These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7860#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 811 fasta sequence [CCGCCCACGCGTCCG----CTGCCCGCGACTAGTCCACCTCGACTGCACATCAA-GCGCGATGGCACAGTGCCAGTGAAAGGGAAATCGAGTCGAGTACTCCCGTGCGGCGGTGAACAACAACATATCGAACCCGTACTTCCGTAGTGCAATACAATCCCCTTTGCTGCACAAGGGGTTGGTAGCAAACGTGTAATGGTGGTGGTGCGTGTGGCAACTTCCGGCTCCTACCATCGGC-CACACATCGGATCGTCCGCTGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTCGGCACCGGCGGTGCGGTCGGACTGCGGGAACGGCTGAGCATCTACGAGCAGAAGCGCTACCAGCGCCAGATCGAGGAAAGTGAAAACAGCGGCCTGTACGATGCGACCGATTCCGTGATTTCGCTCACGGCGGCCAATCTGAAGCAGCGTGTGTTTAACCAACCGCACGCATCGCTGGTCGAGTTTTACAACTCGTACT-GCGGG-TTTTGTCGCCGGTTCGCACCGATCTGGAAGCAGCTCGCCTCGGACATACTCGGCTGGCAGAAGCTGGTCCACGTAACCGCGCTGGACTGCTCGCGGGACGAAAACAATGCAATCTGCC-GGGAGTTCGAGGTGATGGCCTATCCCGACGAATCCGGTTCTTTTCACCGTATTACGCAGATGGCGAGCAGAAGATAGGAGAACCAGTGAAAGAGCACGATGAGCAGCGCATCATTGACCGGTTGGTCGAGTACATGCAGCGGGTCGAGAACAGACCAACCAACTGGCCCAACCTAACCGCCATCAATCG] [+] EMBL BM579427 [CCGCCCACGCGTCCGGTGACTGCCCGCGACTAGTCCACCTCGACTGCACATCAA GCGCGATGGCACAGTGCCAGTGAAAGGGAAATCGAGTCGAGTACTCCCGTGCGGCGGTGAACAACAACATATCGAACCCGTACTTCCGTAGTGCAATACAATCCCCTTTGCTGCACAAGGGGTTGGTAGCAAACGTGTAATGGTGGTGGTGCGTGTGGCAACTTCCGGCTCCTACCATCGGC CACACATCGGATCGTCCGCTGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTCGGCACCGGCGGTGCGGTCGGACTGCGGGAACGGCTGAGCATCTACGAGCAGAAGCGCTACCAGCGCCAGATCGAGGAAAGTGAAAACAGCGGCCTGTACGATGCGACCGATTCCGTGATTTCGCTCACGGCGGCCAATCTGAAGCAGCGTGTGTTTAACCAACCGCACGCATCGCTGGTCGAGTTTTACAACTCGTACT GCGGG TTTTGTCGCCGGTTCGCACCGATCTGGAAGCAGCTCGCCTCGGACATACTCGGCTGGCAGAAGCTGGTCCACGTAACCGCGCTGGACTGCTCGCG ] [+] EMBL BM656259 [CCGCCCACGCGTCCG CTGCCCGCGACTAGTCCACCTCGACTGCACATCAA GCGCGATGGCACAGTGCCAGTGAAAGGGAAATCGAGTCGAGTACTCCCGTGCGGCGGTGAACAACAACATATCGAACCCGTACTTCCGTAGTGCAATACAATCCCCTTTGCTGCACAAGGGGTTGGTAGCAAACGTGTAATGGTGGTGGTGCGTGTGGCAACTTCCGGCTCCTACCATCGGC CACACATCGGATCGTCCGCTGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTCGGCACCGGCGGTGCGGTCGGACTGCGGGAACGGCTGAGCATCTACGAGCAGAAGCGCTACCAGCGCCAGATCGAGGAAAGTGAAAACAGCGGCCTGTACGATGCGACCGATTCCGTGATTTCGCTCACGGCGGCCAATCTGAAGCAGCGTGTGTTTAACCAACCGCACGCATCGCTGGTCGAGTTTTACAACTCGTACTGGCGGGTTTTTGTCGCCGGTTCGCACCGATCTGGAAGCAGCTCGCCTCGGACATACTCGGCTGGCAGAAGCTGGTCCACGTAACCGCGCTGGACTGCTCGCGGGACGAAAACAATGCATTCTGCCGGGGAGTTCGAGGTGATGGCCTATCCCGACGAATCCGGTTCTTTTCACCGTATTACGCAGATGGCG ] [+] EMBL BM589018 [CCGCCCACGCGTCCG CTGCCCGCGACTAGTCCACCTCGACTGCACATCAA GCGCGATGGCACAGTGCCAGTGAAAGGGAAATCGAGTCGAGTACTCCCGTGCGGCGGTGAACAACAACATATCGAACCCGTACTTCCGTAGTGCAATACAATCCCCTTTGCTGCACAAGGGGTTGGTAGCAAACGTGTAATGGTGGTGGTGCGTGTGGCAACTTCCGGCTCCTACCATCGGC CACACATCGGATCGTCCGCTGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTCGGCACCGGCGGTGCGGTCGGACTGCGGGAACGGCTGAGCATCTACGAGCAGAAGCGCTACCAGCGCCAGATCGAGGAAAGTGAAAACAGCGGCCTGTACGATGCGACCGATTCCGTGATTTCGCTCACGGCGGCCAATCTGAAGCAGCGTGTGTTTAACCAACCGCACGCATCGCTGGTCGAGTTTTACAACTCGTACT GCGGG TTTTGTCGCCGGTTCGCACCGATCTGGAAGCAGCTCGCCTCGGACATACTCGGCTGGCAGAAGCTGGTCCACGTAACCGCGCTGGACTGCTCGCGGGACGAAAACAATGCAATCTGCC GGGA ] [+] EMBL BM581086 [ ccggtga CTGCCCGCGACTAGTCCACCTCGACTGCACATCAA GCGCGATGGCACAGTGCCAGTGAAAGGGAAATCGAGTCGAGTACTCCCGTGCGGCGGTGAACAACAACATATCGAACCCGTACTTCCGTAGTGCAATACAATCCCCTTTGCTGCACAAGGGGTTGGTAGCAAACGTGTAATGGTGGTGGTGCGTGTGGCAACTTCCGGCTCCTACCATCGGC CACACATCGGATCGTCCGCTGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTCGGCACCGGCGGTGCGGTCGGACTGCGGGAACGGCTGAGCATCTACGAGCAGAAGCGCTACCAGCGCCAGATCGAGGAAAGTGAAAACAGCGGCCTGTACGATGCGACCGATTCCGTGATTTCGCTCACGGCGGCCAATCTGAAGCAGCGTGTGTTTAACCAACCGCACGCATCGCTGGTCGAGTTTTACAACTCGTACT GCGGG TTTTGTCGCCGGTTCGCACCGATCTGGAAGCAGCTCGCCTCGGACATACTCGGCTGGCAGAAGCTGGTCCACGTAACCGCGCT ] [+] EMBL BM649162 [ ATCAACGCGCGATGGCACAGTGCCAGTGAAAGGGAAATCGAGTCGAGTACTCCCGTGCGGCGGTGAACAACAACATATCGAACCCGTACTTCCGTAGTGCAATACAATCCCCTTTGCTGCACAAGGGGTTGGTAGCAAACGTGTAATGGTGGTGGTGCGTGTGGCAACTTCCGGCTCCTACCATCGGC CACACATCGGATCGTCCGCTGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTCGGCACCGGCGGTGCGGTCGGACTGCGGGAACGGCTGAGCATCTACGAGCAGAAGCGCTACCAGCGCCAGATCGAGGAAAGTGAAAACAGCGGCCTGTACGATGCGACCGATTCCGTGATTTCGCTCACGGCGGCCAATCTGAAGCAGCGTGTGTTTAACCAACCGCACGCATCGCTGGTCGAGTTTTACAACTCGTACT GCGGG TTTTGTCGCCGGTTCGCACCGATCTGGAAGCAGCTCGCCTCGGACATACTCGGCTGGCAGAAGCTGGTCCACGTAACCGCGCTGGACTGCTCGCGGGACGAAAACAATGCAATCTGCC GGGAGTT ] [+] EMBL BM580915 [ ccgCAACAACATATCGAACCCGTACTTCCGTAGTGCAATACAATCCCCTTTGCTGCACAAGGGGTTGGTAGCAAACGTGTAATGGTGGTGGTGCGTGTGGCAACTTCCGGCTCCTACCATCGGC CACACATCGGATCGTCCGCTGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTCGGCACCGGCGGTGCGGTCGGACTGCGGGAACGGCTGAGCATCTACGAGCAGAAGCGCTACCAGCGCCAGATCGAGGAAAGTGAAAACAGCGGCCTGTACGATGCGACCGATTCCGTGATTTCGCTCACGGCGGCCAATCTGAAGCAGCGTGTGTTTAACCAACCGCACGCATCGCTGGTCGAGTTTTACAACTCGTACT GCGGG TTTTGTCGCCGGTTCGCACCGATCTGGAAGCAGCTCGCCTCGGACATACTCGGCTGGCAGAAGCTGGTCCACGTAACCGCGCTGGACTGCTCGCGGGACGAAAACAATGCAATCTGCC GGGAGTTCGAGGTGATGGCCTAT CCGACG ATCCGGTTCTTTTCACCGTATTACGCAGATGGCGAGCAGAAGATAGGAGAACCAGTGAAAGAGCACGATGAGCAGCGCATCATTGACCGGTTGGTCGAGTACATGCAGCGGGTCGAGAACAGACCAACCAACTGGCCCAACCTAACCGCCATCAATCG] [+] EMBL AL697557 [ ATAT GAA CCGTACTTCGGTAGTGC ATACAATCCCCTTTGCTGCACAAGGGGTTGGTAGCAAACGTGTAATGGTGGTGGTGCGTGTGGCAACTTCCGGCT CTACCATCGGCACACAAATCGGATCGTCCGCTGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTCGGCACCGGCGGTGCGGTCGGACTGCGGGAACGGCTGAGCATCTACGAGC ] consensusID : consensus_7860#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 682 fasta sequence [CCGTGCGTACGTAATTTGTTCGCCAACCAAATGGTTCGCGCTGCTGCCCCATTCCGAAACAGTGACTGCCCGCGACTAGTCCACCTCGACTGCACATCAAGCGCGATGGCACAGTGCCAGTGAAAGGGAAATCGAGTCGAGTACTCCCGTGCGGCGGTGAACAACAACATATCGAACCCGTACTTCCGCAGTGCAATACAATCCCCTTGCAGCACAAGGGGTTGGTAGCAAACGTGTAATGGTGGTGGTGCGTGTGGCAACTTCCGGCTCCTACCATCGGCCACACATCGGATCGTCCGCTGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTCGGCACCGGCGGTGCGGTCGGACTGCGGGAACGGCTGAGCATTTACGAGCAGAAGCGCTACCAGCGCCAGATCGAGGAAAGTGAAAACAACGGCCTGTACGATGCGACCGATTCCGTGATATCGCTCACGGCGGCCAATCTGAAGCAGCGGGTGTTTAACCAACCGCACGCATCGCTGGTCGAGTTTTACAACTCGTACTGCGGGTTTTGTCGCCGGTTCGCACCGATCTGGAAGCAGCTCGCCTCGGACATACTCGGCTGGCAGAAGCTGGTCCACGTAACCGCGCTGGACTGCTCGCGGGACGAAAACAATGCAATCTGCCGGGAGTTCGAG] [+] EMBL BM587448 [CCGTGCGTACGTAATTTGTTCGCCAACCAAATGGTTCGCGCTGCTGCCCCATTCCGAAACAGTGACTGCCCGCGACTAGTCCACCTCGACTGCACATCAAGCGCGATGGCACAGTGCCAGTGAAAGGGAAATCGAGTCGAGTACTCCCGTGCGGCGGTGAACAACAACATATCGAACCCGTACTTCCGCAGTGCAATACAATCCCCTTGCAGCACAAGGGGTTGGTAGCAAACGTGTAATGGTGGTGGTGCGTGTGGCAACTTCCGGCTCCTACCATCGGCCACACATCGGATCGTCCGCTGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTCGGCACCGGCGGTGCGGTCGGACTGCGGGAACGGCTGAGCATTTACGAGCAGAAGCGCTACCAGCGCCAGATCGAGGAAAGTGAAAACAACGGCCTGTACGATGCGACCGATTCCGTGATATCGCTCACGGCGGCCAATCTGAAGCAGCGGGTGTTTAACCAACCGCACGCATCGCTGGTCGAGTTTTACAACTCGTACTGCGGGTTTTGTCGCCGGTTCGCACCGATCTGGAAGCAGCTCGCCTCGGACATACTCGGCTGGCAGAAGCTGGTCCACGTAACCGCGCTGGACTGCTCGCGGGACGAAAACAATGCAATCTGCCGGGAGTTCGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7860#0 --------------------------------------------------CCGCCCACGC 10 consensus_7860#1 CCGTGCGTACGTAATTTGTTCGCCAACCAAATGGTTCGCGCTGCTGCCCCATTCCGAAAC 60 ** * * consensus_7860#0 GTCCGCTGCCCGCGACTAGTCCACCTCGACTGCACATCAAGCGCGATGGCACAGTGCCAG 70 consensus_7860#1 AGTGACTGCCCGCGACTAGTCCACCTCGACTGCACATCAAGCGCGATGGCACAGTGCCAG 120 ******************************************************* consensus_7860#0 TGAAAGGGAAATCGAGTCGAGTACTCCCGTGCGGCGGTGAACAACAACATATCGAACCCG 130 consensus_7860#1 TGAAAGGGAAATCGAGTCGAGTACTCCCGTGCGGCGGTGAACAACAACATATCGAACCCG 180 ************************************************************ consensus_7860#0 TACTTCCGTAGTGCAATACAATCCCCTTTGCTGCACAAGGGGTTGGTAGCAAACGTGTAA 190 consensus_7860#1 TACTTCCGCAGTGCAATACAATCCCCTT-GCAGCACAAGGGGTTGGTAGCAAACGTGTAA 239 ******** ******************* ** **************************** consensus_7860#0 TGGTGGTGGTGCGTGTGGCAACTTCCGGCTCCTACCATCGGCCACACATCGGATCGTCCG 250 consensus_7860#1 TGGTGGTGGTGCGTGTGGCAACTTCCGGCTCCTACCATCGGCCACACATCGGATCGTCCG 299 ************************************************************ consensus_7860#0 CTGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTCGGCACCGGCG 310 consensus_7860#1 CTGCGTGGCTGCTGCTGCTGCTGCTGCTCGCGGTGAGTACCGTCGACCTCGGCACCGGCG 359 ************************************************************ consensus_7860#0 GTGCGGTCGGACTGCGGGAACGGCTGAGCATCTACGAGCAGAAGCGCTACCAGCGCCAGA 370 consensus_7860#1 GTGCGGTCGGACTGCGGGAACGGCTGAGCATTTACGAGCAGAAGCGCTACCAGCGCCAGA 419 ******************************* **************************** consensus_7860#0 TCGAGGAAAGTGAAAACAGCGGCCTGTACGATGCGACCGATTCCGTGATTTCGCTCACGG 430 consensus_7860#1 TCGAGGAAAGTGAAAACAACGGCCTGTACGATGCGACCGATTCCGTGATATCGCTCACGG 479 ****************** ****************************** ********** consensus_7860#0 CGGCCAATCTGAAGCAGCGTGTGTTTAACCAACCGCACGCATCGCTGGTCGAGTTTTACA 490 consensus_7860#1 CGGCCAATCTGAAGCAGCGGGTGTTTAACCAACCGCACGCATCGCTGGTCGAGTTTTACA 539 ******************* **************************************** consensus_7860#0 ACTCGTACTGCGGGTTTTGTCGCCGGTTCGCACCGATCTGGAAGCAGCTCGCCTCGGACA 550 consensus_7860#1 ACTCGTACTGCGGGTTTTGTCGCCGGTTCGCACCGATCTGGAAGCAGCTCGCCTCGGACA 599 ************************************************************ consensus_7860#0 TACTCGGCTGGCAGAAGCTGGTCCACGTAACCGCGCTGGACTGCTCGCGGGACGAAAACA 610 consensus_7860#1 TACTCGGCTGGCAGAAGCTGGTCCACGTAACCGCGCTGGACTGCTCGCGGGACGAAAACA 659 ************************************************************ consensus_7860#0 ATGCAATCTGCCGGGAGTTCGAGGTGATGGCCTATCCCGACGAATCCGGTTCTTTTCACC 670 consensus_7860#1 ATGCAATCTGCCGGGAGTTCGAG------------------------------------- 682 *********************** consensus_7860#0 GTATTACGCAGATGGCGAGCAGAAGATAGGAGAACCAGTGAAAGAGCACGATGAGCAGCG 730 consensus_7860#1 ------------------------------------------------------------ consensus_7860#0 CATCATTGACCGGTTGGTCGAGTACATGCAGCGGGTCGAGAACAGACCAACCAACTGGCC 790 consensus_7860#1 ------------------------------------------------------------ consensus_7860#0 CAACCTAACCGCCATCAATCG 811 consensus_7860#1 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||