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Anopheles gambiae
cluster # 7842 cluster # 7842       Sequences # 8       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7842#0 length = 1036 sequences # 2  
consensus_7842#1 length = 918 sequences # 1  
consensus_7842#2 length = 801 sequences # 2  
consensus_7842#3 length = 687 sequences # 2  
consensus_7842#4 length = 548 sequences # 1  

consensusID : consensus_7842#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1036
fasta sequence
                              [CCGCCCACGCGTCCGGCCGTACCAAAACCCTTCAAGCACGCTCTGAGCAAAGATTGTAGCAAAGATGCCACCGACCGTGCACAAGGAGACCAATTTCTCCACCACAGACCTGAAGTGGAAGATGTCTCTGATCCAGCCATCCGGTGAGCTGAGCGCCAAGATCAAGGAGGAGCTGCGCGAGCCGGCAAACCCGGCCGACATTGAGCGCGACATTGGCATCATCCGCGAGTGGCTGAGCAAGCAGCCGCATCTGCCCAAGGACATGGACGATGCCCGCCTGCGCACCTTCCTGCGCGGCTGCAAGTTCAGCCTGGAGCGCGTCAAGCAGAAGCTGGACATGTACTACACGATGCGCAACGCCGTGCCGGAGTTCTTCACCGACCGTGACGTCAGCCGTCCGGAGATGGCCGAGGTGCTGAATGTGATCCACATGCCGCCACTACCGGGACTGACGCCGAACGGTTGCCGTGTGGTGATGCTGCGCGGTACCGACAAGGATATCGCCACCCCGAACGTGGTCGAGTCGATGAAGGCGACGCTGATGATCGGTGACATCCGTCTGGCCGAGGAGTCGGTCGGTGTGGCTGGTGATGTGTACGTGCTGGATGCGAGCGTCGCCACGCCGACGCACTTTGCCAAGTTCACGCCGGCGCTGGTGAAGAAGTTCCTGATCTGCGTGCAGGAGGCGTACCCGGTCAAGCTGAAGGAGGTGCACGTGATCAACGTGTCGCCGATCGTCGACACGATCGTCAACTTCGTCAAGCCGTTCCTGAAGGAGAAGATCCGCGAGCGCATCCACATCCACAGCAACATCGAGGACCTGTACAAGTACGTGCCGAAGGCGATGCTGCCGAGCGAGTACGGCGGTGATGCCGGCTCGTGCAAGGAGCTGAACGACGCGTGGCGCGCCAAGATGGGCGAGTACACCGCCTGGTTCAAGGAGCAGGAGGCGTCCAAGGCCAACGAGTCGCTCAGACCGGGCGCACCCAAGACGGCCGACGAGCTGTTCGGCATGGACGGAACCTTCCGACAGCTG]

[+] EMBL BM654811             [CCGCCCACGCGTCCGGCCGTACCAAAACCCTTCAAGCACGCTCTGAGCAAAGATTGTAGCAAAGATGCCACCGACCGTGCACAAGGAGACCAATTTCTCCACCACAGACCTGAAGTGGAAGATGTCTCTGATCCAGCCATCCGGTGAGCTGAGCGCCAAGATCAAGGAGGAGCTGCGCGAGCCGGCAAACCCGGCCGACATTGAGCGCGACATTGGCATCATCCGCGAGTGGCTGAGCAAGCAGCCGCATCTGCCCAAGGACATGGACGATGCCCGCCTGCGCACCTTCCTGCGCGGCTGCAAGTTCAGCCTGGAGCGCGTCAAGCAGAAGCTGGACATGTACTACACGATGCGCAACGCCGTGCCGGAGTTCTTCACCGACCGTGACGTCAGCCGTCCGGAGATGGCCGAGGTGCTGAATGTGATCCACATGCCGCCACTACCGGGACTGACGCCGAACGGTTGCCGTGTGGTGATGCTGCGCGGTACCGACAAGGATATCGCCACCCCGAACGTGGTCGAGTCGATGAAGGCGACGCTGATGATCGGTGACATCCGTCTGGCCGAGGAGTCGGTCGGTGTGGCTGGTGATGTGTACGTGCTGGATGCGAGCGTCGCCACGCCGACGCACTTTGCCAAGTTCACGCCGGCGCTGGTGAAGAAGTTCCTGATCTGCGTGCAGGAGGCGTACCCGGTC                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BX628024             [                                                                                                                                                                                                                                                                                                                                                                                                                    TGGCCGAGGTGCTGAATGTGATCCACATGCCGCCACTACCGGGACTGACGCCGAACGGTTGCCGTGTGGTGATGCTGCGCGGTACCGACAAGGATATCGCCACCCCGAACGTGGTCGAGTCGATGAAGGCGACGCTGATGATCGGTGACATCCGTCTGGCCGAGGAGTCGGTCGGTGTGGCTGGTGATGTGTACGTGCTGGATGCGAGCGTCGCCACGCCGACGCACTTTGCCAAGTTCACGCCGGCGCTGGTGAAGAAGTTCCTGATCTGCGTGCAGGAGGCGTACCCGGTCAAGCTGAAGGAGGTGCACGTGATCAACGTGTCGCCGATCGTCGACACGATCGTCAACTTCGTCAAGCCGTTCCTGAAGGAGAAGATCCGCGAGCGCATCCACATCCACAGCAACATCGAGGACCTGTACAAGTACGTGCCGAAGGCGATGCTGCCGAGCGAGTACGGCGGTGATGCCGGCTCGTGCAAGGAGCTGAACGACGCGTGGCGCGCCAAGATGGGCGAGTACACCGCCTGGTTCAAGGAGCAGGAGGCGTCCAAGGCCAACGAGTCGCTCAGACCGGGCGCACCCAAGACGGCCGACGAGCTGTTCGGCATGGACGGAACCTTCCGACAGCTG]


>consensus_7842#0 CCGCCCACGCGTCCGGCCGTACCAAAACCCTTCAAGCACGCTCTGAGCAAAGATTGTAGC AAAGATGCCACCGACCGTGCACAAGGAGACCAATTTCTCCACCACAGACCTGAAGTGGAA GATGTCTCTGATCCAGCCATCCGGTGAGCTGAGCGCCAAGATCAAGGAGGAGCTGCGCGA GCCGGCAAACCCGGCCGACATTGAGCGCGACATTGGCATCATCCGCGAGTGGCTGAGCAA GCAGCCGCATCTGCCCAAGGACATGGACGATGCCCGCCTGCGCACCTTCCTGCGCGGCTG CAAGTTCAGCCTGGAGCGCGTCAAGCAGAAGCTGGACATGTACTACACGATGCGCAACGC CGTGCCGGAGTTCTTCACCGACCGTGACGTCAGCCGTCCGGAGATGGCCGAGGTGCTGAA TGTGATCCACATGCCGCCACTACCGGGACTGACGCCGAACGGTTGCCGTGTGGTGATGCT GCGCGGTACCGACAAGGATATCGCCACCCCGAACGTGGTCGAGTCGATGAAGGCGACGCT GATGATCGGTGACATCCGTCTGGCCGAGGAGTCGGTCGGTGTGGCTGGTGATGTGTACGT GCTGGATGCGAGCGTCGCCACGCCGACGCACTTTGCCAAGTTCACGCCGGCGCTGGTGAA GAAGTTCCTGATCTGCGTGCAGGAGGCGTACCCGGTCAAGCTGAAGGAGGTGCACGTGAT CAACGTGTCGCCGATCGTCGACACGATCGTCAACTTCGTCAAGCCGTTCCTGAAGGAGAA GATCCGCGAGCGCATCCACATCCACAGCAACATCGAGGACCTGTACAAGTACGTGCCGAA GGCGATGCTGCCGAGCGAGTACGGCGGTGATGCCGGCTCGTGCAAGGAGCTGAACGACGC GTGGCGCGCCAAGATGGGCGAGTACACCGCCTGGTTCAAGGAGCAGGAGGCGTCCAAGGC CAACGAGTCGCTCAGACCGGGCGCACCCAAGACGGCCGACGAGCTGTTCGGCATGGACGG AACCTTCCGACAGCTG



consensusID : consensus_7842#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 918
fasta sequence
                              [CAGATTGCCCCGAGGTTTTTCAGTGGGTTCAGCAGTGCACACAGTGCGAGCAGAAGCAAACCAGCCAAAACCACACAGATCTCTCCCCCCCACTATACCTGCAGCAGCAGTCACCTGTACCAAAGAGTGTGAACCTGTCTGCTGTATCTGTGATTCCCAAACTCTGCTTGTATATGTATGTACCATGCCTGTACCAAAACCCTATCAATGATTGTGCTCCTGATCCATGCCATCCTGTGTGATGCTTGAAGCTGCCAATGGATCTAATGTGGATGTGATGCTTGCTGCTGATGCCTGTGCTAAACCCTGGGCCTGACCATATGATGCTGCTGACCATATTGGCATACTATCCCTGCCTGATGGTTGTGNCCTTGATGGGCCAAAACGNTCAATGCCCCTGGGCGTGAATTACCTTGGGACACCACCTAAATTGTGGGGCAGCGAATATGTGGCNAACCCTGGAAAATTTGGACCGNCCCCTTGGACCACCGTTTGGTACTTGGTCCAACCCCTACTTACCCCCTCTGGCNCTTGAGCCCTGGTGGCCTTATGGCGCACAAACGGCTTACACCCCAAAATGGACGAGCCCCATTTTGGGNGCAANTAATGTGACGCCAGTGGTCCCCCGGGGAGCNCATTTNCCCGACAGAAACAATGTTGCCNCCATAATGTTGCGTANATAACAACGGGTGCGCCCCCTTTNGGTGGTGTCGAAAGCCACGCCAAACACATTTTTGTGTGGAATTTAANAACCCGCNACTTTAAANACCCTAAAAGACNCCAGGGTGGAAAAACAATAATGTGGCAGCCCAGTGAGNCTGCCCCTANCAACNAACACCTGTATGTGTACCCCCCCACTNGTGNGACTGGGTGTCGACCACCCCCNCGGCAGCTGAGGANAGAATCNGTACAGCATAT]

[+] EMBL AL931749             [CAGATTGCCCCGAGGTTTTTCAGTGGGTTCAGCAGTGCACACAGTGCGAGCAGAAGCAAACCAGCCAAAACCACACAGATCTCTCCCCCCCACTATACCTGCAGCAGCAGTCACCTGTACCAAAGAGTGTGAACCTGTCTGCTGTATCTGTGATTCCCAAACTCTGCTTGTATATGTATGTACCATGCCTGTACCAAAACCCTATCAATGATTGTGCTCCTGATCCATGCCATCCTGTGTGATGCTTGAAGCTGCCAATGGATCTAATGTGGATGTGATGCTTGCTGCTGATGCCTGTGCTAAACCCTGGGCCTGACCATATGATGCTGCTGACCATATTGGCATACTATCCCTGCCTGATGGTTGTGNCCTTGATGGGCCAAAACGNTCAATGCCCCTGGGCGTGAATTACCTTGGGACACCACCTAAATTGTGGGGCAGCGAATATGTGGCNAACCCTGGAAAATTTGGACCGNCCCCTTGGACCACCGTTTGGTACTTGGTCCAACCCCTACTTACCCCCTCTGGCNCTTGAGCCCTGGTGGCCTTATGGCGCACAAACGGCTTACACCCCAAAATGGACGAGCCCCATTTTGGGNGCAANTAATGTGACGCCAGTGGTCCCCCGGGGAGCNCATTTNCCCGACAGAAACAATGTTGCCNCCATAATGTTGCGTANATAACAACGGGTGCGCCCCCTTTNGGTGGTGTCGAAAGCCACGCCAAACACATTTTTGTGTGGAATTTAANAACCCGCNACTTTAAANACCCTAAAAGACNCCAGGGTGGAAAAACAATAATGTGGCAGCCCAGTGAGNCTGCCCCTANCAACNAACACCTGTATGTGTACCCCCCCACTNGTGNGACTGGGTGTCGACCACCCCCNCGGCAGCTGAGGANAGAATCNGTACAGCATAT]


>consensus_7842#1 CAGATTGCCCCGAGGTTTTTCAGTGGGTTCAGCAGTGCACACAGTGCGAGCAGAAGCAAA CCAGCCAAAACCACACAGATCTCTCCCCCCCACTATACCTGCAGCAGCAGTCACCTGTAC CAAAGAGTGTGAACCTGTCTGCTGTATCTGTGATTCCCAAACTCTGCTTGTATATGTATG TACCATGCCTGTACCAAAACCCTATCAATGATTGTGCTCCTGATCCATGCCATCCTGTGT GATGCTTGAAGCTGCCAATGGATCTAATGTGGATGTGATGCTTGCTGCTGATGCCTGTGC TAAACCCTGGGCCTGACCATATGATGCTGCTGACCATATTGGCATACTATCCCTGCCTGA TGGTTGTGNCCTTGATGGGCCAAAACGNTCAATGCCCCTGGGCGTGAATTACCTTGGGAC ACCACCTAAATTGTGGGGCAGCGAATATGTGGCNAACCCTGGAAAATTTGGACCGNCCCC TTGGACCACCGTTTGGTACTTGGTCCAACCCCTACTTACCCCCTCTGGCNCTTGAGCCCT GGTGGCCTTATGGCGCACAAACGGCTTACACCCCAAAATGGACGAGCCCCATTTTGGGNG CAANTAATGTGACGCCAGTGGTCCCCCGGGGAGCNCATTTNCCCGACAGAAACAATGTTG CCNCCATAATGTTGCGTANATAACAACGGGTGCGCCCCCTTTNGGTGGTGTCGAAAGCCA CGCCAAACACATTTTTGTGTGGAATTTAANAACCCGCNACTTTAAANACCCTAAAAGACN CCAGGGTGGAAAAACAATAATGTGGCAGCCCAGTGAGNCTGCCCCTANCAACNAACACCT GTATGTGTACCCCCCCACTNGTGNGACTGGGTGTCGACCACCCCCNCGGCAGCTGAGGAN AGAATCNGTACAGCATAT



consensusID : consensus_7842#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 801
fasta sequence
                              [CAAGAATCGGCCACGAGGTCGGTTCCAGCGG-TTCAGCAGTGCACACAGTGCGAGCAGAAGCAAACCAGCCCAAAACCACACAGATCTCTCCCCCCCACTTCCTGCAGCAGCAGTCACCGTACCAAAGAGTGTGAACCGTCGTGTTCGTGATTCCCATCTCGTTGTTAGTAGTACCAGCCGTACCAAAACCCTTCAAGATGTCTCTGATCCAGCCATCTGGTGAGCTGAGCGCCAAGATCAAGGAGGAGCTGCGCGAGCCGGCAAACCCGGCCGACATTGAGCGCGACATTGGCATCATCCGCGAGTGGCTGAGCAAGCAGCCGCATCTGCCCAAGGACATGGACGATGCCCGCCTGCGCACCTTCCTGCGCGGCTGCAAGTTCAGCCTGGAGCGCGTCAAGCAGAAGCTGGACATGTACTACACGATGCGCAACGCCGTGCCGGAGTTCTTCACCGACCGTGACGTCAAGCCGTCCGGAGATGGCCGAGGTGCTGAATGTGATCCACATGCCGCCACTACCGGGACTGACGCCGAACGGTTGCCGTGTGGTGATGCTGCGCGGTACCGACAAGGATATCGCCGAGCCCGGAACGTGGTCGAGTCGGATGAAAGGCGAACCGCTGAATGAATTCCGGGTGAACCAATTCCGGTTCTGGGGCCNNAAGGAAGTTCCGGGTCGGGTGTTGGCCTAGGTGAATGGTGTTACCGTGCCTTGGGGATTGCAGAAGCCGTNTTGNCNCAAGGCCGAACGCGCAACTTTTGGCCAAGGTTTCACNGGAGCCCGGGCAGCGCCTTGTNCA]

[+] EMBL BX467359             [CAAGAATCGGCCACGAGGTCGGTTCCAGCGG TTCAGCAGTGCACACAGTGCGAGCAGAAGCAAACCAGCCCAAAACCACACAGATCTCTCCCCCCCACTTCCTGCAGCAGCAGTCACCGTACCAAAGAGTGTGAACCGTCGTGTTCGTGATTCCCATCTCGTTGTTAGTAGTACCAGCCGTACCAAAACCCTTCAAGATGTCTCTGATCCAGCCATCTGGTGAGCTGAGCGCCAAGATCAAGGAGGAGCTGCGCGAGCCGGCAAACCCGGCCGACATTGAGCGCGACATTGGCATCATCCGCGAGTGGCTGAGCAAGCAGCCGCATCTGCCCAAGGACATGGACGATGCCCGCCTGCGCACCTTCCTGCGCGGCTGCAAGTTCAGCCTGGAGCGCGTCAAGCAGAAGCTGGACATGTACTACACGATGCGCAACGCCGTGCCGGAGTTCTTCACCGACCGTGACGTCAAGCCGTCCGGAGATGGCCGAGGTGCTGAATGTGATCCACATGCCGCCACTACCGGGACTGACGCCGAACGGTTGCCGTGTGGTGATGCTGCGCGGTACCGACAAGGATATCGCCGAGCCCGGAACGTGGTCGAGTCGGATGAAAGGCGAACCGCTGAATGAATTCCGGGTGAACCAATTCCGGTTCTGGGGCCNNAAGGAAGTTCCGGGTCGGGTGTTGGCCTAGGTGAATGGTGTTACCGTGCCTTGGGGATTGCAGAAGCCGTNTTGNCNCAAGGCCGAACGCGCAACTTTTGGCCAAGGTTTCACNGGAGCCCGGGCAGCGCCTTGTNCA]
[+] EMBL BX619523             [                     acgaggGCGGTTTNAGCAGTGCACACAGTGCGAGCAGAAGCAAACCAGCCCAAAACCACACAGATCTCTCCCCCCCACTTCCTGCAGCAGCAGTCACCGTACCAAAGAGTGTGAACCGTCGTGTTCGTGATTCCCATCTCGTTGTTAGTAGTACCAGCCGTACCAAAACCCTTCAAGATGTCTCTGATCCAGCCATCCGGTGAGCTGAGCGCCAAGATCAAGGAGGAGCTGCGCGAGCCGGCAAACCCGGCCGACATTGAGCGCGACATTGGCATCATCCGCGAGTGGCTGAGCAAGCAGCCGCATCTGCCCAAGGACATGGACGATGCCCGCCTGCGCACCTTCCTGCGCGGCTGCAAGTTCAGCCTGGAGCGCGTCAAGCAGAAGCTGGACATGTACTACACGATGCGCAACGCCGTGCCGGAGTTCTTCACCGACCGTGACGTC AGCCGTCCGGAGATGGCCGAGGTGCTGAATGTGATCCACATGCCGCCACTACCGGGACTGACGCCGAACGGTTGCCGTGTGGTGATGCTGCGCGGTACCGACAANGATATCGCC A CCCCGAACGTGGTCGAGTC GATG AAGGCGA  CGCTG ATGA  TC  GGTGA  CA  TCCG  TCT  GGCC  GAGG AGT  C NGTC GGTG TGGC                                                                                                                ]


>consensus_7842#2 CAAGAATCGGCCACGAGGTCGGTTCCAGCGGTTCAGCAGTGCACACAGTGCGAGCAGAAG CAAACCAGCCCAAAACCACACAGATCTCTCCCCCCCACTTCCTGCAGCAGCAGTCACCGT ACCAAAGAGTGTGAACCGTCGTGTTCGTGATTCCCATCTCGTTGTTAGTAGTACCAGCCG TACCAAAACCCTTCAAGATGTCTCTGATCCAGCCATCTGGTGAGCTGAGCGCCAAGATCA AGGAGGAGCTGCGCGAGCCGGCAAACCCGGCCGACATTGAGCGCGACATTGGCATCATCC GCGAGTGGCTGAGCAAGCAGCCGCATCTGCCCAAGGACATGGACGATGCCCGCCTGCGCA CCTTCCTGCGCGGCTGCAAGTTCAGCCTGGAGCGCGTCAAGCAGAAGCTGGACATGTACT ACACGATGCGCAACGCCGTGCCGGAGTTCTTCACCGACCGTGACGTCAAGCCGTCCGGAG ATGGCCGAGGTGCTGAATGTGATCCACATGCCGCCACTACCGGGACTGACGCCGAACGGT TGCCGTGTGGTGATGCTGCGCGGTACCGACAAGGATATCGCCGAGCCCGGAACGTGGTCG AGTCGGATGAAAGGCGAACCGCTGAATGAATTCCGGGTGAACCAATTCCGGTTCTGGGGC CNNAAGGAAGTTCCGGGTCGGGTGTTGGCCTAGGTGAATGGTGTTACCGTGCCTTGGGGA TTGCAGAAGCCGTNTTGNCNCAAGGCCGAACGCGCAACTTTTGGCCAAGGTTTCACNGGA GCCCGGGCAGCGCCTTGTNCA



consensusID : consensus_7842#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 687
fasta sequence
                              [CAGTGCACACAGTGCGAGCAGAAGCAAACCAGCCCAAAACCACACAGATCTCTCCCCCCCACTTCCTGCAGCAGCAGTCACCGTACCAAAGAGTGTGAACCGTCGTGTTCGTGATTCCCATCTCGTTGTTAGTAGTACCAGCCGTACCAAAACCCTTCAAGCACGCTCTGAGCAAAGATTGTAGCAAAGATGCCACCGACCGTGCACAAGGAGACCAATTTCTCCACCACAGACCTGAAGTGGAAGATGTCTCTG-ATCCAGCCATCCGGTGAGCTGAGCGCCAAGATCAAGGAGGAGCTGCGCGAGCCGGCAAACCCGGCCGACATTGAGCGCGACATTGGCATCATCCGCGAGTGGCTGAGCAAGCAGCCGCATCTGCCCAAGGACATGGACGATGCCCGCCTGCGCACCTTCCTGCGCGGCTGCAAGTTCAGCCTGGAGCGCGTCAAGCAGAAGCTGGACATGTACTACACGATGCGCAACGCCGTGCCGGAGTTCTTCACC--GACCG-TG-ACG-TC---AGCCG-TCCGGAGAT-GGCCGAGGTGCTG-AATGTGATCCACATGCCGCCACTACCGGGACTGAC-CCCGAACGG--TTGCCG-TGTGGTGATGCTGCGC-GGTACCGACAAG-GACATCGCCACCCCG-AAC-GTGGTCGAGTCGATTAAGGGGAACGCGNATTATCGGNGNGACATCCGG]

[+] EMBL BM649099             [CAGTGCACACAGTGCGAGCAGAAGCAAACCAGCCCAAAACCACACAGATCTCTCCCCCCCACTTCCTGCAGCAGCAGTCACCGTACCAAAGAGTGTGAACCGTCGTGTTCGTGATTCCCATCTCGTTGTTAGTAGTACCAGCCGTACCAAAACCCTTCAAGCACGCTCTGAGCAAAGATTGTAGCAAAGATGCCACCGACCGTGCACAAGGAGACCAATTTCTCCACCACAGACCTGAAGTGGAAGATGTCTCTG ATCCAGCCATCCGGTGAGCTGAGCGCCAAGATCAAGGAGGAGCTGCGCGAGCCGGCAAACCCGGCCGACATTGAGCGCGACATTGGCATCATCCGCGAGTGGCTGAGCAAGCAGCCGCATCTGCCCAAGGACATGGACGATGCCCGCCTGCGCACCTTCCTGCGCGGCTGCAAGTTCAGCCTGGAGCGCGTCAAGCAGAAGCTGGACATGTACTACACGATGCGCAACGCCGTGCCGGAGTTCTTCACC  GACCG TG ACG TC   AGCCG TCCGGAGAT GGCCGAGGTGCTG AATGTGATCCACATGCCGCCACTACCGGGACTGAC CCCGAACGG  TTGCCG TGTGGTGATGCTGCGC GGTACCGACAAG GACATCGCCACCCCG AAC GTGGTCGAGTCGA                                   ]
[+] EMBL AL933582             [         CAGTGCNAGCAGAAGCAAACCAGGCCAAAACCACACAGATTTCTCCCCCCCACTTCCTGCAGCAGCAGTCACCGTACCAAAGAGTGTGAACCGTCGTGTTCGTGATTCCCATCTCGTTGTTAGTAGTACCAGCCGTACCAAAACCCTTCAAGCACGCTCTGAGCAAAGATTGTAGCAAAGATGCCACCGACCGTGCACAAGGAGACCAATTTCTCCACCACAGACCTGAAGTGGAAGATGTCTCTGTATCCAGCCATCCGGTGAGCTGAGCGCCAAGATCAAGGAGGAGCTGCGCGAGCCGGCAAACCCGG CGACATTGAGCGCGACATTGGCATCATCCGCGAGTGGCTGAGCAAGCAGCCGCATCTGGCCAAGGACATGGACGATGCCCGCCTGCGCA CTTCCTGCGCGG TGANAGTTCAGCCTGGAGCGCGTCAAGCAGAAGCTGGACATGTACTACACGATGCGCAACGCCGTGCCGGAGTTCTTCACCCGGACCGTTGAACGNTCCNGNGCGGNACCGGAGATGGGCGGAGGTGCTGAAATGTGATCCACATGCCGGCACTACGGGAACTGACGCCCGAACGGGTTTGCCGCTGTNGTGATTCTGCGCGGGTACCGACAAGNGATNTGGCAACCCCGAAACGGTGGTCGAGTCGATTAAGGGGAACGCGNATTATCGGNGNGACATCCGG]


>consensus_7842#3 CAGTGCACACAGTGCGAGCAGAAGCAAACCAGCCCAAAACCACACAGATCTCTCCCCCCC ACTTCCTGCAGCAGCAGTCACCGTACCAAAGAGTGTGAACCGTCGTGTTCGTGATTCCCA TCTCGTTGTTAGTAGTACCAGCCGTACCAAAACCCTTCAAGCACGCTCTGAGCAAAGATT GTAGCAAAGATGCCACCGACCGTGCACAAGGAGACCAATTTCTCCACCACAGACCTGAAG TGGAAGATGTCTCTGATCCAGCCATCCGGTGAGCTGAGCGCCAAGATCAAGGAGGAGCTG CGCGAGCCGGCAAACCCGGCCGACATTGAGCGCGACATTGGCATCATCCGCGAGTGGCTG AGCAAGCAGCCGCATCTGCCCAAGGACATGGACGATGCCCGCCTGCGCACCTTCCTGCGC GGCTGCAAGTTCAGCCTGGAGCGCGTCAAGCAGAAGCTGGACATGTACTACACGATGCGC AACGCCGTGCCGGAGTTCTTCACCGACCGTGACGTCAGCCGTCCGGAGATGGCCGAGGTG CTGAATGTGATCCACATGCCGCCACTACCGGGACTGACCCCGAACGGTTGCCGTGTGGTG ATGCTGCGCGGTACCGACAAGGACATCGCCACCCCGAACGTGGTCGAGTCGATTAAGGGG AACGCGNATTATCGGNGNGACATCCGG



consensusID : consensus_7842#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 548
fasta sequence
                              [CGAGGGTAANCTGATGATCGGTGACATCCGTCTGGCCGAGGAGTCGGTCGGTGTGGCTGGTGATGTGTACGTGCTGGATGCGAGCGTCGCCACGCCGACGCACTTTGCCAAGTTCACGCCGGCGCTGGTGAAGAAGTTCCTGATCTGCGTGCAGGAGGCGTACCCGGTCAAGCTGAAGGAGGTGCACGTGATCAACGTGTCGCCGATCGTCGACACGATCGTCAACTTCGTCAAGCCGTTCCTGAAGGAGAAGATCCGCGAGCGCATCCACATCCACAGCAACATCGAGGACCTGTACAAGTACGTGCCGAAGGCGATGCTGCCGAGCGAGTACGGCGGTGATGCCGGCTCGTGCAAGGAGCTGAACGACGCGTGGCGCGCCAAGATGGGCGAGTACACCGCCTGGTTCAAGGAGCAGGAGGCGTCCAAGGCCAACGAGTCGCTCAGACCGGGCGCACCCAAGACGGCGACGAGCTGTTCGGCATGGACGGAACCTTCCGACAGCTGTTCGGCATGGACGGAACCTTCCGACAGTGACCATCGATTAA]

[+] EMBL AL693491             [CGAGGGTAANCTGATGATCGGTGACATCCGTCTGGCCGAGGAGTCGGTCGGTGTGGCTGGTGATGTGTACGTGCTGGATGCGAGCGTCGCCACGCCGACGCACTTTGCCAAGTTCACGCCGGCGCTGGTGAAGAAGTTCCTGATCTGCGTGCAGGAGGCGTACCCGGTCAAGCTGAAGGAGGTGCACGTGATCAACGTGTCGCCGATCGTCGACACGATCGTCAACTTCGTCAAGCCGTTCCTGAAGGAGAAGATCCGCGAGCGCATCCACATCCACAGCAACATCGAGGACCTGTACAAGTACGTGCCGAAGGCGATGCTGCCGAGCGAGTACGGCGGTGATGCCGGCTCGTGCAAGGAGCTGAACGACGCGTGGCGCGCCAAGATGGGCGAGTACACCGCCTGGTTCAAGGAGCAGGAGGCGTCCAAGGCCAACGAGTCGCTCAGACCGGGCGCACCCAAGACGGCGACGAGCTGTTCGGCATGGACGGAACCTTCCGACAGCTGTTCGGCATGGACGGAACCTTCCGACAGTGACCATCGATTAA]


>consensus_7842#4 CGAGGGTAANCTGATGATCGGTGACATCCGTCTGGCCGAGGAGTCGGTCGGTGTGGCTGG TGATGTGTACGTGCTGGATGCGAGCGTCGCCACGCCGACGCACTTTGCCAAGTTCACGCC GGCGCTGGTGAAGAAGTTCCTGATCTGCGTGCAGGAGGCGTACCCGGTCAAGCTGAAGGA GGTGCACGTGATCAACGTGTCGCCGATCGTCGACACGATCGTCAACTTCGTCAAGCCGTT CCTGAAGGAGAAGATCCGCGAGCGCATCCACATCCACAGCAACATCGAGGACCTGTACAA GTACGTGCCGAAGGCGATGCTGCCGAGCGAGTACGGCGGTGATGCCGGCTCGTGCAAGGA GCTGAACGACGCGTGGCGCGCCAAGATGGGCGAGTACACCGCCTGGTTCAAGGAGCAGGA GGCGTCCAAGGCCAACGAGTCGCTCAGACCGGGCGCACCCAAGACGGCGACGAGCTGTTC GGCATGGACGGAACCTTCCGACAGCTGTTCGGCATGGACGGAACCTTCCGACAGTGACCA TCGATTAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7842#2      ------------------------------------------------------------
consensus_7842#3      ------------------------------------------------------------
consensus_7842#0      CCGCCCACGCGTCCGGCCGTACCAAAACCCTTCAAGCACGCTCTGAGCAAAGATTGTAGC 60
consensus_7842#4      ------------------------------------------------------------
consensus_7842#1      ------------------------------------------------------------
                                                                                  

consensus_7842#2      ------------------------------------------------------------
consensus_7842#3      ------------------------------------------------------------
consensus_7842#0      AAAGATGCCACCGACCGTGCACAAGGAGACCAATTTCTCCACCACAGACCTGAAGTGGAA 120
consensus_7842#4      ------------------------------------------------------------
consensus_7842#1      ------------------------------------------------------------
                                                                                  

consensus_7842#2      ------------------------------------------------------------
consensus_7842#3      ------------------------------------------------------------
consensus_7842#0      GATGTCTCTGATCCAGCCATCCGGTGAGCTGAGCGCCAAGATCAAGGAGGAGCTGCGCGA 180
consensus_7842#4      ------------------------------------------------------------
consensus_7842#1      ------------------------------------------------------------
                                                                                  

consensus_7842#2      ------------------------------------------------------------
consensus_7842#3      ------------------------------------------------------------
consensus_7842#0      GCCGGCAAACCCGGCCGACATTGAGCGCGACATTGGCATCATCCGCGAGTGGCTGAGCAA 240
consensus_7842#4      ------------------------------------------------------------
consensus_7842#1      ------------------------------------------------------------
                                                                                  

consensus_7842#2      ------------------------------------------------------------
consensus_7842#3      ------------------------------------------------------------
consensus_7842#0      GCAGCCGCATCTGCCCAAGGACATGGACGATGCCCGCCTGCGCACCTTCCTGCGCGGCTG 300
consensus_7842#4      ------------------------------------------------------------
consensus_7842#1      ------------------------------------------------------------
                                                                                  

consensus_7842#2      ------------------------------------------------------------
consensus_7842#3      ------------------------------------------------------------
consensus_7842#0      CAAGTTCAGCCTGGAGCGCGTCAAGCAGAAGCTGGACATGTACTACACGATGCGCAACGC 360
consensus_7842#4      ------------------------------------------------------------
consensus_7842#1      ------------------------------------------------------------
                                                                                  

consensus_7842#2      ------------------------------------------------------------
consensus_7842#3      ------------------------------------------------------------
consensus_7842#0      CGTGCCGGAGTTCTTCACCGACCGTGACGTCAGCCGTCCGGAGATGGCCGAGGTGCTGAA 420
consensus_7842#4      ------------------------------------------------------------
consensus_7842#1      ------------------------------------------------------------
                                                                                  

consensus_7842#2      -------------------------------------------CAAGAATCGGCCACGAG 17
consensus_7842#3      ------------------------------------------------------------
consensus_7842#0      TGTGATCCACATGCCGCCACTACCGGGACTGACGCCGAACGGTTGCCGTGTGGTGATGCT 480
consensus_7842#4      ------------------------------------------------------------
consensus_7842#1      ----------------------------------------------CAGATTGCCCCGAG 14
                                                                                  

consensus_7842#2      GTCGGTTCCAGCGGTTCAGCAGTGCACACAGTGCGAGCAGAAGCAAACCAGCCCAAAACC 77
consensus_7842#3      -------------------CAGTGCACACAGTGCGAGCAGAAGCAAACCAGCCCAAAACC 41
consensus_7842#0      GCGCGGTACCGACAAGGATATCGCCACCCCGAACGTGGTCGAGTCGATGAAGGCGACGCT 540
consensus_7842#4      -----------------------------------------------CGAGGGTAAN-CT 12
consensus_7842#1      GTTT-TTCAGTGGGTTCAGCAGTGCACACAGTGCGAGCAGAAGCAAACCAGC-CAAAACC 72
                                                                       *     *  * 

consensus_7842#2      ACACAGATCTCTCCCCCCCACTT--CCTGCAGCAGCAGTCACC-GTACCAAAGAGTGTGA 134
consensus_7842#3      ACACAGATCTCTCCCCCCCACTT--CCTGCAGCAGCAGTCACC-GTACCAAAGAGTGTGA 98
consensus_7842#0      G-ATGATCGGTGACATCCGTCTG--GCCGAGGAGTCGGTCGGT-GTGGCTGGTGATGTGT 596
consensus_7842#4      G-ATGATCGGTGACATCCGTCTG--GCCGAGGAGTCGGTCGGT-GTGGCTGGTGATGTGT 68
consensus_7842#1      ACACAGATCTCTCCCCCCCACTATACCTGCAGCAGCAGTCACCTGTACCAAAGAGTGTGA 132
                        *          *  **  **    * *  *   * ***    **  *      **** 

consensus_7842#2      AC-CGTC----GTGTTCGTGATTC-CCATCTCG--TTGTTAGTA---GTACCAG--CCGT 181
consensus_7842#3      AC-CGTC----GTGTTCGTGATTC-CCATCTCG--TTGTTAGTA---GTACCAG--CCGT 145
consensus_7842#0      ACGTGCT----GGATGCGAGCGTCGCCACGCCG--ACGCACTTT---GCCAAGT--TCAC 645
consensus_7842#4      ACGTGCT----GGATGCGAGCGTCGCCACGCCG--ACGCACTTT---GCCAAGT--TCAC 117
consensus_7842#1      ACCTGTCTGCTGTATCTGTGATTCCCAAACTCTGCTTGTATATGTATGTACCATGCCTGT 192
                      **  *      *  *  * *  ** * *   *     *    *    *            

consensus_7842#2      ACCAAAACCCTTCAAG-------------------------------------------- 197
consensus_7842#3      ACCAAAACCCTTCAAGCACGCTCTGAGCAAAGATTGTAGCAAAGATGCCACCGACCGTGC 205
consensus_7842#0      GCCGGCGCTGGTGAAG-------------------------------------------- 661
consensus_7842#4      GCCGGCGCTGGTGAAG-------------------------------------------- 133
consensus_7842#1      ACCAAAACCCTATCAATGA---TTGTGCTCCTGATCCATGCCATCCTGTGTGATGCTTGA 249
                       **    *      *                                             

consensus_7842#2      -----------------------------------------ATGTCTCTGATCCAGCC-- 214
consensus_7842#3      ACAAGGAGACCAATTTCTCCACCACAGACCTGAAGTGGAAGATGTCTCTGATCCAGCC-- 263
consensus_7842#0      -----------------------------------------AAGTTCCTGATCTGCGT-- 678
consensus_7842#4      -----------------------------------------AAGTTCCTGATCTGCGT-- 150
consensus_7842#1      AGCTGCCAATGGATCTAATGTGGATGTGATGCTTGCTGCTGATGCCTGTGCTAAACCCTG 309
                                                               * *    ** *        

consensus_7842#2      -ATCTGGTGAGCTGA--GCGCCAAGATCAAGGAGGAGCTGCGCGAGCCGGCAAACCCGGC 271
consensus_7842#3      -ATCCGGTGAGCTGA--GCGCCAAGATCAAGGAGGAGCTGCGCGAGCCGGCAAACCCGGC 320
consensus_7842#0      -GCAGGAGGCGTACC--CGGTCAAGCTGAAGGAGGTGC-ACGTGA-TCAACGTGTC--GC 731
consensus_7842#4      -GCAGGAGGCGTACC--CGGTCAAGCTGAAGGAGGTGC-ACGTGA-TCAACGTGTC--GC 203
consensus_7842#1      GGCCTGACCATATGATGCTGCTGACCATATTGGCATACTATCCCTGCCTGATGGTTGTGN 369
                           *             *   *    *  *     *         *          * 

consensus_7842#2      CGACATTGAGCGCGA-CATTGGCATCATCCGCGAGTGGCTGAGCAAGCAGCCGCATCTGC 330
consensus_7842#3      CGACATTGAGCGCGA-CATTGGCATCATCCGCGAGTGGCTGAGCAAGCAGCCGCATCTGC 379
consensus_7842#0      CGATCGTCGACACGATCGTCAACTTCGTCAAGCCGTTCCTGAAGGAGAAGATCCGCGAGC 791
consensus_7842#4      CGATCGTCGACACGATCGTCAACTTCGTCAAGCCGTTCCTGAAGGAGAAGATCCGCGAGC 263
consensus_7842#1      CCTTGATGGGCCAAAACGNTCAATGCCCCTGGGCGTGAATTACCTTGGGACACCACCTAA 429
                      *     *   *   * *        *  *     **   * *    *      *      

consensus_7842#2      CCAAGGACATGGACGATGCCCGCCTGCGCACCTTCCTGCGCGGCTGCAAGTTCAGCCTG- 389
consensus_7842#3      CCAAGGACATGGACGATGCCCGCCTGCGCACCTTCCTGCGCGGCTGCAAGTTCAGCCTG- 438
consensus_7842#0      GCATCCACATCCACAGCAACATCGAGGACCTGTACAAGTACGTGCCGAAGGCGATGCTGC 851
consensus_7842#4      GCATCCACATCCACAGCAACATCGAGGACCTGTACAAGTACGTGCCGAAGGCGATGCTGC 323
consensus_7842#1      ATTGTGGGGCAGCGAATATGTGGCNAACCCTGGAAAATTTGGACCGNCCCCTTGGACCAC 489
                                                  *            *              *   

consensus_7842#2      -GAGCG-CGTCAAGCAGAAGCTGGACATGTACTACACGATGCGCAACGCCGTGCCGGAGT 447
consensus_7842#3      -GAGCG-CGTCAAGCAGAAGCTGGACATGTACTACACGATGCGCAACGCCGTGCCGGAGT 496
consensus_7842#0      CGAGCG-AGTACGGCGGTGAT--GCCGGCTCGTGCAAGGAGCTGAACGACGCGTGGCGCG 908
consensus_7842#4      CGAGCG-AGTACGGCGGTGAT--GCCGGCTCGTGCAAGGAGCTGAACGACGCGTGGCGCG 380
consensus_7842#1      CGTTTGGTACTTGGTCCAACCCCTACTTACCCCCTCTGGCNCTTGA-GCCCTGGTGGCCT 548
                       *   *       *           *           *   *   * * *  *  *    

consensus_7842#2      TCTTCACCGACCGTGACGTCAAGCCGTCCGGAGATGGCCGAGGTGCTGAATGTGATCCAC 507
consensus_7842#3      TCTTCACCGACCGTGACGTCA-GCCGTCCGGAGATGGCCGAGGTGCTGAATGTGATCCAC 555
consensus_7842#0      CCAAGATGGGCGAGTACACCGCCTGGTTCAAGGA-GCAGGAGGCGTCCAA---GGCCAAC 964
consensus_7842#4      CCAAGATGGGCGAGTACACCGCCTGGTTCAAGGA-GCAGGAGGCGTCCAA---GGCCAAC 436
consensus_7842#1      TATGGCGCACAAACGGCTTACACCCCAAAATGGACGAGCCCCATTTTGGGNGCAANTAAT 608
                                      *               ** *                      * 

consensus_7842#2      ATGCCGCCACTA-----CCGGGA--CTGAC--GCCGAACGGTTGCCGTGTGGTGATGCTG 558
consensus_7842#3      ATGCCGCCACTA-----CCGGGA--CTGAC--CCCGAACGGTTGCCGTGTGGTGATGCTG 606
consensus_7842#0      GAGTCGCTCAGA-----CCGGG---CGCAC--CCAAGACGGCCGACGAG--------CTG 1006
consensus_7842#4      GAGTCGCTCAGA-----CCGGG---CGCAC--CCAAGACGGC-GACGAG--------CTG 477
consensus_7842#1      GTGACGCCAGTGGTCCCCCGGGGAGCNCATTTNCCCGACAGAAACAATGT--TGCCNCCA 666
                        * ***          *****   *  *    *   ** *       *        *  

consensus_7842#2      CGCGGTACCGACAAGGATATC-GCCGAGCCCGGAACGTGGTCGAGTCGGATGAAAGGCGA 617
consensus_7842#3      CGCGGTACCGACAAGGACATC-GCCA--CCCCGAACGTGGTCGAGTCGATT--AAGGGGA 661
consensus_7842#0      TTCGGCATGGACGGAACCTTCCGACAGCTG------------------------------ 1036
consensus_7842#4      TTCGGCATGGACGGAACCTTCCGACAGCTGTTCGGCATGGACGGAACCTTCCGACAGTGA 537
consensus_7842#1      TAATGTTGCGTANATAACAACGGGTGCGCCCCCTTTN-GGTGGTGTCGAAAGCCACGCCA 725
                          *    *          * *                                     

consensus_7842#2      ACCGCTGAATGAATTCCGGGTGAACCAATTCCGGTTCTGGGGCCNNAAGGAAGTTCCGGG 677
consensus_7842#3      AC------GCGNATTATCGGNGNGACA--TCCGG-------------------------- 687
consensus_7842#0      ------------------------------------------------------------
consensus_7842#4      CC------ATCGATTAA------------------------------------------- 548
consensus_7842#1      AACACATTTTTGTGTGGAATTTAANAACCCGCNACTTTAAANACCCTAAAAGACNCCAGG 785
                                                                                  

consensus_7842#2      TCGGGTGTTGGCCTAGGTGAATGGT--GTTACCGTGCCTTGGGGATTGCAGAAGCCGTNT 735
consensus_7842#3      ------------------------------------------------------------
consensus_7842#0      ------------------------------------------------------------
consensus_7842#4      ------------------------------------------------------------
consensus_7842#1      GTGGAAAAACAATAATGTGGCAGCCCAGTGAGNCTGCCCCTANCAACN-AACACCTGTAT 844
                                                                                  

consensus_7842#2      TGNCNCAAGGCCGAACGCGCAACTTTTGGCCAA--GGTTTCACNGGAGCCCGGGCAGCGC 793
consensus_7842#3      ------------------------------------------------------------
consensus_7842#0      ------------------------------------------------------------
consensus_7842#4      ------------------------------------------------------------
consensus_7842#1      GTGTACCCCCCCACTNGTGNGACTGGGTGTCGACCACCCCCNCGGCAGCTGAGGANAGAA 904
                                                                                  

consensus_7842#2      CTTGTNCA------ 801
consensus_7842#3      --------------
consensus_7842#0      --------------
consensus_7842#4      --------------
consensus_7842#1      TCNGTACAGCATAT 918
                                    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)