These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7836#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1459 fasta sequence [GTGTCTGTGTTTCGGTCCCTTGTTTTCCCGTGTGTGGTTCTCCCTTCCGGTGTGTGTGTGTGTGTTGCTCCGTACCCCCGTTTCGGCAGACCCGGACGGCCCTTCCCGTGTGTCGCAGTGTCCTTCGCGAATGTGCGGCTGTGCGTGAACCCGTGTGCCACACTGCGGCACCGTAAGTGTTGCCGGGTCAGTTAAGGCGGCGAGTTCGACTGTCCAACCACAAGCATCAAGCAACGCTGCTCAGCACCAATCAACCCGAACGCCACACAAGCACAGCACCAGGCGACCAGCTAGCGCTCTCCAGCAAGGGAACGGAAAAGAAGAAAACACACTTGTCCCATCAGCAAACAAAAGAGAAGAAAAAAAGAACAAAGCCACTGGGAACGTCTCTTTGCCCATCGTGCACGCGCGCGCCTTCTCCTTAGCAACTGCC-GGCTTCC-GGAACTGGCAGGCGAACGAGTGTGGCTT-GGATTAAC-AGTCCACCGGTTAGCACCCCAATG-CCCCAATGGCTTCCAGGCTGCTGCAGGAGTAGTATCTCCCGAGACAGCGGACATCACGCTACGATAACAACCGACCGCAACCGGGGAGAAACACGTTGCGCACACGTTTGATGGGGTTTTTTTTTTTCTTCACACACAAGCACTTTGTTTGTTCCCAGACGAGATTCAGCGATGCACAAAACAAACAGGACCGCAAACGCACGAGCCGGCCACGCGCGCATGGGTGGCGGGGTCGGGGCTTCGCTACAAATAACAGGAGACGCCCCGTGCTCTGGTAAATATGTGCCTTTGCCGCGTCTGTCGGTTGGGTTTGGGGGGGGGGCGCGTCTTCCCTTGGTCTGATGGCAATGTAACAAATTCTGCAGCGCACAACAACCGACAACGACATCATGATGAGCGTATGTGT-TGATAGGTGGGAATCAAGAAAATCGTTTTTTTTGCTTGTAAATTGGCATACGTTAAGGATGAGACGCAGCGTTACGTG-GTAAAGGCAAATGGTAGGAATGATTGTGTTTAAAGTTCAATGAATGGAATTTAGGTCGAGGTAGGCTTTTACTTCCCCTAGTATTAACTTCAAATCTCAATTACAACTAA-TCGCACAGCTCAGCAGTTGAAACATACAGATGCTGTTAAGGAAGAATGCAGGATACTGAGAAGAATTATGGAGCAGGACTTTACCTTTCCCACAATTCAAAACGATATGTGGTCTCTAACTAAATGTGGTCGTCCTAAATTCCTGTACTTCTAGACTGAACAGTTCCCAACTTCCACCATAGAAGGGTAGTGGGATGTTGGGACTTTTTTATATGCTGCATGTGAGTAACCAACCCTATCCCAGAAAGCTGTGGTCTCGGAATTCGAATCCAACAGAAATTTCTCACAATTTCGAGGACTCTGCGTTCGAGGAGCCACTGAATTGTGATCTTGAGATGAATCCGAATAAATCCTTCAAACCACCT] [+] EMBL BM620972 [GTGTCTGTGTTTCGGTCCCTTGTTTTCCCGTGTGTGGTTCTCCCTTCCGGTGTGTGTGTGTGTGTTGCTCCGTACCCCCGTTTCGGCAGACCCGGACGGCCCTTCCCGTGTGTCGCAGTGTCCTTCGCGAATGTGCGGCTGTGCGTGAACCCGTGTGCCACACTGCGGCACCGTAAGTGTTGCCGGGACAGTTAAGGCGGCGAGTTCGACTGTCCAACCACAAGCATCAAGC ] [+] EMBL CNS08QMW [ CCGTGTG CA ACTGCGGCA CGTAAGTGTTGCCGGGTCAGTTAAGGCGGCGAGTTCGACTGTCCAACCACAAGCATCAAGCAACGCTGCTCAGCACCAATCAACCCGAACGCCACACAAGCACAGCACCAGGCGACCAGCTAGCGCTCTCCAGCAAGGGAACGGAAAAGAAGAAAACACACTTGTCCCATCAGCAAACAAAAGAGAAGAAAAAAAGAACAAAGCCACTGGGAACGTCTCTTTGCCCATCGTGCACGCGCGCGCCTTCTCCTTAGCAACTGCCGGGCTTCCGGGAACTGGCAGGCGAACGAGTGTGGCTT GGATTAACAAGTCCACCGGTTAGCACCCCAATGCCCCCAATGGCTTCCAGGCTGCTGCAGGAGTAGTATCTCCCGAGACAGCGGACATCACGCTACGATAACAACCGACCGCAACCGGGGAGAAACACGTTGCGCACACGTTTGATGGGGTTTTTTTTTTTCTTCACACACAAGCACTTTGTTTGTTCCCAGACGAGATTCAGCGATGCACAAAAAAAACAGGACCGCAAACGCACGAG CGGCCACGCGCGC ] [+] EMBL CNS08FJD [ ACACTGCGGCACCGTAAGTGTTGCCGGGTCAGTTAAGGCGGCGAGTTCGACTGTCCAACCACAAGCATCAAGCAACGCTGCTCAGCACCAATCAACCCGAACGCCACACAAGCACAGCACCAGGCGACCAGCTAGCGCTCTCCAGCAAGGGAACGGAAAAGAAGAAAACACACTTGTCCCATCAGCAAACAAAAGAGAAGAAAAAAAGAACAAAGCCACTGGGAACGTCTCTTTGCCCATCGTGCACGCGCGCGCCTTCTCCTTAGCAACTGCC GGCTTCC GGAACTGGCAGGCGAACGAGTGTGGCTT GGATTAAC AGTCCACCGGTTAGCACCCCAATG CCCCAATGGCTTCCAGGCTGCTGCAGGAGTAGTATCTCCCGAGACAGCGGACATCACGCTACGATAACAACCGACCGCAACCGGGGAGAAACACGTTGCGCACACGTTTGATGGGGTTTTTTTTTTTCTTCACACACAAGCACTTTGTTTGTTCCCAGACGAGATTCAGCGATGCACAAAACAAACAGGACCGCAAACGCACGAGCCGGCCACGCGCGCATGGGTGGCGGGGTCGGGGCTTCGCTACAAATAACAGGAGACGCCCCGTGCTCTGGTAAATATGTGCCTTTGCCGCGTCTGTCGGTTGGGTTTGGGGGGGGGGCGCGTCTTCCCTTGGTCTGATGGCAATGTAACAAATTCTGCAGCGCACAACAACCGACAACGACATCATGATGAGCGTATGTGT TGATAGGTGGGAATCAAGAAAATCGTTTTTTTTGCTTGTAAATTGGCATACGTTAAGGATGAGACGCAGCGTTACGTG GTAAAGGCAAATGGTAGGAATGATTGTGTTTAAAGTTCAATGAATGGAATTTAGGTCGAGGTAGGCTTTTACTT ] [+] EMBL CNS08GJS [ ACTGCGGCACCGTAAGTGTTGCCGGGTCAGTTAAGGCGGCGAGTTCGACTGTCCAACCACAAGCATCAAGCAACGCTGCTCAGCACCAATCAACCCGAACGCCACACAAGCACAGCACCAGGCGACCAGCTAGCGCTCTCCAGCAAGGGAACGGAAAAGAAGAAAACACACTTGTCCCATCAGCAAACAAAAGAGAAGAAAAAAAGAACAAAGCCACTGGGAACGTCTCTTTGCCCATCGTGCACGCGCGCGCCTTCTCCTTAGCAACTGCC GGCTTCC GGAACTGGCAGGCGAACGAGTGTGGCTTAGGATTAAC AGTCCACCGGTTAGCACCCCAATG CCCCAATGGCTTCCAGGCTGCTGCAGGAGTAGTAAATCCCGAGACAGCGGACATCACGCTACGATAACAACCGACCGCAACCGGGGAGAAACACGTTGCGCACACGTTTGATGGGGTTTTTTTTTTTCTTCACACACAAGCACTTTGTTTGTTCCCAGACGAAATTCAGCGATGCACAAAACAAACAGGACCGCAAACGCACGAGCCGGCCACGCGCGCATGGGTGGCGGGGTCGGGGCTTCGCTACAAATAACAGGAGACGCCCCGTGCTCTGGTAAATATGTGCCTTTGCCGCGTCTGTCGGTTGGGTTTGGGGGGGGGGCGC ] [-] EMBL CNS08FJE [ ggTTCGCTACAAATAACAGGAGACCCCCCGTGTTCTGGTAAATTTGTGCCTTTCCCCCCTCTGTCGGTTGGGTTTGGGGGGGGGGCGCGTCTTCCCTTGGTCTGATGGCAATGTAACAAATTCTGCAGCGCACAACAACCGACAACGACATCATGATGAGCGTATGTGTGTGATAGGTGGGAATCAAGAAAATCGTTTTTTTTGCTTGTAAATTGGCATACGTTAAGGATGAGACGCAGCGTTAGCTGTGT AAGGCAAATGGTAGGAATGATTGTGTTTAAAGTTCAATGAATGGAATTTAGGTCGAGGTAGGCTTTTACTTCCCCTAGTATTAACTTCAAATCTCAATTACAACTAA TCGCACAGCTCAGCAGTTGAAACATACAGATGCTGTTAAGGAAGAATGCAGGATACTGAGAAGAATTATGGAGCAGGACTTTACCTTTCCCACAATTCAAAACGATATGTGGTCTCTAACTAAATGTGGTCGTCCTAAATTCCTGTACTTCTAGACTGAACAGTTCCCAACTTCCACCATAGAAGGGTAGTGGGATGTTGGGACTTTTTTATATGCTGCATGTGAGTAACCAACCCTATCCCAGAAAGCTGTGGTCTCGGAATTCGAATCCAACAGAAATTTCTCACAATTTCGAGGACTCTGCGTTCGAGGAGCCACTGAATTGTGATCTTGAGATGAATCCGAATAAATCCTTC ] [-] EMBL CNS08QMX [ AGGTAGGCTTTTACTCCCCCTAGTATTAACTTCAAATCTCAATTACAACTAACTCGCACAGCTCAGCAGTTGAAACATACAGATGCTGTTAAGGAAGAATGCAGGATACTGAGAAGAATTATGGAGCAGGACTTTACCTTTCCCACAATTCAAAACGATATGTGGTCTCTAACTAAATGTGGTCGTCCTAAATTCCTGTACTTCTAGACTGAACAGTTCCCAACTTCCACCATAGAAGGGTAGTGGGATGTTGGGACTTTTTTATATGCTGCATGTGAGTAACCAACCCTATCCCAGAAAGCTGTGGTCTCGGAATTCGAATCCAACAGAAATTTCTCACAATTTCGAGGACTCTGCGTTCGAGGAGCCACTGAATTGTGATCTTGAGATGAATCCGAATAAATCCTTCAAACCACCT] [-] EMBL CNS08GJT [ CTCAATTACAACTAA TCGCACAGCTCAGCAGTTGAAACATACAGATGCTGTTAAGGAAGAATGCAGGATACTGAGAAGAATTATGGAGCAGGACTTTACCTTTCCCACAATTCAAAACGATATGTGGTCTCTAACTAAATGTGGTCGTCCTAAATTCCTGTACTTCTAGACTGAACAGTTCCCAACTTCCCCCATAGAAGGGTAGTGGGATGTTGGGATTTTTTTATATGCTGCATGTGAGTAACCAACCCTATCCCAGAAAGCTGTGGTCTCGGAATTCGAATCCAACAGAAATTTTTCACAATTTCGAGGACTCTGCGTTCGAGGAGCCACTGAATTGTGATCTTGAGATGAATCCGAATAAATCCT ] consensusID : consensus_7836#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [CCGCCGCGAGAGTCGTCCGCGGTCGCCCTGTCTTTTCGTTTGTTGCCCTTTGGTGCATTCGCTCACTTTCTTCGTACCGTAGTGCAAAACCGTGCGTGCATCCGTGTGTGTGTGTGTCTGTGTTTCGGTCCCTTGTTTTCCCGTGTGTGGTTCTCCCTTCCGGTGTGTGTGTTGCTCCGTACCCCCGTTTCGGCAGACCCGGACGGCCCTTCCCGTGTGTCGCAGTGTCCTTCGCGAATGTGCGGCTGTGCGTGAACCCGTGTGCCACACTGCGGCACCGTAAGTGTTGCCGGGTCAGTTAAGGCGGCGAGTTCGACTGTCCAACCACAAGCATCAAGCAACGCTGCTCAGCACCAATCAACCCGAACGCCACACAAGCACAGCACCAGGCGACCAGCTAGCGCTCTCCAGCAAGGGAACGGAAAAGAAGAAAACACACTTGTCCCATCAGCAAACAAAAGAGAAGAAAAAAAGAACAAAGCCACTGGGCGGAACCGGAAACACGATCCCGATCCCGAACCAAGGAGCTAACTCAACTCGACTCGCCCTACCCCGGAGGCGGCCCGGAGACCCCCAAGCGCACCATGTACTATCCGACGGCGGATCTACCGTCGCCGCAAACCTTC] [+] EMBL BM586763 [CCGCCGCGAGAGTCGTCCGCGGTCGCCCTGTCTTTTCGTTTGTTGCCCTTTGGTGCATTCGCTCACTTTCTTCGTACCGTAGTGCAAAACCGTGCGTGCATCCGTGTGTGTGTGTGTCTGTGTTTCGGTCCCTTGTTTTCCCGTGTGTGGTTCTCCCTTCCGGTGTGTGTGTTGCTCCGTACCCCCGTTTCGGCAGACCCGGACGGCCCTTCCCGTGTGTCGCAGTGTCCTTCGCGAATGTGCGGCTGTGCGTGAACCCGTGTGCCACACTGCGGCACCGTAAGTGTTGCCGGGTCAGTTAAGGCGGCGAGTTCGACTGTCCAACCACAAGCATCAAGCAACGCTGCTCAGCACCAATCAACCCGAACGCCACACAAGCACAGCACCAGGCGACCAGCTAGCGCTCTCCAGCAAGGGAACGGAAAAGAAGAAAACACACTTGTCCCATCAGCAAACAAAAGAGAAGAAAAAAAGAACAAAGCCACTGGGCGGAACCGGAAACACGATCCCGATCCCGAACCAAGGAGCTAACTCAACTCGACTCGCCCTACCCCGGAGGCGGCCCGGAGACCCCCAAGCGCACCATGTACTATCCGACGGCGGATCTACCGTCGCCGCAAACCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7836#0 ------------------------------------------------------------ consensus_7836#1 CCGCCGCGAGAGTCGTCCGCGGTCGCCCTGTCTTTTCGTTTGTTGCCCTTTGGTGCATTC 60 consensus_7836#0 -----------------------------------------------------GTGTCTG 7 consensus_7836#1 GCTCACTTTCTTCGTACCGTAGTGCAAAACCGTGCGTGCATCCGTGTGTGTGTGTGTCTG 120 ******* consensus_7836#0 TGTTTCGGTCCCTTGTTTTCCCGTGTGTGGTTCTCCCTTCCGGTGTGTGTGTGTGTGTTG 67 consensus_7836#1 TGTTTCGGTCCCTTGTTTTCCCGTGTGTGGTTCTCCCTTCCGGTGTGTG------TGTTG 174 ************************************************* ***** consensus_7836#0 CTCCGTACCCCCGTTTCGGCAGACCCGGACGGCCCTTCCCGTGTGTCGCAGTGTCCTTCG 127 consensus_7836#1 CTCCGTACCCCCGTTTCGGCAGACCCGGACGGCCCTTCCCGTGTGTCGCAGTGTCCTTCG 234 ************************************************************ consensus_7836#0 CGAATGTGCGGCTGTGCGTGAACCCGTGTGCCACACTGCGGCACCGTAAGTGTTGCCGGG 187 consensus_7836#1 CGAATGTGCGGCTGTGCGTGAACCCGTGTGCCACACTGCGGCACCGTAAGTGTTGCCGGG 294 ************************************************************ consensus_7836#0 TCAGTTAAGGCGGCGAGTTCGACTGTCCAACCACAAGCATCAAGCAACGCTGCTCAGCAC 247 consensus_7836#1 TCAGTTAAGGCGGCGAGTTCGACTGTCCAACCACAAGCATCAAGCAACGCTGCTCAGCAC 354 ************************************************************ consensus_7836#0 CAATCAACCCGAACGCCACACAAGCACAGCACCAGGCGACCAGCTAGCGCTCTCCAGCAA 307 consensus_7836#1 CAATCAACCCGAACGCCACACAAGCACAGCACCAGGCGACCAGCTAGCGCTCTCCAGCAA 414 ************************************************************ consensus_7836#0 GGGAACGGAAAAGAAGAAAACACACTTGTCCCATCAGCAAACAAAAGAGAAGAAAAAAAG 367 consensus_7836#1 GGGAACGGAAAAGAAGAAAACACACTTGTCCCATCAGCAAACAAAAGAGAAGAAAAAAAG 474 ************************************************************ consensus_7836#0 AACAAAGCCACTGGG---AAC----GTCTCTTTGCCCATCGTGCACGCGCGCGCCTTCTC 420 consensus_7836#1 AACAAAGCCACTGGGCGGAACCGGAAACACGATCCCGATCCCGAACCAAGGAGCTAACTC 534 *************** *** * * * ** *** * ** * ** *** consensus_7836#0 CTTAGCAACTGCCGGCTTCCGGAACTGGCAGGCGAACGAGTGTGGCTTGGATTAACAGTC 480 consensus_7836#1 AACTCGACTCGCCCTACCCCGGAGGCGGCCCGGAGACCCCCAAGCGCACCATGTACTATC 594 * *** ***** *** * ** * ** ** ** consensus_7836#0 CACCGGTTAGCACCCCAATGCCCCAATGGCTTCCAGGCTGCTGCAGGAGTAGTATCTCCC 540 consensus_7836#1 CGACGGCGGATCTACCGTCGCCGCAA-ACCTTC--------------------------- 626 * *** ** *** *** **** consensus_7836#0 GAGACAGCGGACATCACGCTACGATAACAACCGACCGCAACCGGGGAGAAACACGTTGCG 600 consensus_7836#1 ------------------------------------------------------------ consensus_7836#0 CACACGTTTGATGGGGTTTTTTTTTTTCTTCACACACAAGCACTTTGTTTGTTCCCAGAC 660 consensus_7836#1 ------------------------------------------------------------ consensus_7836#0 GAGATTCAGCGATGCACAAAACAAACAGGACCGCAAACGCACGAGCCGGCCACGCGCGCA 720 consensus_7836#1 ------------------------------------------------------------ consensus_7836#0 TGGGTGGCGGGGTCGGGGCTTCGCTACAAATAACAGGAGACGCCCCGTGCTCTGGTAAAT 780 consensus_7836#1 ------------------------------------------------------------ consensus_7836#0 ATGTGCCTTTGCCGCGTCTGTCGGTTGGGTTTGGGGGGGGGGCGCGTCTTCCCTTGGTCT 840 consensus_7836#1 ------------------------------------------------------------ consensus_7836#0 GATGGCAATGTAACAAATTCTGCAGCGCACAACAACCGACAACGACATCATGATGAGCGT 900 consensus_7836#1 ------------------------------------------------------------ consensus_7836#0 ATGTGTTGATAGGTGGGAATCAAGAAAATCGTTTTTTTTGCTTGTAAATTGGCATACGTT 960 consensus_7836#1 ------------------------------------------------------------ consensus_7836#0 AAGGATGAGACGCAGCGTTACGTGGTAAAGGCAAATGGTAGGAATGATTGTGTTTAAAGT 1020 consensus_7836#1 ------------------------------------------------------------ consensus_7836#0 TCAATGAATGGAATTTAGGTCGAGGTAGGCTTTTACTTCCCCTAGTATTAACTTCAAATC 1080 consensus_7836#1 ------------------------------------------------------------ consensus_7836#0 TCAATTACAACTAATCGCACAGCTCAGCAGTTGAAACATACAGATGCTGTTAAGGAAGAA 1140 consensus_7836#1 ------------------------------------------------------------ consensus_7836#0 TGCAGGATACTGAGAAGAATTATGGAGCAGGACTTTACCTTTCCCACAATTCAAAACGAT 1200 consensus_7836#1 ------------------------------------------------------------ consensus_7836#0 ATGTGGTCTCTAACTAAATGTGGTCGTCCTAAATTCCTGTACTTCTAGACTGAACAGTTC 1260 consensus_7836#1 ------------------------------------------------------------ consensus_7836#0 CCAACTTCCACCATAGAAGGGTAGTGGGATGTTGGGACTTTTTTATATGCTGCATGTGAG 1320 consensus_7836#1 ------------------------------------------------------------ consensus_7836#0 TAACCAACCCTATCCCAGAAAGCTGTGGTCTCGGAATTCGAATCCAACAGAAATTTCTCA 1380 consensus_7836#1 ------------------------------------------------------------ consensus_7836#0 CAATTTCGAGGACTCTGCGTTCGAGGAGCCACTGAATTGTGATCTTGAGATGAATCCGAA 1440 consensus_7836#1 ------------------------------------------------------------ consensus_7836#0 TAAATCCTTCAAACCACCT 1459 consensus_7836#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||