------ consensus_7812#0 CACTGCTTTATGCTGGTTAGTAT 1216 consensus_7812#2 ----------------------- consensus_7812#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||