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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7817#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 795 fasta sequence
[GAGGCCAAGAATCCCGCACGATNGGTGACAACGAGCAGATGATCGACGGGAAAAACAAAAACACGAAATACTTCCTCGCATGAAACGACTGCTGGCCACAAATATAAGCAAAATCATGAAGTT-TATCGACATTGGCGCCAACTTAACCGATCCGATGTACCAA-GGAATCTACAACGGATCGGCCAAACACGAACCCGATCTGCCGCATGTGCTAGAGCGCAGCTGGACCGGTGGGTTGGACAAAATCATCATCACGGTCGGGACGCTTGCCGACTGTGCGCCAACGTTTGAGATAGTGAAGAACGATGAAAGGCTGTTCGCCACGGTCGGTTGCCATCCGACACGGTGCGGTGAGTTTGTACCGGATCCGGAAGGTTATTTCGCCTCGCTCTGCCAGCAGATCGAGCAGCACCGGGAGAAGGTGGTAGCGATCGGCGAGTGTGGCCTCGATTACGATCGGCTGCAGTTCTGCGACAAAGCGATCCAGCAGCAGTACTTCGAGAAGCAGCTCGAGCTGGCCGCCAGGTACGATCTCC-C-GCTGTTCCTGCACTGCCGCAAC-GCGCACGACGACTTTGTCGCCA-TACTGC-AGCGAAACCGGGACAAGCTGCCCCGGCGTGGTGTGGTGCACACG-TTCGACGGTTCGCTCGAGGTGGCGGAAGCGCTTATAGCGGACGGGTACGCAATCGGGATCAACGGTTGTTCGCTGAAGACGGAGGAAAATCTGTCCGTGGCGGCCAAAATTCCGGACGCATCGATCATGCTCGAAACGGACAGCCCGTGGTGCGAGATACGGGC]
[+] EMBL BX468233 [GAGGCCAAGAATCCCGCACGATNGGTGACAACGAGCAGATGATCGACGGGAAAAACAAAAACACGAAATACTTCCTCGCATGAAACGACTGCTGGCCACAAATATAAGCAAAATCATGAAGTT TATCGACATTGGCGCCAACTTAACCGATCCGATGTACCAA GGAATCTACAACGGATCGGCCAAACACGAACCCGATCTGCCGCATGTGCTAGAGCGCAGCTGGACCGGTGGGTTGGACAAAATCATCATCACGGTCGGGACGCTTGCCGACTGTGCGCCAACGTTTGAGATAGTGAAGAACGATGAAAGGCTGTTCGCCACGGTCGGTTGCCATCCGACACGGTGCGGTGAGTTTGTACCGGATCCGGAAGGTTATTTCGCCTCGCTCTGCCAGCAGATCGAGCAGCACCGGGAGAAGGTGGTAGCGATCGGCGAGTGTGGCCTCGATTACGATCGGCTGCAGTTCTGCGACAAAGCGATCCAGCAGCAGTACTTCGAGAAGCAGCTCGAGCTGGCCGCCAGGTACGATCTCCGCGGCTGTTCCTGCACTGNCGCAACGGCGCACGACGACTTTACCGGCAGTACTGCAAGCGAAACC GGACAAGCTGCCCC ]
[+] EMBL BX622266 [ CTGGCCACAAATATAAGCAAAATCATGAAGTT TATCGACATTGGCGCCAACTTAACCGATCCGATGTACCAA GGAATCTACAACGGATCGGCCAAACACGAACCCGATCTGCCACATGTGCTAGAGCGTAGCTGGACCGGTGGGTTGGACAAAATCATCATCACGGTCGGGACGCTTGCCGACTGTGCGCCAACGTTTGAGATAGTGAAGAACGATGAAAGGCTGTTCGCCACGGTCGGCTGCCATCCGACACGGTGCGGTGAGTTTGTACCGGATCCGGAAGGTTATTTCGCCTCGCTCTGCCAGCAGATCGAGCAGCACCGGGAGAAGGTGGTAGCGATCGGCGAGTGTGGCCTCGATTACGATCGGCTGCAGTTCTGCGACAAAGCGATCCAGCAGCAGTACTTCGAGAAGCAGCTCGAGCTGGCCGCCAGGTACGATCTCC C GCTGTTCCTGCACTGCCGCAAC GCGCACGACGACTTTGTCGCCA TACTGC AGCGAAACCGGGACAAGCTGCCCCGGCGTGGTGTGGTGCACACG TTCGACGGTTCGCTCGAGGTGGCGGAAGCGCTTATAGCGGACGGGTACGCAATCGGGATCAACGGTTGTTCGCTGAAGACGGAGGAAAATCTGTCCGTGGCGGCCAAAATTCCGGACGCATCGATCATGCTCGAAACGGACAGCCCGTGGTGCGAGATACGGGC]
[+] EMBL AL933258 [ tcccccgAGTTNTATCGACATTGGCGCC ACTTAACCGATCCGATGTACCAAGGGAATCTACAACGGATCGG CAAACACGAACCCGATCTGCCACATGTGCTA AGCGTAGCTGGACCGGTGGGTTGGACAAAATCATCATCACGGTCGGGACGCTTGCCGACTGTGCGCCAACGTTTGAGATAGTGAAGAACGATGAAAGGCTGTTCGCCACGGTCGGCTGCCATCCGACACGGTGCGGTGAGTTTGTACCGGATCCGGAAGGTTATTTCGCCTCGCTCTGCCAGCAGATCGAGCAGCACCGGGAGAAGGTGGTAGCGATCGGCGAGTGTGGCCTCGATTACGATCGGCTGCAGTTCTGCGACAAAGCGATCCAGCAGCAGTACTTCGAGAAGCAGCTCGAGCTGGCCGCCAGGTACGATCTCC C GCTGTTCCTGCACTGGCGCAAC GCGCACGACGACTTTGTCGCCA TACTGC AGCGAAACCGGGACAAGCTGCCCCGGCGTGGTGTGGTGCACACGTTTCGACGGTTCGCTCG ]
[+] EMBL AGA285178 [ TGTACCAA GGAATCTACAACGGATCGGCCAAACACGAACCCGATCTGCCGCATGTGCTAGAGCGCAGCTGGACCGGTGGGTTGGACAAAATCATCATCACGGTCGGGACGCTTGCCGACTGTGCGCCAACGTTTGAGATAGTGAAGAACGATGAAAGGCTGTTCGCCACGGTCGGTTGCCATCCGACACGGTGCGGTGAGTTTGTACCGGATCCGGAAGGTTATTTCGCCTCGCTCTGCCAGCAGATCGAGCAGCACCGGGAGAAGGTGGTAGCGATCGGCGAGTGTGGCCTCGATTACGATCGGCTGCAGTTCTGCGACAAAGCGATCCAGCAGCAGTACTTCGAGAAGCAGCTCGAGCTGGCCGCCAGGTACGATCTCC C GCTGTTCCTGCACTGCCGCAAC GCGCA ]
consensusID : consensus_7817#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[GCCCAGGCTTTTTAAACGACTGCTGGCCACAAATATAGCAAAATCATTAAGTTTATCTGACATTGGCGCCAACTTAACCGATCCGATGTACCAAGGAATCTACAACGGATCGGCCAAACACGAACCCGATCTGCCACATGTGCTAGAGCGTAGCTGGACCGGTGGGTTGGACAAAATCATCATCACGGTCGGGACGCTTGCCGACTGTGCGCCAACGTTTGAGATAGTGAAGAACGATGGCTGTTCGCCACGGTCGGCTGCCATCCGACACTGGTGCGGTGAGTTTGTACCGGATCCGGAAGGTTATTTCGNCTCGCTCTGCCAGCAGATCGAGCAGCACCGGGAGAAGGTGGTAGCGATCGGCCGAGTGTGGGCTCGATTACGATCGGCTGCAGTTCTGCGACAAAGCGATCCAGCAGCAGTACTTCGAGAAGCAGCTCGAGCTGGCGCCAGGTACGATCTCCCGCTGTTCCTGCACTGGCGGGAACGCGCACGACGACTTTGTCGCCATACTGCAGCGAAAACGGGACAAGCTGGCCCGGCGTGGTGTGGTGCACACGTTCGACGGTTCGATCGANAGTGGCTGGAAGCGCTTATTAGCGGACGGGTACGCAATCGGGATCAACGGATGTTCGCTGAAGACGGAGGAAAATCTGTCCGTGGCGGCAAAATTCCGGGACGGCANTTCGAT]
[+] EMBL AL697629 [GCCCAGGCTTTTTAAACGACTGCTGGCCACAAATATAGCAAAATCATTAAGTTTATCTGACATTGGCGCCAACTTAACCGATCCGATGTACCAAGGAATCTACAACGGATCGGCCAAACACGAACCCGATCTGCCACATGTGCTAGAGCGTAGCTGGACCGGTGGGTTGGACAAAATCATCATCACGGTCGGGACGCTTGCCGACTGTGCGCCAACGTTTGAGATAGTGAAGAACGATGGCTGTTCGCCACGGTCGGCTGCCATCCGACACTGGTGCGGTGAGTTTGTACCGGATCCGGAAGGTTATTTCGNCTCGCTCTGCCAGCAGATCGAGCAGCACCGGGAGAAGGTGGTAGCGATCGGCCGAGTGTGGGCTCGATTACGATCGGCTGCAGTTCTGCGACAAAGCGATCCAGCAGCAGTACTTCGAGAAGCAGCTCGAGCTGGCGCCAGGTACGATCTCCCGCTGTTCCTGCACTGGCGGGAACGCGCACGACGACTTTGTCGCCATACTGCAGCGAAAACGGGACAAGCTGGCCCGGCGTGGTGTGGTGCACACGTTCGACGGTTCGATCGANAGTGGCTGGAAGCGCTTATTAGCGGACGGGTACGCAATCGGGATCAACGGATGTTCGCTGAAGACGGAGGAAAATCTGTCCGTGGCGGCAAAATTCCGGGACGGCANTTCGAT]
consensusID : consensus_7817#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence
[CCGGTTCGGTGGGCTGCACTTCTTCAACCCCGTGCCGGTCATGAAGCTGCTCGAGATCATCCGCACCGACCGGACGTCGGACGAAACGTTCCAGGCGCTGCAGGCGTTCGGACAGCGGCTGGGCAAGGCCTGCATCACGTGCAAGGATACGCCCGGGTTCGTGGTGAACCGGCTGCTCGTGCCGTACATGGCGGAAGCGATCCGGCTGCTCGAGCGGGGCGATGCGTCGCCGCGCGACATCGACACGGCGATGAAGCTCGGCGCCGGCTACCCGATGGGACCGATCGAGCTGGTCGACTACGTCGGGCTGGACACGACCAACAACATCCTACAGGGATGGCACGAGAAGTTCCCGAACGATCCGCTGTTTGTGCCGATCCAGTCGCTCCAGAAGCTCGTCAGCGAGGGCAAACTGGGGGTGAAGAGTGGCGAAGGGTTCTATTCCTACAAAAAGTGAGCCAAGGAGAGAGAGAGACGCTGAGGATG]
[+] EMBL BM590133 [CCGGTTCGGTGGGCTGCACTTCTTCAACCCCGTGCCGGTCATGAAGCTGCTCGAGATCATCCGCACCGACCGGACGTCGGACGAAACGTTCCAGGCGCTGCAGGCGTTCGGACAGCGGCTGGGCAAGGCCTGCATCACGTGCAAGGATACGCCCGGGTTCGTGGTGAACCGGCTGCTCGTGCCGTACATGGCGGAAGCGATCCGGCTGCTCGAGCGGGGCGATGCGTCGCCGCGCGACATCGACACGGCGATGAAGCTCGGCGCCGGCTACCCGATGGGACCGATCGAGCTGGTCGACTACGTCGGGCTGGACACGACCAACAACATCCTACAGGGATGGCACGAGAAGTTCCCGAACGATCCGCTGTTTGTGCCGATCCAGTCGCTCCAGAAGCTCGTCAGCGAGGGCAAACTGGGGGTGAAGAGTGGCGAAGGGTTCTATTCCTACAAAAAGTGAGCCAAGGAGAGAGAGAGACGCTGAGGATG]
consensusID : consensus_7817#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 410 fasta sequence
[GGGTGATGCGGTGCGGTGCGCTGCGTCCTTGGCGGAGGGATGATATCAAAGATGTAGCATAACAAAGACGTAATAAGCTCTTAGTGCTCTAGTGTTGCCATAATTAGTAGTATGTACAACAAAGTGTCTCCGCTCTGGCCCCGCTATCCCCTATTACAACAACACCCCTCGAACAGTTTTTATATATTTTTCGCACACACACACACTCACTAGCAATAGAGCAACAAACACGCGCCTGTGGTGATAGCAAGAGAGAAAATGGTGCGTGTGGTGTTCTGTTGTGGTTCGATGCATCGGAAGCATGCCCGATAAAGATTGGCTTGCAGAAGAGAAGACTCCGTTACGACCCGATACAATATGATACGTTATTTATCTGAAGCAATGCGCGGGATGGTGGTTTTGGAATCGTT]
[+] EMBL AGA285467 [GGGTGATGCGGTGCGGTGCGCTGCGTCCTTGGCGGAGGGATGATATCAAAGATGTAGCATAACAAAGACGTAATAAGCTCTTAGTGCTCTAGTGTTGCCATAATTAGTAGTATGTACAACAAAGTGTCTCCGCTCTGGCCCCGCTATCCCCTATTACAACAACACCCCTCGAACAGTTTTTATATATTTTTCGCACACACACACACTCACTAGCAATAGAGCAACAAACACGCGCCTGTGGTGATAGCAAGAGAGAAAATGGTGCGTGTGGTGTTCTGTTGTGGTTCGATGCATCGGAAGCATGCCCGATAAAGATTGGCTTGCAGAAGAGAAGACTCCGTTACGACCCGATACAATATGATACGTTATTTATCTGAAGCAATGCGCGGGATGGTGGTTTTGGAATCGTT]
[+] EMBL AGA281905 [ TTTTTTTTTTTTTCGCACACACACACACTCACTAGCAATAGAGCAACAAACACGCGCCTGTGGTGATAGCAAGAGAGAAAATGGTGCGTGTGGTGTTCTGTTGTGGTTCGATGCATCGGAAGCATGCCCGATAAAGATTGGCTTGCAGAAGAGAAGACTCCGTTACGACCCGATACAATATGAT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7817#0 GAGGCCAAGAATCCCGCACGATNGGTGACAACGAGCAGATGATCGACGGGAAAAACAAAA 60
consensus_7817#1 ------------------------------------------------------------
consensus_7817#2 ------------------------------------------------------------
consensus_7817#3 ------------------------------------------------------------
consensus_7817#0 ACACGAAATACTTCCTCGCATGAAACGACTGCTGGCCACAAATATAAGCAAAATCATGAA 120
consensus_7817#1 ---------GCCCAGGCTTTTTAAACGACTGCTGGCCACAAATATA-GCAAAATCATTAA 50
consensus_7817#2 ------------------------------------------------------------
consensus_7817#3 ------------------------------------------------------------
consensus_7817#0 GTTTATC-GACATTGGCGCCAACTTAACCGATCCGATGTACCAAGGAATCTACAACGGAT 179
consensus_7817#1 GTTTATCTGACATTGGCGCCAACTTAACCGATCCGATGTACCAAGGAATCTACAACGGAT 110
consensus_7817#2 ------------------------------------------------------------
consensus_7817#3 ------------------------------------------------------------
consensus_7817#0 CGGCCAAACACGAACCCGATCTGCCGCATGTGCTAGAGCGCAGCTGGACCGGTGGGTTGG 239
consensus_7817#1 CGGCCAAACACGAACCCGATCTGCCACATGTGCTAGAGCGTAGCTGGACCGGTGGGTTGG 170
consensus_7817#2 ----------CCGGTTCGGTGGGCTGCACTTCTTCAACCCCGTGCCGGTCATGAAGCTGC 50
consensus_7817#3 -----------------------------------------GGGTGATGCGGTGCGGTGC 19
* * **
consensus_7817#0 ACAAAATCATCATCACGGTCGGGACGCTTGCCGACTGTGCGCCAACGTTTGAGATAGTGA 299
consensus_7817#1 ACAAAATCATCATCACGGTCGGGACGCTTGCCGACTGTGCGCCAACGTTTGAGATAGTGA 230
consensus_7817#2 TCGAGATCATCCGCACCGACCGGACGTCGGACGA---------AACGTTCCAGGCGCTGC 101
consensus_7817#3 GCTGCGTCCTTGGCGGAGGGATGATATCA--------------AAGATGTAGCATAACAA 65
* ** * * * ** ** *
consensus_7817#0 AGAACGA-TGAAAGGCTGTTCGCCACGGTCGGTTGCCATCCGACAC-GGTGCGGT-GAGT 356
consensus_7817#1 AGAACGA-TG----GCTGTTCGCCACGGTCGGCTGCCATCCGACACTGGTGCGGT-GAGT 284
consensus_7817#2 AGGCGTT-CGGACAGCGGCTGGGCAAGGCCTGC-ATCACGTG-CAAGGATACGCCCGGGT 158
consensus_7817#3 AGACGTAATAAGCTCTTAGTGCTCTAGTGTTGCCATAATTAGTAGTATGTACAACAAAGT 125
** * * * * * * * * **
consensus_7817#0 TTGTACCGGATCCGGAAGGTTATTTCGCCTCGCTCTGCCAGCAGATCGAGCAGCACCGGG 416
consensus_7817#1 TTGTACCGGATCCGGAAGGTTATTTCGNCTCGCTCTGCCAGCAGATCGAGCAGCACCGGG 344
consensus_7817#2 TCGTGGTGAA-CCGGCTGCTCGTGCCGTA-CATGGCGGAAGC-GATCCGGCTGCTC---G 212
consensus_7817#3 GTCT-CCGCTCTGGCCCCGCTATCCCCTATTACAACAACACC-CCTCGAACAGTTTT--- 180
* * * * * * * ** * *
consensus_7817#0 AGAAGGTGGTAGCGATCGGC-GAGTGTGGCCTCGATTACGATCG-GCTGCAGTTCTGCGA 474
consensus_7817#1 AGAAGGTGGTAGCGATCGGCCGAGTGTGGGCTCGATTACGATCG-GCTGCAGTTCTGCGA 403
consensus_7817#2 AGCGGGGCGATGCG-TCGCC---GCGCGACATCGAC-ACGGC---GATGAAGCTCGGCGC 264
consensus_7817#3 -----TATATATTTTTCGCACACACACACACTCACTAGCAATAGAGCAACAAACACGCGC 235
*** ** * * * ***
consensus_7817#0 CAAAGCGATCCAGCAGCAGTACTTCGAGAAGCAGCTCGAGCTGGCCGCCAGGTACGATCT 534
consensus_7817#1 CAAAGCGATCCAGCAGCAGTACTTCGAGAAGCAGCTCGAGCTGGC-GCCAGGTACGATCT 462
consensus_7817#2 CG--GCTACCCGATGGGACCGATCGAGCTGGTCGACTACGTCGG--GCTGGACACGACCA 320
consensus_7817#3 C-------TGTGGTGATAGCAAGAGAGAAAATGGTGCGTG-TGGTGTTCTGTTGTGGTTC 287
* * * * ** * *
consensus_7817#0 CCCGCTGTTCCTGCACTGCCGC-AACGCGCACGACGACTTTGTCGCCATACTGCAGCGAA 593
consensus_7817#1 CCCGCTGTTCCTGCACTGGCGGGAACGCGCACGACGACTTTGTCGCCATACTGCAGCGAA 522
consensus_7817#2 ACAAC--ATCCTACAGGGATG-------GCACGAGAAGTTCCCGAACGATCCGCTGTTTG 371
consensus_7817#3 GATGCATCGGAAGCATGCCCG---------ATAAAGATTGGCTTGCAGAAGAGAAG--AC 336
* ** * * * * * * *
consensus_7817#0 ACCGGGACAAGCTGCCCCGGCGTGGTGTGGTGCACACGTTCGACGGTTCGCTCGAG-GTG 652
consensus_7817#1 AACGGGACAAGCTGGCCCGGCGTGGTGTGGTGCACACGTTCGACGGTTCGATCGANAGTG 582
consensus_7817#2 TGCCGATCCAGTCGCTCCAG---AAGCTCGTCAGCGAGGGCAAACTGGGGGTGAAGAGTG 428
consensus_7817#3 TCCGTTACGACCCGATACAATATGATACGTTATTTATCTGAAGCAATGCGCGGGATGGTG 396
* * * * * * * * ***
consensus_7817#0 GC-GGAAGCGCTTAT-AGCGGACGGGTACGCAATCGGGATCAACGGTTGTTCGCTGAAGA 710
consensus_7817#1 GCTGGAAGCGCTTATTAGCGGACGGGTACGCAATCGGGATCAACGGATGTTCGCTGAAGA 642
consensus_7817#2 GCGAAGGGTTCTATTCCTACAAAAAGTGAGCCAAGGAGAGAGAGAGA----CGCTGAGGA 484
consensus_7817#3 GTTTTGGAATCGTT---------------------------------------------- 410
* *
consensus_7817#0 CGGAGGAAAATCTGTCCGTGGCGGCCAAAATTCCGGACGCATCGATCATGCTCGAAACGG 770
consensus_7817#1 CGGAGGAAAATCTGTCCGTGGCGGCAAAATTCCGGGACGGCANTTCGAT----------- 691
consensus_7817#2 TG---------------------------------------------------------- 486
consensus_7817#3 ------------------------------------------------------------
consensus_7817#0 ACAGCCCGTGGTGCGAGATACGGGC 795
consensus_7817#1 -------------------------
consensus_7817#2 -------------------------
consensus_7817#3 -------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||