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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7843#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 715 fasta sequence
[CCGCCCACGCGTCCGCCAGGTTCGACGTAACGTTAGCGATCTGCGCATAGCCGCCCACCACCGGGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACATCCCCCAACTAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAACACACAAGAGAAAGTGCATAGTGCATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGATCACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTATGCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGACTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTCAAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGCGTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAAGATGATGCGGCCACGAAAATCCAGGCCGGATTCCGC-GGGTACCGAGTGCGCAAGCAGATGCGCGGACAGAGCAGT----GGCAAGGGTGCCGTCATCGCTTCGGGCGGAATGGTG-CCCGGTGCAGGCGCTGGCTCTGGTTCGGGCACTTCATCGTCCGGCACGGTGGGAGGACAAATCGGCCA]
[+] EMBL BM653913 [CCGCCCACGCGTCCGCCAGGTTCGACGTAACGTTAGCGATCTGCGCATAGCCGCCCACCACCGGGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACATCCCCCAACTAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAACACACAAGAGAAAGTGCATAGTGCATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGATCACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTATGCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGACTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTCAAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGCGTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAAGATGATGCGGCCACGAAAATCCAGGCCGGATTCCGC GGGTACCGAGTGCGCAAGCAGATGCGCGGACAGAGCAGT GGCAAGGGTGCCGTCA ]
[+] EMBL BM635402 [ CCGCCAGGTTCGACGTAACGTTAGCGATCTGCGCATAGCCGCCCACCACCGGGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACATCCCCCAACTAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAACACACAAGAGAAAGTGCATAGTGCATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGATCACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTATGCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGACTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTCAAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGCGTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAAGATGATGCGGCCACGAAAATCCAGGCCGGATTCCGC GGGTACCGAGTGCGCAAGCAGATGCGCGGACAGAGCAGT GGCAAGGGTGCCGTCATCGCTTCGGGCGGAATGGTG CCCGGTGCAGGCGCTGGCTCTGGTTCGGGCACTTCATCGTCCGGCACGGTGGGAGGACA ]
[+] EMBL BM637312 [ CCGCCAGGTTCGACGTAACGTTAGCGATCTGCGCATAGCCGCCCACCACCGGGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACATCCCCCAACTAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAACACACAAGAGAAAGTGCATAGTGCATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGATCACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTATGCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGACTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTCAAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGCGTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAAGATGATGCGGCCACGAAAATCCAGGCCGGATTCCGCGGGGTACCGAGTGCGCAAGCAGATGCGCGGACAGAGCAGT GGCAAGGGTGCCGTCATCGCTTCGGGCGGAATGGTG CCCGGTGCA ]
[+] EMBL BM640347 [ ccGGTTCGACGTGACGTTAGCGATCTGCGCATAGCCGCCCACCACCGGGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACAT CCCAACTAAGCTGAACGTTTTGTTGAAAGAATCGAAAAA ACACAAGAGAAAGTGCATAGTGCATGTATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGATCACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGTGTGTGCTCGTATGCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGTGATCGAGGCTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTCAAGCGTACAGCTTCATCAACAACAATAGCAGCAAGCGCGTCAG CTAGGACAGACCCGCGTAACGCCACCAACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAAGATGATGCGGCCACGAAAATCCAGGCCGGATTCCGC GGGTACCGAGTGCGCAAGCAAATGCGCGGTCAGGGCAGTGGGAGGCAAGGGTGCCGTCATCGCTTCGGGCGGAATGGTGCCCCGGTGCAGGCa ]
[+] EMBL BM636141 [ ccGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACATCCCCCAACTAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAACACACAAGAGAAAGTGCATAGTGCATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGATCACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTATGCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGACTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTCAAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGCGTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAAGATGATGCGGCCACGAAAATCCAGGCCGGATTCCGC GGGTACCGAGTGCGCAAGCAGATGCGCGGACAGAGCAGT GGCAAGGGTGCCGTCATCGCTTCGGGCGGAATGGTG CCCGGTGCAG ]
[+] EMBL BM626619 [ ccgATCCAGTCTGCGTGCAAACACATCCCCCAACTAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAACACACAAGAGAAAGTGCATAGTGCATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGATCACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTATGCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGACTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTCAAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGCGTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAAGATGATGCGGCCACGAAAATCCAGGCCGGATTCCGC GGGTACCGAGTGCGCAAGCAGATGCGCGGACAGAGCAGT GGCAAGGGTGCCGTCATCGCTTCGGGCGGAATGGTG CCCGGTGCAGGCGCTGGCTCTGGTTCGGGCACTTCATCGTCCGGCACGGT GGAGGACAAATCGGCCA]
consensusID : consensus_7843#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence
[CCGCGGACGCGTGGGGTAACGTTAGCGATCTGCGCATAGCCGCCCACCACCGGGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACATCCCCCAACTAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAAAACACAAGAGAAAGTGCATAGTGCATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGATCACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTATGCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGACTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTCAAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGCGTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAAGATGATGCGGCCACGAAAATCCAGGCCGGATTCCGCGGGTACCGAGTGCGCAAGCAGATGCGCGGACAGAGCAGTGGCAAGGGTGCCGTCATCGCTTCGGGCGGAATGGTGCCCGG]
[+] EMBL BM643196 [CCGCGGACGCGTGGGGTAACGTTAGCGATCTGCGCATAGCCGCCCACCACCGGGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACATCCCCCAACTAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAAAACACAAGAGAAAGTGCATAGTGCATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGATCACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTATGCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGACTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTCAAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGCGTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAAGATGATGCGGCCACGAAAATCCAGGCCGGATTCCGCGGGTACCGAGTGCGCAAGCAGATGCGCGGACAGAGCAGTGGCAAGGGTGCCGTCATCGCTTCGGGCGGAATGGTGCCCGG]
consensusID : consensus_7843#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence
[CCGGAAATACTTCGTTCACCAGGTTCGACGTAACGTTAGCGATCTGCGCATAGCCGCCCACCACCGGGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACATCCCCCAACTAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAACACACAAGAGAAAGTGCATAGTGCATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGATCACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTATGCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGACTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTCAAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGCGTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAAGATGATGCGGCCACGAAAATCCAGG]
[+] EMBL BM640870 [CCGGAAATACTTCGTTCACCAGGTTCGACGTAACGTTAGCGATCTGCGCATAGCCGCCCACCACCGGGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACATCCCCCAACTAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAACACACAAGAGAAAGTGCATAGTGCATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGATCACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTATGCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGACTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTCAAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGCGTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAAGATGATGCGGCCACGAAAATCCAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7843#0 CCGCCCACGC---GTCCGCCAG-GTTCGACGTAACGTTAGCGATCTGCGCATAGCCGCCC 56
consensus_7843#2 CCGGAAATACTTCGTTCACCAG-GTTCGACGTAACGTTAGCGATCTGCGCATAGCCGCCC 59
consensus_7843#1 ---------------CCGCGGACGCGTGGGGTAACGTTAGCGATCTGCGCATAGCCGCCC 45
* * * * ******************************
consensus_7843#0 ACCACCGGGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACATCCCCCAAC 116
consensus_7843#2 ACCACCGGGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACATCCCCCAAC 119
consensus_7843#1 ACCACCGGGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACATCCCCCAAC 105
************************************************************
consensus_7843#0 TAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAACACACAAGAGAAAGTGCATAGTGC 176
consensus_7843#2 TAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAACACACAAGAGAAAGTGCATAGTGC 179
consensus_7843#1 TAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAAAACACAAGAGAAAGTGCATAGTGC 165
************************************ ***********************
consensus_7843#0 ATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGAT 236
consensus_7843#2 ATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGAT 239
consensus_7843#1 ATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGAT 225
************************************************************
consensus_7843#0 CACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTAT 296
consensus_7843#2 CACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTAT 299
consensus_7843#1 CACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTAT 285
************************************************************
consensus_7843#0 GCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGA 356
consensus_7843#2 GCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGA 359
consensus_7843#1 GCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGA 345
************************************************************
consensus_7843#0 CTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTC 416
consensus_7843#2 CTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTC 419
consensus_7843#1 CTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTC 405
************************************************************
consensus_7843#0 AAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGC 476
consensus_7843#2 AAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGC 479
consensus_7843#1 AAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGC 465
************************************************************
consensus_7843#0 GTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAA 536
consensus_7843#2 GTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAA 539
consensus_7843#1 GTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAA 525
************************************************************
consensus_7843#0 GATGATGCGGCCACGAAAATCCAGGCCGGATTCCGCGGGTACCGAGTGCGCAAGCAGATG 596
consensus_7843#2 GATGATGCGGCCACGAAAATCCAGG----------------------------------- 564
consensus_7843#1 GATGATGCGGCCACGAAAATCCAGGCCGGATTCCGCGGGTACCGAGTGCGCAAGCAGATG 585
*************************
consensus_7843#0 CGCGGACAGAGCAGTGGCAAGGGTGCCGTCATCGCTTCGGGCGGAATGGTGCCCGGTGCA 656
consensus_7843#2 ------------------------------------------------------------
consensus_7843#1 CGCGGACAGAGCAGTGGCAAGGGTGCCGTCATCGCTTCGGGCGGAATGGTGCCCGG---- 641
consensus_7843#0 GGCGCTGGCTCTGGTTCGGGCACTTCATCGTCCGGCACGGTGGGAGGACAAATCGGCCA 715
consensus_7843#2 -----------------------------------------------------------
consensus_7843#1 -----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||