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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7844#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 798 fasta sequence
[CCGGTAATTCGGTTGGGTTTGTTTGCAAAACTCTGTGCTCAACTTTTGTCGCCCAAATTTTTTCACACCTGCCAGCGGGAAAACGTTAGGAAAAATGCCTTCATTTACGGTGAACGTGAAATGGGGAAAGGAAAGCTTCAAAAACATTGAGGTCAACACGGACGAGGAGCCGATGCTGTTCAAAGCCCAGCTGTTCGCGCTGACCGGTGTCCAGCCGGACCGACAAAAGGTGCTCTGCAAAGGCATTAGCCTGAAGGATGAGGAGTGGAACATGCCGATCAAGAATGGCGCCACGCTGCTGCTGCTCGGCACAAAGGAAGAAGTGCCCCAGGAGCCGGTGGAAAAGCCGAAATTCATAGAGGACATGAACGAGAACGAGCTAGCGACGGCCTTTGATACTCCGGCCGGTTTAGTGAATCTGGGCAACACGTGCTACATGAACGCAACGCTGCAGTGTCTCCGATCGGTGCGCGAGCTGCGCGAAGCGCTGAAGGAATACAAGGAGGAGGCGGGCGGTGCGTC-GGGGCTGGCGGGGCTCGCCTCCCCGCAGGCCATTACCATGTCGATGAAGAACCTGTTCGAGGACATGGA-GCGCCGGAACGATTCGATCACGCCGGTCCTGTTTCTGCAGCGGTTGCACATCGCGTTCCCGAACTTTTCGCAGACGGGCGAGAACGGCACGTACCGGCAGCAGGACGCGAACGAGTGCTGGTCCGAGCTGCTGAAGATGCTACAGCAGAAGCTGCCGGCCCAGAAGCTTGCCCCCCGAGCAGAGCGTGAAGCACAGCTCGTTCATCG]
[+] EMBL BM594526 [CCGGTAATTCGGTTGGGTTTGTTTGCAAAACTCTGTGCTCAACTTTTGTCGCCTAAATTTTTTCACACCTGCCAGCGGGAAAACGTTAGGAAAAATGCCTTCATTTACGGTGAACGTGAAATGGGGAAAGGAAAGCTTCAAAAACATTGAGGTCAACACGGACGAGGAGCCGATGCTGTTCAAAGCCCAGCTGTTCGCGCTGACCGGTGTCCAGCCGGACCGACAAAAGGTGCTCTGCAAAGGCATTAGCCTGAAGGATGAGGAGTGGAACATGCCGATCAAGAATGGCGCCACGCTGCTGCTGCTCGGCACAAAGGAAGAAGTGCCCCAGGAGCCGGTGGAAAAGCCGAAATTCATAGAGGATATGAACGAGAACGAGCTAGCGACGGCCTTTGATACTCCGGCCGGTTTAGTGAATCTGGGCAACACGTGCTACATGAACGCAACGCTGCAGTGTCTCCGATCGGTGCGCGAGCTGCGCGAAGCGCTGAAGGAATACAAGGAGGAGGCGGGCGGTGCGTCGGGGGCTGGCGGGGCTCGCCTCCCCGCAGGCCATTACCATGTCGATGAAGAACCTGTTCGAGGACATGGA GCGCCGGAACGATTCGATCACGCCGGTC ]
[+] EMBL BM637208 [ ccgAATTCGGTTGGGTTTGTTTGCAAAACTCTGTGCTCAACTTTTGTCGCCCAAATTTTTTCACACCTGCCAGCGGGAAAACGTTAGGAAAAATGCCTTCATTTACGGTGAACGTGAAATGGGGAAAGGAAAGCTTCAAAAACATTGAGGTCAACACGGACGAGGAGCCGATGCTGTTCAAAGCCCAGCTGTTCGCCCTGACCGGTGTCCAGCCGGACCGACAAAAGGTGCTCTGCAAAGGCATTAGCCTGAAGGATGAGGAGTGGAACATGCCGATCAAGAATGGCGCCACTCTGCTGCTGCTCGGCACAAAGGAAGAAGTGCCCCAGGAGCCGGTGGAAAAGCCGAAATTCATAGAGGACATGAACGAGAACGAGCTAGCGACGGCCTTTGATACTCCGGCCGGTTTAGTGAATCTGGGCAACACGTGCTACATGAACGCAACGCTGCAGTGTCTCCGATCGGTGCGCGAGCTGCGCGAAGCGCTGAAGGAATACAAGGAGGAGGCGGGCGGTGCGTC GGGGCTGGCGGGGCTCGCCTCCCCCCAGGCCATTACCATGTCGATGAAGAACCTGTTCGAGGACATGGATGCGCCGGAACGATTCGATCACGCCGGTCCTGTTTCTGCAGCGGTTGCACATCGCGTTCCCGAACTTT ]
[+] EMBL BM595490 [ ccGGTTTTGTTTGCAAAACTCTGTGCTCAACTTTTGTCGCCCAAATTTTTTCACACCTGCCAGCGGGAAAACGTTAGGAAAAATGCCTTCATTTACGGTGAACGTGAAATGGGGAAAGGAAAGCTTCAAAAACATTGAGGTCAACACGGACGAGGAGCCGATGCTGTTCAAAGCCCAGCTGTTCGCCCTGACCGGTGTCCAGCCGGACCGACAAAAGGTGCTCTGCAAAGGCATTAGCCTGAAGGATGAGGAGTGGAACATGCCGATCAAGAATGGCGCCACTCTGCTGCTGCTCGGCACAAAGGAAGAAGTGCCCCAGGAGCCGGTGGAAAAGCCGAAATTCATAGAGGACATGAACGAGAACGAGCTAGCGACGGCCTTTGATACTCCGGCCGGATTAGTGAATCTGGGCAACACGTGCTACATG ]
[+] EMBL BM627837 [ ccGGTTTGTTTGCAAAACTCTGTGCTCAACTTTTGTCGCCCAAATTTTTTCACACCTGCCAGCGGGAAAACGTTAGGAAAAATGCCTTCATTTACGGTGAACGTGAAATGGGGAAAGGAAAGCTTCAAAAACATTGAGGTCAACACGGACGAGGAGCCGATGCTGTTCAAAGCCCAGCTGTTCGCGCTGACCGGTGTCCAGCCGGACCGACAAAAGGTGCTCTGCAAAGGCATTAGCCTGAAGGATGAGGAGTGGAACATGCCGATCAAGAATGGCGCCACGCTGCTGCTGCTCGGCACAAAGGAAGAAGTGCCCCAGGAGCCGGTGGAAAAGCCGAAATTCATAGAGGACATGAACGAGAACGAGCTAGCGACGGCCTTCGATACTCCGGCCGGTTTAGTGAATCTGGGCAACACGTGCTACATGAACGCAACGCTGCAGTGTCTCCGATCGGTGCGCGAGCTGCGCGAAGCGCTGAAGGAATACAAGGAGGAGGCGGGCGGTGCGTC GGGGCTGGCGGGGCTCGCCTCCCCGCAGGCCATTACCATGTCGATGAAGAACCTGTTCGAGGACATGGA GCGCCGGAACGATTCGATCACGCCGGTCCTGTTTCTGCAGCGGTTGCACATC ]
[+] EMBL BM585263 [ ccgGTTTGCAAAACTCTGTGCTCAACTTTTGTCGCCCAAATTTTTTCACACCTGCCAGCGGGAAAACGTTAGGAAAAATGCCTTCATTTACGGTGAACGTGAAATGGGGAAAGGAAAGCTTCAAAAACATTGAGGTCAACACGGACGAGGAGCCGATGCTGTTCAAAGCCCAGCTGTTCGCGCTGACCGGTGTCCAGCCGGACCGACAAAAGGTGCTCTGCAAAGGCATTAGCCTGAAGGATGAGGAGTGGAACATGCCGATCAAGAATGGCGCCACGCTGCTGCTGCTCGGCACAAAGGAAGAAGTGCCCCAGGAGCCGGTGGAAAAGCCGAAATTCATAGAGGACATGAACGAGAACGAGCTAGCGACGGCCTTCGATACTCCGGCCGGTTTAGTGAATCTGGGCAACACGTGCTACATGAACGCAACGCTGCAGTGTCTCCGATCGGTGCGCGAGCTGCGCGAAGCGCTGAAGGAATACAAGGAGGAGGCGGGCGGTGCGTC GGGGCTGGCGGGGCTCGCCTCCCCGCAGGCCATTACCATGTCGATGAAGAACCTGTTCGAGGACATGGA GCGCCGGAACGATTCGATCACGCCGGTCCTGTTTCTGCAGCGGTTGCACATCGCGTTCCCGAACTTTTCGCAGACGGGCGAGAACGGCACGTACCGGCAGCAGGACGCGAACGAGTGCTGG ]
[+] EMBL BM636261 [ ccgGGGGAAAGGAAAGCTTCAAAAACATTGAGGTCAACACGGACGAGGAGCCGATGCTGTTCAAAGCCCAGCTGTTCGCGCTGACCGGTGTCCAGCCGGACCGACAAAAGGTGCTCTGCAAAGGCATTAGCCTGAAGGATGAGGAGTGGAACATGCCGATCAAGAATGGCGCCACGCTGCTGCTGCTCGGCACAAAGGAAGAAGTGCCCCAGGAGCCGGTGGAAAAGCCGAAATTCATAGAGGACATGAACGAGAACGAGCTAGCGACGGCCTTCGATACTCCGGCCGGTTTAGTGAATCTGGGCAACACGTGCTACATGAACGCAACGCTGCAGTGTCTCCGATCGGTGCGCGAGCTGCGCGAAGCGCTGAAGGAATACAAGGAGGAGGCGGGCGGTGCGTC GGGGCTGGCGGGGCTCGCCTCCCCGCAGGCCATTACCATGTCGATGAAGAACCTGTTCGAGGACATGGA GCGCCGGAACGATTCGATCACGCCGGTCCTGTTTCTGCAGCGGTTGCACATCGCGTTCCCGAACTTTTCGCAGACGGGCGAGAACGGCACGTACCGGCAGCAGGACGCGAACGAGTGCTGGTCCGAGCTGCTGAAGATGCTACAGCAGAAGCTGCCGGCCCAGAAGCTTGCCCCCCGAGCAGAGCGTGAAGCACAGCTCGTTCATCG]
consensusID : consensus_7844#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGTTCCCGAACTTTTCGCAGACGGGCGAGAACGGCACGTACCGGCAGCAGGACGCGAACGAGTGCTGGTCCGAGCTGCTGAAGATGCTACAGCAGAAGCTGCCGGCCCAGAAGCTTGCCCCCGAGCAGAGCGTGAAGCACAGCTCGTTCATCGATCAATGGTTCGGCGGCACGTTCGACGTGGAGATGAAGTGTACCGAGGCGGAGGATGAGCCGGCGAGCAAATCGAAAGAAAACTTCCTGCAGCTCAGCTGCTTCATTTCCACCGAGGTGAAATACATGCACTCCGGATTGCGATTGAGACTGAAGGAACAGCTGACTAAAATGTCTCCCTCCCTCGGGCGTGATGCTGTTTATTCGAAAACGTCGCTGATCAGCCGTCTGCCGGCCTACCTGACGGTCCAGTTCGTCCGGTTCCAGTACAAGGGCAAGGAGGGCATCAATGCGAAGGTGCTGAAGGACATCAAGTTCCCGATCGAGTTCGACGCGTACGAGCTGTGCACGCCCGAGCTGCAGGAAAAGCTGACCCCGATGCGCACCAAATTCAACGAGATCGCAAACCGGAGGTCGAGCGTACGCTCAAGGGCAAGAACAAATCGAAGGCCGAGCTGGAAAAGGAGAAACCCAAGACTGTTCCCCAACC]
[+] EMBL BM584578 [CCGCCCACGCGTCCGCCCACGCGTCCGGTTCCCGAACTTTTCGCAGACGGGCGAGAACGGCACGTACCGGCAGCAGGACGCGAACGAGTGCTGGTCCGAGCTGCTGAAGATGCTACAGCAGAAGCTGCCGGCCCAGAAGCTTGCCCCCGAGCAGAGCGTGAAGCACAGCTCGTTCATCGATCAATGGTTCGGCGGCACGTTCGACGTGGAGATGAAGTGTACCGAGGCGGAGGATGAGCCGGCGAGCAAATCGAAAGAAAACTTCCTGCAGCTCAGCTGCTTCATTTCCACCGAGGTGAAATACATGCACTCCGGATTGCGATTGAGACTGAAGGAACAGCTGACTAAAATGTCTCCCTCCCTCGGGCGTGATGCTGTTTATTCGAAAACGTCGCTGATCAGCCGTCTGCCGGCCTACCTGACGGTCCAGTTCGTCCGGTTCCAGTACAAGGGCAAGGAGGGCATCAATGCGAAGGTGCTGAAGGACATCAAGTTCCCGATCGAGTTCGACGCGTACGAGCTGTGCACGCCCGAGCTGCAGGAAAAGCTGACCCCGATGCGCACCAAATTCAACGAGATCGCAAACCGGAGGTCGAGCGTACGCTCAAGGGCAAGAACAAATCGAAGGCCGAGCTGGAAAAGGAGAAACCCAAGACTGTTCCCCAACC]
consensusID : consensus_7844#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 409 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGCTTTGATACTCCGGCCGGTTTAGTGAATCTGGGCAACACGTGCTACATGAACGCAACGCTGCAGTGTCTCCGATCGGTGCGCGAGCTGCGCGAAGCGCTGAAGGAATACAAGGAGGAGGCGGGCGGTGCGTCGGGGCTGGCGGGGCTCGCCTCCCCGCAGGCCATTACCATGTCGATGAAGAACCTGTTCGAGGACATGGAGCGCCGGAACGATTCGATCACGCCGGTCCTGTTTCTGCAGCGGTTGCACATCGCGTTCCCGAACTTTTCGCAGACGGGCGAGAACGGCACGTACCGGCAGCAGGACGCGAACGAGTGCTGGTCCGAGCTGCTGAAGATGCTACAGCAGAAGCTGCCGGCCCAGAAGCTTGCCCCCGAGCAG]
[+] EMBL BM623737 [CCGCGGACGCGTGGGCGGACGCGTGGGCTTTGATACTCCGGCCGGTTTAGTGAATCTGGGCAACACGTGCTACATGAACGCAACGCTGCAGTGTCTCCGATCGGTGCGCGAGCTGCGCGAAGCGCTGAAGGAATACAAGGAGGAGGCGGGCGGTGCGTCGGGGCTGGCGGGGCTCGCCTCCCCGCAGGCCATTACCATGTCGATGAAGAACCTGTTCGAGGACATGGAGCGCCGGAACGATTCGATCACGCCGGTCCTGTTTCTGCAGCGGTTGCACATCGCGTTCCCGAACTTTTCGCAGACGGGCGAGAACGGCACGTACCGGCAGCAGGACGCGAACGAGTGCTGGTCCGAGCTGCTGAAGATGCTACAGCAGAAGCTGCCGGCCCAGAAGCTTGCCCCCGAGCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7844#0 CCGGTAATTCGGTTGGGTTTGTTTGCAAAACTCTGTGCTCAACTTTTGTCGCCCAAATTT 60
consensus_7844#2 ------------------------------------------------------------
consensus_7844#1 ------------------------------------------------------------
consensus_7844#0 TTTCACACCTGCCAGCGGGAAAACGTTAGGAAAAATGCCTTCATTTACGGTGAACGTGAA 120
consensus_7844#2 ------------------------------------------------------------
consensus_7844#1 -------------------------------------CCGCCCACGCGTCCGCCCACGCG 23
consensus_7844#0 ATGGGGAAAGGAAAGCTTCAAAAACAT-TGAGGTCAACACGGACGAGGAGCCGATGCTGT 179
consensus_7844#2 ------------------------------------------------------------
consensus_7844#1 TCCGGTTCCCGAACTTTTCGCAGACGGGCGAGAACGGCACGTACCGGCAGCAGGACGCGA 83
consensus_7844#0 TCAAAGCCCAGCTGTTCGCGCTGACCGGTGTCCAGCCGGACCGACAAAAGGTGCTCTGCA 239
consensus_7844#2 ------------------------------------------------------------
consensus_7844#1 ACGAGTGCTGGTCCGAGCTGCTGA---------AGATGCTACAGCAGAAGCTGCCGGCCC 134
consensus_7844#0 AAGGCATTAGCCTGAAGGATGAGGAGTGGAACATGCCGATCAAGAATGGCGCCACGCTGC 299
consensus_7844#2 ------------------------------------------------------------
consensus_7844#1 AGAAGCTTGCCCCCGAGCAGAGCGTGAAGCACAGCTCGTTCATCGATCA-ATGGTTCGGC 193
consensus_7844#0 TGCTGCTCGGCACAAAGGAAGAAGTGCCCCAGGAGCCGGTGGAAAAGCCGAAATTCATAG 359
consensus_7844#2 ------------------------------------------------------------
consensus_7844#1 GGCACGTTCGACGTGGAGATGAAGTGTACC--GAGGCGGAGGATGAGCCGGCGAGCAAAT 251
consensus_7844#0 AGGACATGAACGAGAACGAGCTAGCGACGGCCTTTGATACTCCGGCCGGTTTAGTGAA-T 418
consensus_7844#2 ---CCGCGGACGCGTGGGCGGACGCG-TGGGCTTTGATACTCCGGCCGGTTTAGTGAA-T 55
consensus_7844#1 CGAAAGAAAACTTCCTGCAGCTCAGCTGCTTCATTTCCACCGAGGTGAAATACATGCACT 311
** * * ** ** ** * ** * *
consensus_7844#0 CTGGGCAACACGTG---CTACATGAACGCAACGCTGCAGTGTCTCCGATCGGTGCGCGAG 475
consensus_7844#2 CTGGGCAACACGTG---CTACATGAACGCAACGCTGCAGTGTCTCCGATCGGTGCGCGAG 112
consensus_7844#1 CCGGATTGCGATTGAGACTGAAGGAACAGCTGACTAAAATGTCTCCCTCCCTCGGGCGTG 371
* ** * ** ** * **** ** * ******* * * *** *
consensus_7844#0 CTGCGCGAAGCGCTGAAGGAATAC-AAGGAGGAGGCGGGCGGTGCGTCGG---GGCTGGC 531
consensus_7844#2 CTGCGCGAAGCGCTGAAGGAATAC-AAGGAGGAGGCGGGCGGTGCGTCGG---GGCTGGC 168
consensus_7844#1 ATGCTGTTTATTCGAAAACGTCGCTGATCAGCCGTCTGCCGGCCTACCTGACGGTCCAGT 431
*** * ** * * ** * * * *** * * * * *
consensus_7844#0 GGGGCTCGCCTCCCCGCA--GGCCATTACCATGTCGATGAAGAACCTGTTCGAGGACATG 589
consensus_7844#2 GGGGCTCGCCTCCCCGCA--GGCCATTACCATGTCGATGAAGAACCTGTTCGAGGACATG 226
consensus_7844#1 TCGTCCGGTTCCAGTACAAGGGCAAGGAGGGCATCAATGC-GAAGGTGCTGAAGGACATC 490
* * * * ** *** * * ** *** *** ** * *******
consensus_7844#0 GAGCGCCGGAACGATTCGATCACGCCGGTCCTGTTTCTGCAGCGGTTGCACATCGCGTT- 648
consensus_7844#2 GAGCGCCGGAACGATTCGATCACGCCGGTCCTGTTTCTGCAGCGGTTGCACATCGCGTT- 285
consensus_7844#1 AAGTTCCCGATCGAGTTCGACGCGTACGAGCTGTGCACGCCCGAGCTGCAGGAAAAGCTG 550
** ** ** *** * * ** * **** ** * **** * *
consensus_7844#0 --CCCGAACTTTTCGCAGACGGGCGAGAACGGCACGTACCGGCAGCAGGACG--CGAACG 704
consensus_7844#2 --CCCGAACTTTTCGCAGACGGGCGAGAACGGCACGTACCGGCAGCAGGACG--CGAACG 341
consensus_7844#1 ACCCCGATGCGCACCAAATTCAACGAGATCG---CAAACCGGAGGTCGAGCGTACGCTCA 607
***** * * ***** ** * ***** * * ** ** *
consensus_7844#0 AGTGCTGGTCCGAGCTGCTGAAGATGCTACAGCAGAAGCTGCCGGCCCAGAAGCTTGCCC 764
consensus_7844#2 AGTGCTGGTCCGAGCTGCTGAAGATGCTACAGCAGAAGCTGCCGGCCCAGAAGCTTGCCC 401
consensus_7844#1 AGGGCAAGAACAAATCGAAGGCCGAGCTGGAAAAGGAGAAACCC------AAGACTGTTC 661
** ** * * * * * *** * ** ** ** *** ** *
consensus_7844#0 CCCGAGCAGAGCGTGAAGCACAGCTCGTTCATCG 798
consensus_7844#2 CC-GAGCAG------------------------- 409
consensus_7844#1 CCCAACC--------------------------- 668
** * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||