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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7856#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1582 fasta sequence
[CCGCGGTCTGTTCCCGAGCTACGTGGATTCGGAGATACGCGGTTTTCTAAATTTGACAATCCATAAGTCAATTCAGTACAATTTGCTTCTCGAATTTTCCCAAAGCGAACTAATTTTCTTCTTTGTCAAAAGCTTTAAAGTTATCTTTGTTTAAACCGCTATAAAGCCGTAAATTTCTAAATTTCCTGCATGAGTCGTATTAAATAAATAGTAAAGTGTATAAAAGTATTAAATTTAATCAAAGGTATAAAGTTTTCGAATGTATTTGGCTGAGAAACGTGATCTTTTACTTTCGCGGATATTCGGGTTACGTGGATGGCCCAGGAACGCATAAATTCCTTATCTCGGGAGCAGACTGTATATAGTTCAAAATGACTAAAAGAAGAATCGTATCGAATTGTTCCTTCTTACGATTGGAGAATGTGTCCTATAATGCTATTGGAACAAATAAACATTAAACAAATCAATTAGTTTATCTAGCAACAACTACAAAAACAGTAACATTGGATATTTCTTCACAATGATCTGGCAAGATTATGATAAAACCAGTTCTTGTGCCAGAAATTTCTGAGGGAGAAAACGGAAAAAAACGTTCCAATTTTGAAAAACATTCAAACAATTTTTAACAGAATGTATACAATCGTAAATACATCATACGCTTCTTTGAGCGTTGATTTGTTATAATGTTTCGTTACGATGAAATATAGATCTTTCAGTAGATAAACCTGAGGGAAATATGTTGATAATGAGGAATGATTTTTCAAACTTGATCTAAGAAGAATATTAATAGATTTAAACTGAAACAAATAGTGTATGCGACAAGCAAAGATGTTAACAGCAGTCAAGATGGTAACTAAATTATATACCCATTAAAATCAAATTAATCTTAAGAATGTACAGAAATGTTGTGTCTTTATTTACGAAGTGGATTTAATCTTTAAAAGATAATTATTAAAACATAAAATTGTCAATATTCACCGAGGATGCCATGCTCTCCAAATATTATTGAATTAAACTTCATTTTATATTGGAAAAGTCAACAATTCAATTTCATGTAATACAGAAATATATATATCCGTGATCCGTACAATTAGAGGTTTTAGTTGTTAATGTTACTCTTTAAACCGATTTTTAACTGTAGAATAAAAATCTATTCACTTGTTACAATTCTCACAGTATCTGGTTAACTAAAATGATACCAATTTTAAACCTTGATTCGATGTATGAACGTCGTCTGGCAGATGTGATTCGACGTGAAAATAGGCTATAGCGGATCGAACTATGTCGAAATCATAGTAATTTGTAACAACAAGCAAGACGAGACGATGAGCAAGAATCAAACAATACAAACAAACAATACTCCA-ATTAGCAAAGGCTAAAATTCACTGCTGTATACGTTTTGAAATTCTACATCATGACTGTCAATTAAACATATCTTGTTCACATTTCAAATGTGAGCTGTTGGAAATCATCTTCAAAACATTGAGATGTCAAATATTAACACCAATTTCATGTCAATTGAAAAAAGATACAAAGCGTTTGATCAATGATATATTATATTCCGATAGTAAATAATAAAATT]
[+] EMBL BM627176 [CCGCGGTCTGTTCCCGAGCTACGTGGATTCGGAGATACGCGGTTTTCTAAATTTGACAATCCATAAGTCAATTCAGTACAATTTGCTTCTCGAATTTTCCCAAAGCGAACTAATTTTCTTCTTTGTCAAAAGCTTTAAAGTTATCTTTGTTTAAACCGCTATAAAGCCGTAAATTTCTAAATTTCCTGCATGAGTCGTATTAAATAAATAGTAAAGTGTATAAAAGTATTAAATTTAATCAAAGGTATAAAGTTTTCGAATGTATTTGGCTGAGAAACGTGATCTTTTACTTTCGCGGATATTCGGGTTACGTGGATGGCCCAGGAACGCATAAATTCCTTATCTCGGGAGCAGACTGTATATAGTTCAAAATGACTAAAAGAAGAATCGTATCGAATTGTTCCTTCTTACGATTGGAGAATGTGTCCTATAATGCTATTGGAACAAATAAACATTAAACAAATCAATTAGTTTATCTAGCAACAACTACAAAAACAGTAACATTGGATATTTCTTCACAATGATCTGGCAAGATTATGATAAAACCAGTTCTTGTGCCAGAAATTTCTGAGGGAGAAAACGGAAAAAAACGTTCCAATTTTGAAAAACATTCAAACAATTTTTAACAGAATGTATACAATCGTAAATACATCATACGCTTCTTTGAGCGTTGATTTGTTATAAT ]
[+] EMBL BX614639 [ CGGGAGCAGACTGTATATAGTTCAAAATGACTAAAAGAAGAATCGTATCGAATTGTTCCTTCTTACGATTGTAGAATGTGTCCTATAATGCTATTGGAACAAATAAACATTAAACAAATCAATTAGTTTATCTAGCAACAACTACAAAAACAGTAACATTGGATATTTCTTCACAATGATCTGGCAAGATTATGATAAAACCAGTTCTTGTGCCAGAAATTTCTGAGGGAGAAAACGGAAAAAAACGTTCCAATTTTGAAAAACATTCAAACAATTTTTAACAGAATGTATACAATCGTAAATACATCATACGCTTCTTTGAGCGTTGATTTGTTATAATGTTTCGTTACGATGAAATATAGATCTTTCAGTAGATAAACCTGAGGGAAATATGTTGATAATGAGGAATGATTTTTCAAACTTGATCTAAGAAGAATATTAATAGATTTAAACTGAAACAAATAGTGTATGCGACAAGCAAAGATGTTAACAGCAGTCAAGATGGTAACTAAATTATATACCCATTAAAATCAAATTAATCTTAAGAATGTACAGAAATGTTGTGTCTTTATTTACGAAGTGGATTTAATCTTTAAAAGAT ]
[+] EMBL BX626527 [ GTTGATTTGTTATAATGTTTCGTTACGATGAAATATAGATCTTTCAGTAGATAAACCTGAGGGAAATATGTTGATAATGAGGAATGATTTTTCAAACTTGATCTAAGAAGAATATTAATAGATTTAAACTGAAACAAATAGTGTATGCGACAAGCAAAGATGTTAACAGCAGTCAAGATGGTAACTAAATTATATACCCATTAAAATCAAATTAATCTTAAGAATGTACAGAAATGTTGTGTCTTTATTTACGAAGNGGATTTAATCTTTAAAAGATAATTATTAAAACATAAAATTGTCAATATTCACCGAGGATGCCATGNTCTCCAAATATTATTGAATTAAACTTCATTTTATATTGGAAAAGTCAACAATTCAATTTCATGNAATACAGAAATATATATAT ]
[+] EMBL BX623892 [ ATGGTAACTAAATTATATACCCATTAAAATCAAATTAATCTTAAGAATGTACAGAAATGTTGTGTCTTTATTTACGAAGTGGATTTAATCTTTAAAAGATAATTATTAAAACATAAAATTGTCAATATTCACCGAGGATGCCATGCTCTCCAAATATTATTGAATTAAACTTCATTTTATATTGGAAAAGTCAACAATTCAATTTCATGTAATACAGAAATATATATATCCGTGATCCGTACAATTAGAGGTTTTAGTTGTTAATGTTACTCTTTAAACCGATTTTTAACTGTAGAATAAAAATCTATTCACTTGTTACAATTCTCACAGTATCTGGTTAACTAAAATGATACCAATTTTAAACCTTGATTCGATGTATGAACGTCGTCTGGCAGATGTGATTCGACGTGAAAATAGGCTATAGCGGATCGAACTATGTCGAAATCATAGTAATTTGTAACAACAAGCAAGACGAGACGATGAGCAAGAATCAAACAATACAAACAAACAATACTCCA ATTAGCAAAGGCTAAAATTCACTGCTGTATACGTTTTGAAATTCTACATCATGACTGTCAATTAAACATATCTTGTTCACATTTCAAATGTGAGCTGTTGGAAATCATCTTCAAAACATTGAGATGTCAAATATTAACACCAATTTCATGTCAATTGAAAAAAGATACAAAGCGTTTGATCAATGATATATTATATTCCGATAGTAAATAATAAAATT]
[+] EMBL BX620910 [ TTTAATCTTTAAAAGATAATTATTAAAACATAAAATTGTCAATATTCACCGAGGATGCCATGCTCTCCAAATATTATTGAATTAAACTTCATTTTATATTGGAAAAGTCAACAATTCAATTTCATGTAATACAGAAATATATATATCCGTGATCCGTACAATTAGAGGTTTTAGTTGTTAATGTTACTCTTTAAACCGATTTTTAACTGTAGAATAAAAATCTATTCACTTGTTACAATTCTCACAGTATCTGGTTAACTAAAATGATACCAATTTTAAACCTTGATTCGATGTATGAACGTCGTCTGGCAGATGTGATTCGACGTGAAAATAGGCTATAGCGGATCGAACTATGTCGAAATCATAGTAATTTGTAACAACAAGCAAGACGAGACGATGAGCAAGAATCAAACAATACAAACAAACAATACTCCA ATTAGCAAAGGCTAAAATTCACTGCTGTATACGTTTTGAAATTCTACATCATGACTGTCAATTAAACATATCTTGTTCACATTTCAAATGTGAGCTGTTGGAAATCATCTTCAAAACATTGAGATGTCAAATATTAACACCAATTTCATGTCAATTGAAAAAAGATACAAAGCGTTTGATCAATGATATATTATATTC ]
[+] EMBL BX621054 [ ATTCTCACAGGATCTGGTTAACTAAAATGATACCAATTTTAAACCTTGATTCGATGTATGAACGTCGTCTGGNAGATGTGATTCGACGTGAAAATAGGCTATAGCGGATCGAACTATGTNGAAATCATAGTAATTTGTAACAACAAGCAAGACGAGACGATGAGCAAGAATCANACAATACAAACAAACAATACTCCACATTAGNAAAGGCTAAAATTCACTGCTGTATACGTTTTGAANTTCTACATCATGACTGTCGATTAAACATATCNTGATCACATTTCNAATGTGAGCTGTTGGAAATCATCTTCAAAACATTGAGATGTCAAATATTAACAC ]
consensusID : consensus_7856#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence
[CCGATACGGTCTGTTCCCGAGCTACGTGGATTCGGAGATACGCGGTTTTCTAAATTTGACAATCCATAAGTCAATTCAGTACAATTTGCTTCTCGAATTTTCCCAAAGCGAACTAATTTTCTTCATGTGACGAAAGAGTCCATAAGGACCAAAGTCACTATAATTCTTTGACAGACAGACAGAACTAATTTTCTTCTTTGTCAAAAGCTTTAAAGTTATCTTTGTTTAAACCGCTATAAAGCCGTAAATTTCTAAATTTCCTGCATGAGTCGTATTAAATAAATAGTAAAGTGTATAAAAGTATTAAATTTAATCAAAGGTATAAAGTTTTCGAATGTATTTGGCTGAGAAACGTGATCTTTTACTTTCGCGGATATTCGGGTTACGTGGATGGCCCAGGAACGCATAAATTGCTTATCTCGGGAGCAGACTGTATATAGTTCAAAATGACTAAAAGAAGAATCGTATCGAATTGTTCCTTCTTACGATTGGAGAATGTGTCCTATAATGCTATTGGAACAAATAAACATTAAACAAATCAATTAGTTTATCTAGCAACAACTACAAAAAACAGTAACATTGGATATTTCTTCACAATGATCTGGCAAGATTATGATAAAACCAGTTCTTGTGCCAGAAATTTCTGAGGGAAAAAACGGAAAAAACGT]
[+] EMBL BM643083 [CCGATACGGTCTGTTCCCGAGCTACGTGGATTCGGAGATACGCGGTTTTCTAAATTTGACAATCCATAAGTCAATTCAGTACAATTTGCTTCTCGAATTTTCCCAAAGCGAACTAATTTTCTTCATGTGACGAAAGAGTCCATAAGGACCAAAGTCACTATAATTCTTTGACAGACAGACAGAACTAATTTTCTTCTTTGTCAAAAGCTTTAAAGTTATCTTTGTTTAAACCGCTATAAAGCCGTAAATTTCTAAATTTCCTGCATGAGTCGTATTAAATAAATAGTAAAGTGTATAAAAGTATTAAATTTAATCAAAGGTATAAAGTTTTCGAATGTATTTGGCTGAGAAACGTGATCTTTTACTTTCGCGGATATTCGGGTTACGTGGATGGCCCAGGAACGCATAAATTGCTTATCTCGGGAGCAGACTGTATATAGTTCAAAATGACTAAAAGAAGAATCGTATCGAATTGTTCCTTCTTACGATTGGAGAATGTGTCCTATAATGCTATTGGAACAAATAAACATTAAACAAATCAATTAGTTTATCTAGCAACAACTACAAAAAACAGTAACATTGGATATTTCTTCACAATGATCTGGCAAGATTATGATAAAACCAGTTCTTGTGCCAGAAATTTCTGAGGGAAAAAACGGAAAAAACGT]
consensusID : consensus_7856#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 182 fasta sequence
[AAATCAATTCACTGGGAACAATCCCCACAGTACCCGGGTAACTAAAATGATACCAATACAAAACCTGGATTCGATGGAGGAACGTCGTCCGGCAGAAGTGATTCGACGTGAAAATAGGGTAAAGCGGAACGAACTATGTCGAAATCATAGTAAATTGTAACAACAAGCAAGAAGAGACGATG]
[+] EMBL BX615649 [AAATCAATTCACTGGGAACAATCCCCACAGTACCCGGGTAACTAAAATGATACCAATACAAAACCTGGATTCGATGGAGGAACGTCGTCCGGCAGAAGTGATTCGACGTGAAAATAGGGTAAAGCGGAACGAACTATGTCGAAATCATAGTAAATTGTAACAACAAGCAAGAAGAGACGATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7856#0 CCGCGGTCTGTTCCCGAGCTACGTGGATTCGGAGATACGCGGTTTTCTAAATTTGACAAT 60
consensus_7856#2 ------------------------------------------------------------
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 CCATAAGTCAATTCAGTACAATTTGCTTCTCGAATTTTCCCAAAGCGAACTAATTTTCTT 120
consensus_7856#2 ------------------------------------------------------------
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 CTTTGTCAAAAGCTTTAAAGTTATCTTTGTTTAAACCGCTATAAAGCCGTAAATTTCTAA 180
consensus_7856#2 ------------------------------------------------------------
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 ATTTCCTGCATGAGTCGTATTAAATAAATAGTAAAGTGTATAAAAGTATTAAATTTAATC 240
consensus_7856#2 ------------------------------------------------------------
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 AAAGGTATAAAGTTTTCGAATGTATTTGGCTGAGAAACGTGATCTTTTACTTTCGCGGAT 300
consensus_7856#2 ------------------------------------------------------------
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 ATTCGGGTTACGTGGATGGCCCAGGAACGCATAAATTCCTTATCTCGGGAGCAGACTGTA 360
consensus_7856#2 ------------------------------------------------------------
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 TATAGTTCAAAATGACTAAAAGAAGAATCGTATCGAATTGTTCCTTCTTACGATTGGAGA 420
consensus_7856#2 ------------------------------------------------------------
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 ATGTGTCCTATAATGCTATTGGAACAAATAAACATTAAACAAATCAATTAGTTTATCTAG 480
consensus_7856#2 ------------------------------------------------------------
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 CAACAACTACAAAAACAGTAACATTGGATATTTCTTCACAATGATCTGGCAAGATTATGA 540
consensus_7856#2 ------------------------------------------------------------
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 TAAAACCAGTTCTTGTGCCAGAAATTTCTGAGGGAGAAAACGGAAAAAAACGTTCCAATT 600
consensus_7856#2 ------------------------------------------------------------
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 TTGAAAAACATTCAAACAATTTTTAACAGAATGTATACAATCGTAAATACATCATACGCT 660
consensus_7856#2 ------------------------------------------------------------
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 TCTTTGAGCGTTGATTTGTTATAATGTTTCGTTACGATGAAATATAGATCTTTCAGTAGA 720
consensus_7856#2 ------------------------------------------------------------
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 TAAACCTGAGGGAAATATGTTGATAATGAGGAATGATTTTTCAAACTTGATCTAAGAAGA 780
consensus_7856#2 ------------------------------------------------------------
consensus_7856#1 -------------------CCGATACGGTCTGTTCCCGAGCTACGTGGATTCGGAGATAC 41
consensus_7856#0 ATATTAATAGATTTAAACTGAAACAAATAGTGTATGCGACAAGCAAAGATGTTAACAGCA 840
consensus_7856#2 ------------------------------------------------------------
consensus_7856#1 GCGGTTTTCTAAATTTGACAATCCATAAGTCAATTCAGTACAATTTGCTTCTCGAATTTT 101
consensus_7856#0 GTCAAGATGGTAACTAAATTATATACCCATTAAAATCAAATTAATCTTAAGAATGTACAG 900
consensus_7856#2 ------------------------------------------------------------
consensus_7856#1 CCCAAAGCGAACTAATTTTCTTCATGTGACGAAAGAGTCCATAAGGACCAAAGTCACTAT 161
consensus_7856#0 AAATGTTGTGTCTTTATTTACGAAGTGGATTTAATCTTTAAAAGATAATTATTAAAACAT 960
consensus_7856#2 ------------------------------------------------------------
consensus_7856#1 AATTCTTTGACAGACAGACAGAACTAATTTTCTTCTTTGTCAAAAGCTTTAAAGTTATCT 221
consensus_7856#0 AAAATTGTCAATATTCACCGAGGATGCCATGCTCTCCAAATATTATTGAATTAAACTTCA 1020
consensus_7856#2 ------------------------------------------------------------
consensus_7856#1 TTGTTTAAACCGCTATAAAGCCGTAAATTTCTAAATTTCCTGCATGAGTCGTATTAAATA 281
consensus_7856#0 TTTTATATTGGAAAAGTCAACAATTCAATTTCATGTAATACAGAAATATATATATCCGTG 1080
consensus_7856#2 ------------------------------------------------------------
consensus_7856#1 AATAGTAAAGTGTATAAAAGTATTAAATTTAATCAAAGGTATAAAGTTTTCGAATGTATT 341
consensus_7856#0 ATCCGTACAATTAGAGGTTTTAGTTGTTAATGTTACTCTTTAAACCGATTTTTAACTGTA 1140
consensus_7856#2 ------------------------------------------------------------
consensus_7856#1 TGGCTGAGAAACGTGATCTTTTACTTTCGCGGATATTCGGGTTACGTGGATGGCCCAGGA 401
consensus_7856#0 GAATAAAAATCTATTCACT-TGTTACAATTCTCACAGTATCTGGT-TAACTAAAATGATA 1198
consensus_7856#2 ------AAATCAATTCACT-GGGAACAATCCCCACAGTACCCGGG-TAACTAAAATGATA 52
consensus_7856#1 ACGCATAAATTGCTTATCTCGGGAGCAGACTGTATATAGTTCAAAATGACTAAAAGAAGA 461
**** ** ** * ** * * * ******* * *
consensus_7856#0 CCAATTTTAAA-----CCTTGATTCGATGTATGAACGTCGTCTGGCAGATGTGATTCGAC 1253
consensus_7856#2 CCAATACAAAA-----CCTGGATTCGATGGAGGAACGTCGTCCGGCAGAAGTGATTCGAC 107
consensus_7856#1 ATCGTATCGAATTGTTCCTTCTTACGATTGGAGAATGT-GTCCTATAATGCTATTGGAAC 520
* ** *** * **** *** ** *** * * * **
consensus_7856#0 G--TGAAAATAGGCTATAGCGG--ATCGAACTATGTCGAAATCATAGTAATTTGTAACAA 1309
consensus_7856#2 G--TGAAAATAGGGTAAAGCGG--AACGAACTATGTCGAAATCATAGTAAATTGTAACAA 163
consensus_7856#1 AAATAAACATTAAACAAATCAATTAGTTTATCTAGCAACAACTACAAAAAACAGTAACAT 580
* ** ** * * * * * * ** * * ** ******
consensus_7856#0 CAAGCAAGACGAGACGATGAGCAAGAATCAAACAATACAAACAAACAATACTCCAATTAG 1369
consensus_7856#2 CAAGCAAGAAGAGACGATG----------------------------------------- 182
consensus_7856#1 TGGATATTTCTTCACAATGATCTGGCAAGATTATGATAAAACCAGTTCTTGTGCCAGAAA 640
* ** ***
consensus_7856#0 CAAAGGCTAAAATTCACTGCTGTATACGTTTTGAAATTCTACATCATGACTGTCAATTAA 1429
consensus_7856#2 ------------------------------------------------------------
consensus_7856#1 TTTCTGAGGGAAAAAACGGAAAAAACGT-------------------------------- 668
consensus_7856#0 ACATATCTTGTTCACATTTCAAATGTGAGCTGTTGGAAATCATCTTCAAAACATTGAGAT 1489
consensus_7856#2 ------------------------------------------------------------
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 GTCAAATATTAACACCAATTTCATGTCAATTGAAAAAAGATACAAAGCGTTTGATCAATG 1549
consensus_7856#2 ------------------------------------------------------------
consensus_7856#1 ------------------------------------------------------------
consensus_7856#0 ATATATTATATTCCGATAGTAAATAATAAAATT 1582
consensus_7856#2 ---------------------------------
consensus_7856#1 ---------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||