cluster # 7860

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Anopheles gambiae
cluster # 7860 cluster # 7860 Sequences # 8 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7860#0 length = 811 sequences # 7

consensus_7860#1 length = 682 sequences # 1

consensusID : consensus_7860#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 811
fasta sequence

                              [CCGCCCACGCGTCCG----CTGCCCGCGACTAGTCCACCTCGACTGCACATCAA-GCGCGATGGCACAGTGCCAGTGAAAGGGAAATCGAGTCGAGTACTCCCGTGCGGCGGTGAACAACAACATATCGAACCCGTACTTCCGTAGTGCAATACAATCCCCTTTGCTGCACAAGGGGTTGGTAGCAAACGTGTAATGGTGGTGGTGCGTGTGGCAACTTCCGGCTCCTACCATCGGC-CACACATCGGATCGTCCGCTGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTCGGCACCGGCGGTGCGGTCGGACTGCGGGAACGGCTGAGCATCTACGAGCAGAAGCGCTACCAGCGCCAGATCGAGGAAAGTGAAAACAGCGGCCTGTACGATGCGACCGATTCCGTGATTTCGCTCACGGCGGCCAATCTGAAGCAGCGTGTGTTTAACCAACCGCACGCATCGCTGGTCGAGTTTTACAACTCGTACT-GCGGG-TTTTGTCGCCGGTTCGCACCGATCTGGAAGCAGCTCGCCTCGGACATACTCGGCTGGCAGAAGCTGGTCCACGTAACCGCGCTGGACTGCTCGCGGGACGAAAACAATGCAATCTGCC-GGGAGTTCGAGGTGATGGCCTATCCCGACGAATCCGGTTCTTTTCACCGTATTACGCAGATGGCGAGCAGAAGATAGGAGAACCAGTGAAAGAGCACGATGAGCAGCGCATCATTGACCGGTTGGTCGAGTACATGCAGCGGGTCGAGAACAGACCAACCAACTGGCCCAACCTAACCGCCATCAATCG]

[+] EMBL BM579427             [CCGCCCACGCGTCCGGTGACTGCCCGCGACTAGTCCACCTCGACTGCACATCAA GCGCGATGGCACAGTGCCAGTGAAAGGGAAATCGAGTCGAGTACTCCCGTGCGGCGGTGAACAACAACATATCGAACCCGTACTTCCGTAGTGCAATACAATCCCCTTTGCTGCACAAGGGGTTGGTAGCAAACGTGTAATGGTGGTGGTGCGTGTGGCAACTTCCGGCTCCTACCATCGGC CACACATCGGATCGTCCGCTGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTCGGCACCGGCGGTGCGGTCGGACTGCGGGAACGGCTGAGCATCTACGAGCAGAAGCGCTACCAGCGCCAGATCGAGGAAAGTGAAAACAGCGGCCTGTACGATGCGACCGATTCCGTGATTTCGCTCACGGCGGCCAATCTGAAGCAGCGTGTGTTTAACCAACCGCACGCATCGCTGGTCGAGTTTTACAACTCGTACT GCGGG TTTTGTCGCCGGTTCGCACCGATCTGGAAGCAGCTCGCCTCGGACATACTCGGCTGGCAGAAGCTGGTCCACGTAACCGCGCTGGACTGCTCGCG                                                                                                                                                                                                                     ]
[+] EMBL BM656259             [CCGCCCACGCGTCCG    CTGCCCGCGACTAGTCCACCTCGACTGCACATCAA GCGCGATGGCACAGTGCCAGTGAAAGGGAAATCGAGTCGAGTACTCCCGTGCGGCGGTGAACAACAACATATCGAACCCGTACTTCCGTAGTGCAATACAATCCCCTTTGCTGCACAAGGGGTTGGTAGCAAACGTGTAATGGTGGTGGTGCGTGTGGCAACTTCCGGCTCCTACCATCGGC CACACATCGGATCGTCCGCTGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTCGGCACCGGCGGTGCGGTCGGACTGCGGGAACGGCTGAGCATCTACGAGCAGAAGCGCTACCAGCGCCAGATCGAGGAAAGTGAAAACAGCGGCCTGTACGATGCGACCGATTCCGTGATTTCGCTCACGGCGGCCAATCTGAAGCAGCGTGTGTTTAACCAACCGCACGCATCGCTGGTCGAGTTTTACAACTCGTACTGGCGGGTTTTTGTCGCCGGTTCGCACCGATCTGGAAGCAGCTCGCCTCGGACATACTCGGCTGGCAGAAGCTGGTCCACGTAACCGCGCTGGACTGCTCGCGGGACGAAAACAATGCATTCTGCCGGGGAGTTCGAGGTGATGGCCTATCCCGACGAATCCGGTTCTTTTCACCGTATTACGCAGATGGCG                                                                                                                            ]
[+] EMBL BM589018             [CCGCCCACGCGTCCG    CTGCCCGCGACTAGTCCACCTCGACTGCACATCAA GCGCGATGGCACAGTGCCAGTGAAAGGGAAATCGAGTCGAGTACTCCCGTGCGGCGGTGAACAACAACATATCGAACCCGTACTTCCGTAGTGCAATACAATCCCCTTTGCTGCACAAGGGGTTGGTAGCAAACGTGTAATGGTGGTGGTGCGTGTGGCAACTTCCGGCTCCTACCATCGGC CACACATCGGATCGTCCGCTGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTCGGCACCGGCGGTGCGGTCGGACTGCGGGAACGGCTGAGCATCTACGAGCAGAAGCGCTACCAGCGCCAGATCGAGGAAAGTGAAAACAGCGGCCTGTACGATGCGACCGATTCCGTGATTTCGCTCACGGCGGCCAATCTGAAGCAGCGTGTGTTTAACCAACCGCACGCATCGCTGGTCGAGTTTTACAACTCGTACT GCGGG TTTTGTCGCCGGTTCGCACCGATCTGGAAGCAGCTCGCCTCGGACATACTCGGCTGGCAGAAGCTGGTCCACGTAACCGCGCTGGACTGCTCGCGGGACGAAAACAATGCAATCTGCC GGGA                                                                                                                                                                                         ]
[+] EMBL BM581086             [        ccggtga    CTGCCCGCGACTAGTCCACCTCGACTGCACATCAA GCGCGATGGCACAGTGCCAGTGAAAGGGAAATCGAGTCGAGTACTCCCGTGCGGCGGTGAACAACAACATATCGAACCCGTACTTCCGTAGTGCAATACAATCCCCTTTGCTGCACAAGGGGTTGGTAGCAAACGTGTAATGGTGGTGGTGCGTGTGGCAACTTCCGGCTCCTACCATCGGC CACACATCGGATCGTCCGCTGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTCGGCACCGGCGGTGCGGTCGGACTGCGGGAACGGCTGAGCATCTACGAGCAGAAGCGCTACCAGCGCCAGATCGAGGAAAGTGAAAACAGCGGCCTGTACGATGCGACCGATTCCGTGATTTCGCTCACGGCGGCCAATCTGAAGCAGCGTGTGTTTAACCAACCGCACGCATCGCTGGTCGAGTTTTACAACTCGTACT GCGGG TTTTGTCGCCGGTTCGCACCGATCTGGAAGCAGCTCGCCTCGGACATACTCGGCTGGCAGAAGCTGGTCCACGTAACCGCGCT                                                                                                                                                                                                                                 ]
[+] EMBL BM649162             [                                                 ATCAACGCGCGATGGCACAGTGCCAGTGAAAGGGAAATCGAGTCGAGTACTCCCGTGCGGCGGTGAACAACAACATATCGAACCCGTACTTCCGTAGTGCAATACAATCCCCTTTGCTGCACAAGGGGTTGGTAGCAAACGTGTAATGGTGGTGGTGCGTGTGGCAACTTCCGGCTCCTACCATCGGC CACACATCGGATCGTCCGCTGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTCGGCACCGGCGGTGCGGTCGGACTGCGGGAACGGCTGAGCATCTACGAGCAGAAGCGCTACCAGCGCCAGATCGAGGAAAGTGAAAACAGCGGCCTGTACGATGCGACCGATTCCGTGATTTCGCTCACGGCGGCCAATCTGAAGCAGCGTGTGTTTAACCAACCGCACGCATCGCTGGTCGAGTTTTACAACTCGTACT GCGGG TTTTGTCGCCGGTTCGCACCGATCTGGAAGCAGCTCGCCTCGGACATACTCGGCTGGCAGAAGCTGGTCCACGTAACCGCGCTGGACTGCTCGCGGGACGAAAACAATGCAATCTGCC GGGAGTT                                                                                                                                                                                      ]
[+] EMBL BM580915             [                                                                                                                 ccgCAACAACATATCGAACCCGTACTTCCGTAGTGCAATACAATCCCCTTTGCTGCACAAGGGGTTGGTAGCAAACGTGTAATGGTGGTGGTGCGTGTGGCAACTTCCGGCTCCTACCATCGGC CACACATCGGATCGTCCGCTGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTCGGCACCGGCGGTGCGGTCGGACTGCGGGAACGGCTGAGCATCTACGAGCAGAAGCGCTACCAGCGCCAGATCGAGGAAAGTGAAAACAGCGGCCTGTACGATGCGACCGATTCCGTGATTTCGCTCACGGCGGCCAATCTGAAGCAGCGTGTGTTTAACCAACCGCACGCATCGCTGGTCGAGTTTTACAACTCGTACT GCGGG TTTTGTCGCCGGTTCGCACCGATCTGGAAGCAGCTCGCCTCGGACATACTCGGCTGGCAGAAGCTGGTCCACGTAACCGCGCTGGACTGCTCGCGGGACGAAAACAATGCAATCTGCC GGGAGTTCGAGGTGATGGCCTAT CCGACG ATCCGGTTCTTTTCACCGTATTACGCAGATGGCGAGCAGAAGATAGGAGAACCAGTGAAAGAGCACGATGAGCAGCGCATCATTGACCGGTTGGTCGAGTACATGCAGCGGGTCGAGAACAGACCAACCAACTGGCCCAACCTAACCGCCATCAATCG]
[+] EMBL AL697557             [                                                                                                                           ATAT GAA CCGTACTTCGGTAGTGC ATACAATCCCCTTTGCTGCACAAGGGGTTGGTAGCAAACGTGTAATGGTGGTGGTGCGTGTGGCAACTTCCGGCT CTACCATCGGCACACAAATCGGATCGTCCGCTGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTCGGCACCGGCGGTGCGGTCGGACTGCGGGAACGGCTGAGCATCTACGAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]




>consensus_7860#0
CCGCCCACGCGTCCGCTGCCCGCGACTAGTCCACCTCGACTGCACATCAAGCGCGATGGC
ACAGTGCCAGTGAAAGGGAAATCGAGTCGAGTACTCCCGTGCGGCGGTGAACAACAACAT
ATCGAACCCGTACTTCCGTAGTGCAATACAATCCCCTTTGCTGCACAAGGGGTTGGTAGC
AAACGTGTAATGGTGGTGGTGCGTGTGGCAACTTCCGGCTCCTACCATCGGCCACACATC
GGATCGTCCGCTGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTC
GGCACCGGCGGTGCGGTCGGACTGCGGGAACGGCTGAGCATCTACGAGCAGAAGCGCTAC
CAGCGCCAGATCGAGGAAAGTGAAAACAGCGGCCTGTACGATGCGACCGATTCCGTGATT
TCGCTCACGGCGGCCAATCTGAAGCAGCGTGTGTTTAACCAACCGCACGCATCGCTGGTC
GAGTTTTACAACTCGTACTGCGGGTTTTGTCGCCGGTTCGCACCGATCTGGAAGCAGCTC
GCCTCGGACATACTCGGCTGGCAGAAGCTGGTCCACGTAACCGCGCTGGACTGCTCGCGG
GACGAAAACAATGCAATCTGCCGGGAGTTCGAGGTGATGGCCTATCCCGACGAATCCGGT
TCTTTTCACCGTATTACGCAGATGGCGAGCAGAAGATAGGAGAACCAGTGAAAGAGCACG
ATGAGCAGCGCATCATTGACCGGTTGGTCGAGTACATGCAGCGGGTCGAGAACAGACCAA
CCAACTGGCCCAACCTAACCGCCATCAATCG

consensusID : consensus_7860#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 682
fasta sequence

                              [CCGTGCGTACGTAATTTGTTCGCCAACCAAATGGTTCGCGCTGCTGCCCCATTCCGAAACAGTGACTGCCCGCGACTAGTCCACCTCGACTGCACATCAAGCGCGATGGCACAGTGCCAGTGAAAGGGAAATCGAGTCGAGTACTCCCGTGCGGCGGTGAACAACAACATATCGAACCCGTACTTCCGCAGTGCAATACAATCCCCTTGCAGCACAAGGGGTTGGTAGCAAACGTGTAATGGTGGTGGTGCGTGTGGCAACTTCCGGCTCCTACCATCGGCCACACATCGGATCGTCCGCTGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTCGGCACCGGCGGTGCGGTCGGACTGCGGGAACGGCTGAGCATTTACGAGCAGAAGCGCTACCAGCGCCAGATCGAGGAAAGTGAAAACAACGGCCTGTACGATGCGACCGATTCCGTGATATCGCTCACGGCGGCCAATCTGAAGCAGCGGGTGTTTAACCAACCGCACGCATCGCTGGTCGAGTTTTACAACTCGTACTGCGGGTTTTGTCGCCGGTTCGCACCGATCTGGAAGCAGCTCGCCTCGGACATACTCGGCTGGCAGAAGCTGGTCCACGTAACCGCGCTGGACTGCTCGCGGGACGAAAACAATGCAATCTGCCGGGAGTTCGAG]

[+] EMBL BM587448             [CCGTGCGTACGTAATTTGTTCGCCAACCAAATGGTTCGCGCTGCTGCCCCATTCCGAAACAGTGACTGCCCGCGACTAGTCCACCTCGACTGCACATCAAGCGCGATGGCACAGTGCCAGTGAAAGGGAAATCGAGTCGAGTACTCCCGTGCGGCGGTGAACAACAACATATCGAACCCGTACTTCCGCAGTGCAATACAATCCCCTTGCAGCACAAGGGGTTGGTAGCAAACGTGTAATGGTGGTGGTGCGTGTGGCAACTTCCGGCTCCTACCATCGGCCACACATCGGATCGTCCGCTGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTCGGCACCGGCGGTGCGGTCGGACTGCGGGAACGGCTGAGCATTTACGAGCAGAAGCGCTACCAGCGCCAGATCGAGGAAAGTGAAAACAACGGCCTGTACGATGCGACCGATTCCGTGATATCGCTCACGGCGGCCAATCTGAAGCAGCGGGTGTTTAACCAACCGCACGCATCGCTGGTCGAGTTTTACAACTCGTACTGCGGGTTTTGTCGCCGGTTCGCACCGATCTGGAAGCAGCTCGCCTCGGACATACTCGGCTGGCAGAAGCTGGTCCACGTAACCGCGCTGGACTGCTCGCGGGACGAAAACAATGCAATCTGCCGGGAGTTCGAG]




>consensus_7860#1
CCGTGCGTACGTAATTTGTTCGCCAACCAAATGGTTCGCGCTGCTGCCCCATTCCGAAAC
AGTGACTGCCCGCGACTAGTCCACCTCGACTGCACATCAAGCGCGATGGCACAGTGCCAG
TGAAAGGGAAATCGAGTCGAGTACTCCCGTGCGGCGGTGAACAACAACATATCGAACCCG
TACTTCCGCAGTGCAATACAATCCCCTTGCAGCACAAGGGGTTGGTAGCAAACGTGTAAT
GGTGGTGGTGCGTGTGGCAACTTCCGGCTCCTACCATCGGCCACACATCGGATCGTCCGC
TGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTCGGCACCGGCGG
TGCGGTCGGACTGCGGGAACGGCTGAGCATTTACGAGCAGAAGCGCTACCAGCGCCAGAT
CGAGGAAAGTGAAAACAACGGCCTGTACGATGCGACCGATTCCGTGATATCGCTCACGGC
GGCCAATCTGAAGCAGCGGGTGTTTAACCAACCGCACGCATCGCTGGTCGAGTTTTACAA
CTCGTACTGCGGGTTTTGTCGCCGGTTCGCACCGATCTGGAAGCAGCTCGCCTCGGACAT
ACTCGGCTGGCAGAAGCTGGTCCACGTAACCGCGCTGGACTGCTCGCGGGACGAAAACAA
TGCAATCTGCCGGGAGTTCGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7860#0      --------------------------------------------------CCGCCCACGC 10
consensus_7860#1      CCGTGCGTACGTAATTTGTTCGCCAACCAAATGGTTCGCGCTGCTGCCCCATTCCGAAAC 60
                                                                           ** *  *

consensus_7860#0      GTCCGCTGCCCGCGACTAGTCCACCTCGACTGCACATCAAGCGCGATGGCACAGTGCCAG 70
consensus_7860#1      AGTGACTGCCCGCGACTAGTCCACCTCGACTGCACATCAAGCGCGATGGCACAGTGCCAG 120
                           *******************************************************

consensus_7860#0      TGAAAGGGAAATCGAGTCGAGTACTCCCGTGCGGCGGTGAACAACAACATATCGAACCCG 130
consensus_7860#1      TGAAAGGGAAATCGAGTCGAGTACTCCCGTGCGGCGGTGAACAACAACATATCGAACCCG 180
                      ************************************************************

consensus_7860#0      TACTTCCGTAGTGCAATACAATCCCCTTTGCTGCACAAGGGGTTGGTAGCAAACGTGTAA 190
consensus_7860#1      TACTTCCGCAGTGCAATACAATCCCCTT-GCAGCACAAGGGGTTGGTAGCAAACGTGTAA 239
                      ******** ******************* ** ****************************

consensus_7860#0      TGGTGGTGGTGCGTGTGGCAACTTCCGGCTCCTACCATCGGCCACACATCGGATCGTCCG 250
consensus_7860#1      TGGTGGTGGTGCGTGTGGCAACTTCCGGCTCCTACCATCGGCCACACATCGGATCGTCCG 299
                      ************************************************************

consensus_7860#0      CTGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTCGGCACCGGCG 310
consensus_7860#1      CTGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTCGGCACCGGCG 359
                      ************************************************************

consensus_7860#0      GTGCGGTCGGACTGCGGGAACGGCTGAGCATCTACGAGCAGAAGCGCTACCAGCGCCAGA 370
consensus_7860#1      GTGCGGTCGGACTGCGGGAACGGCTGAGCATTTACGAGCAGAAGCGCTACCAGCGCCAGA 419
                      ******************************* ****************************

consensus_7860#0      TCGAGGAAAGTGAAAACAGCGGCCTGTACGATGCGACCGATTCCGTGATTTCGCTCACGG 430
consensus_7860#1      TCGAGGAAAGTGAAAACAACGGCCTGTACGATGCGACCGATTCCGTGATATCGCTCACGG 479
                      ****************** ****************************** **********

consensus_7860#0      CGGCCAATCTGAAGCAGCGTGTGTTTAACCAACCGCACGCATCGCTGGTCGAGTTTTACA 490
consensus_7860#1      CGGCCAATCTGAAGCAGCGGGTGTTTAACCAACCGCACGCATCGCTGGTCGAGTTTTACA 539
                      ******************* ****************************************

consensus_7860#0      ACTCGTACTGCGGGTTTTGTCGCCGGTTCGCACCGATCTGGAAGCAGCTCGCCTCGGACA 550
consensus_7860#1      ACTCGTACTGCGGGTTTTGTCGCCGGTTCGCACCGATCTGGAAGCAGCTCGCCTCGGACA 599
                      ************************************************************

consensus_7860#0      TACTCGGCTGGCAGAAGCTGGTCCACGTAACCGCGCTGGACTGCTCGCGGGACGAAAACA 610
consensus_7860#1      TACTCGGCTGGCAGAAGCTGGTCCACGTAACCGCGCTGGACTGCTCGCGGGACGAAAACA 659
                      ************************************************************

consensus_7860#0      ATGCAATCTGCCGGGAGTTCGAGGTGATGGCCTATCCCGACGAATCCGGTTCTTTTCACC 670
consensus_7860#1      ATGCAATCTGCCGGGAGTTCGAG------------------------------------- 682
                      ***********************                                     

consensus_7860#0      GTATTACGCAGATGGCGAGCAGAAGATAGGAGAACCAGTGAAAGAGCACGATGAGCAGCG 730
consensus_7860#1      ------------------------------------------------------------
                                                                                  

consensus_7860#0      CATCATTGACCGGTTGGTCGAGTACATGCAGCGGGTCGAGAACAGACCAACCAACTGGCC 790
consensus_7860#1      ------------------------------------------------------------
                                                                                  

consensus_7860#0      CAACCTAACCGCCATCAATCG 811
consensus_7860#1      ---------------------