These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7863#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 643 fasta sequence [GGGTATTTCTGCAAGGAGTGAATCCGCGGCTGCTGGCGAATGATAAGATAAAACTGCGCCACTTGAGAGTGAGAGTTCGTGCGAGAAGGAAGTGCGCGGTTTTTGCATCTTTGCTGTGGGACTTCTCCGATCGAGAGTGCTAGTTGTACTAGAGCTTGGGGCTTTAGATACACGTTTATCAACGTGACACGTTTGGAATAGATGCTT-GATCTAGTAGCAATGGGTACTACCCTGAGGTGGATTTGTGTGATTGGATTGGTGGTGTGCGTGAGTGCCGGTGTTGTGGTCGATTATTATGAGGATGAGGGAAGTGCAAACGGACCGCCGACAACTTCGATCGTACCACAACTGATAATTGGAATGCGAGCATTGTTTGACGCTCCGATCGTGTGCCCGGATGGAACCGTACTGGATCACAAGGGTGTATGCCGACGACCGATGGGGAGATGAAGTTCAAATTTACAGTTCCCTAAATCAACCCAACAATGTATCGCAAAGTCGATCTTCACAATCACTATGAATATATTCTAAATGTTTGTTTAACTACAACACCTTACGCCAAAGTGATGCAATAAAGCTTAACCTACTGTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCCGGGGGG] [+] EMBL CNS092OB [GGGTATTTCTGCAAGTAGTGAATCCGCGGCTGCTGGCGAATGATAAGATAAAACTGCGCCACTTGAGAGTGAGAGTTCGTGCGAGAAGGAAGTGCGCGGTTTTTGCATCTTTGCTGTGGGACTTCTCCGATCGAGAGTGCTAGTTGTACTAGAGCTTGGGGCTTTAGATACACGTTTATCAACGTGACACGTTTGGAATAGATGCTT GATCTAGTAGCAATGGGTACTACCCTGAGGTGGATTTGTGTGATTGGATTGGTGGTTTGCGTGAGTGCCGGTGTTGTGGTCGATTATTATGAGGATGAGGGAAGTGCAAACGGACCGCCGACAACTTCGATCGTACCACAACTGATAATTGGAATGCGAGCATTGTTTGACGCTCCGATCGTGTACACGGATGGAACCGTACTGGATCACAAGGGTGTATGCCGACGACCGATGGGGAGATGAAGTACAAATTTACAGTTCCCTAAATCAGCCCAACAATGTATCGCAAAGTCGATCTTCACAATCACTATGAATATATTCTAAATGTTTGTTTAACTACAACACCTTACGCCAAAGTGATGCAATAAAGCTTAACCTACTGTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCCGGGGGG] [+] EMBL BM575933 [ ccGAGTGAATCCGCGGCTGCTGGCGAATGATAAGATAAAACTGCGCCACTTGAGAGTGAGAGTTCGTGCGAGAAGGAAGTGTGCGGTTTTTGCATCTTTGCTGTGGGACTTCTTCGATCGAGAGTGCTAGTTGTACTAGAGCTTGGGGCTTTAGATACACGTTTATCAACGTGACACGGTTGGAATAGATGCTT GATCTAGTAGCAATGGGTACTACCCTGCGGTGGATTTGTGTGATTGGATTGGTGGTGTGCGTGAGTGCCGGTGTTGTGGTCGATTATTATGAGGATGAGGGAAGTGCAAACGGACCGCCGACAACTTCGATCGTACCACAACTGATAATTGGAATGCGAGCATTGTTTGACGCTCCGATCGTGTGCCCGGATGGAACCGTACTGGATCACAAGGGTGTATGCCGACGACCGATGGGGAGATGAAGTTCAAATTTACAGTTCCCTAAATCAACCCAACAATGTATCGCAAAGTCGATCTTCACAATCACTATGAATATATTCTAAATGTTTGTTTAACTACAACACCTTACGCC ] [+] EMBL BM621584 [ ccGTGAATCCGCGGCTGCTGGCGAATGATAAGATAAAACTGCGCCACTTGAGAGTGAGAGTTCGTGCGAGAAGGAAGTGCGCGGTTTTTGCATCTTTGCTGTGGGACTTCTCCGATCGAGAGTGCTAGTTGTACTAGAGCTTGGGGCTTTAGATACACGTTTATCAACGTGACACGTTTGGAATAGATGCTTGGATCTAGTAACCATGGGTACTACCCTGAGGg ] [+] EMBL BM657063 [ ccgGTTCGTGCGAGAAGGAAGTGTGCGGTTTTTGCATCTTTGCTGTGGGACTTCTTCGATCGAGAGTGCTAGTTGTACTAGAGCTTGGGGCTTTAGATACACGTTTATCAACGTGACACGGTTGGAATAGATGCTT GATCTAGTAGCAATGGGTACTACCCTGCGGTGGATTTGTGTGATTGGATTGGTGGTGTGCGTGAGTGCCGGTGTTGTGGTCGATTATTATGAGGATGAGGGAAGTGCAAACGGACCGCCGACAACTTCGATCGTACCACAACTGATAATTGGAATGCGAGCATTGTTTGACGCTCCGATCGTGTGCCCGGATGGAACCGTACTGGATCACAAGGGTGTATGCCGACGACCGATGGGGAGATGAAGTTCAAATTTACAGTTCCCTAAATCAACCCAACAATGTATCGCAAAGTCGATCTTCACAATCACTATGAATATATTCTAAATGTTTGTTTAACTACAACACCTTACGCCAAAGTGATGCAATAAAGCTTAACCTACTATCATCAAttg ] [+] EMBL BM612186 [ ccgTCGTGCGAGAAGGAAGTGCGCGGTTTTTGCATCTTTGCTGTGGGACTTCTCCGATCGAGAGTGCTAGTTGTACTAGAGCTTGGGGCTTTAGATACACGTTTATCAACGTGACACGTTTGGAATAGATGCTT GATCTAGTAGCAATGGGTACTACCCTGAGGTGG ] consensusID : consensus_7863#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [CCGCCCACGCGTCCGCTCAACACGTACGGCAGTGTGGCTGTGCCTTGCACTGCTCGCGATCACTACTGCACCGTCGCCCGTTTTATCCGACGAAGGTGACGAGCAGGAGCAGGAAGCGCACACAACGCAGGAAGCGCAGGTGGCGCATGAAGAGCAAGCTACCGCACCAACCCCGGAAGCCAATGGGGAAGAAGGTGTAGGTGAAGGTGAAGCAACCGATACGGATGGGGAAGAAGCGGCCGAAACGGACGGAGCGAACCCGGGCGGAATGTTCGTGATGCAGCCGATCAACATACTGCTCGCACCGACCGCCTGCAAGCCGGGCTATCGTGTCGATCATAAGGGCAAGTGTCGGCCCACACTGTGAGCGAGCATTGTTTGACGCTCCGATCGTGTGCCCGGATGGAACCGTACTGGATCACAAGGGTGTATGCCGACGACCGATGGGGAGATGAAGTTCAAATTTACAGTTCCCTAAATCAGCCCAACAATGTATCGCAAAGTCGATCTTCACAATCACTATGAATATATTCTAAATGTTTGTTTAACTACAACACCTTACGCCAAAGTGATGCAATAAAGCTTAACCTACTGTCATCAATTG] [+] EMBL BM604660 [CCGCCCACGCGTCCGCTCAACACGTACGGCAGTGTGGCTGTGCCTTGCACTGCTCGCGATCACTACTGCACCGTCGCCCGTTTTATCCGACGAAGGTGACGAGCAGGAGCAGGAAGCGCACACAACGCAGGAAGCGCAGGTGGCGCATGAAGAGCAAGCTACCGCACCAACCCCGGAAGCCAATGGGGAAGAAGGTGTAGGTGAAGGTGAAGCAACCGATACGGATGGGGAAGAAGCGGCCGAAACGGACGGAGCGAACCCGGGCGGAATGTTCGTGATGCAGCCGATCAACATACTGCTCGCACCGACCGCCTGCAAGCCGGGCTATCGTGTCGATCATAAGGGCAAGTGTCGGCCCACACTGTGAGCGAGCATTGTTTGACGCTCCGATCGTGTGCCCGGATGGAACCGTACTGGATCACAAGGGTGTATGCCGACGACCGATGGGGAGATGAAGTTCAAATTTACAGTTCCCTAAATCAGCCCAACAATGTATCGCAAAGTCGATCTTCACAATCACTATGAATATATTCTAAATGTTTGTTTAACTACAACACCTTACGCCAAAGTGATGCAATAAAGCTTAACCTACTGTCATCAATTG] consensusID : consensus_7863#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence [CCGCCCACGCGTCCGCTTCTCCGATCGAGAGTGCTAGTTGTACTAGAGCTTGGGGCTTTAGATACACGTTTATCAACGTGACACGTTTGGAATAGATGCTTGATCTAGTAGCAATGGGTACTACCCTGAGGTGGATTTGTGTGATTGGATTGGTGGTTTGCGTGAGTGCCGGTGTTGTGGTCGATTATTATGAGGATGAGGGAAGTGCAAACGGACCGCCGACAACTTCGATCGTACCACAACTGATAATTGGAATGCGAGCATTGTTTGACGCTCCGATCGTGTGCCCGGATGGAACCGTACTGGATCACAAGGGTGTATGCCGACGACCGATGGGGAGATGAAGTTCAAATTTACAGTTCCCTAAATCAGCCCAACAATGTATCGCAAAGTCGATCTTCACAATCACTATGAATATATTCTAAATGTTTGTTTAACTATAACACCTTACGCCAAAGTGATGCAATAAAGCTTAACCTACTGTCATCAATTG] [+] EMBL BM620265 [CCGCCCACGCGTCCGCTTCTCCGATCGAGAGTGCTAGTTGTACTAGAGCTTGGGGCTTTAGATACACGTTTATCAACGTGACACGTTTGGAATAGATGCTTGATCTAGTAGCAATGGGTACTACCCTGAGGTGGATTTGTGTGATTGGATTGGTGGTTTGCGTGAGTGCCGGTGTTGTGGTCGATTATTATGAGGATGAGGGAAGTGCAAACGGACCGCCGACAACTTCGATCGTACCACAACTGATAATTGGAATGCGAGCATTGTTTGACGCTCCGATCGTGTGCCCGGATGGAACCGTACTGGATCACAAGGGTGTATGCCGACGACCGATGGGGAGATGAAGTTCAAATTTACAGTTCCCTAAATCAGCCCAACAATGTATCGCAAAGTCGATCTTCACAATCACTATGAATATATTCTAAATGTTTGTTTAACTATAACACCTTACGCCAAAGTGATGCAATAAAGCTTAACCTACTGTCATCAATTG] consensusID : consensus_7863#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [ATCGCCCGAGGGGGACTTCTCCGATCGAGAGTGCTAGTTGTACTAAGCTTGGGGCTTTAGATACACGTTTATCAACGTGACACGTTTGGAATAGATGCTTGATCTAGTAGCAATGGGTACTACCCTGAGGTGGATTTGTGTGATTGGATTGGTGGTTTGCGTGAGTGCCGGTGTTGTGGTCGATTATTATGAGGATGAGGGAAGTGCAAACGGACCGCCGACAACTTCGATCGTACCACAACTGATAATTGGAATGGTACGAATGATCGTTCTCGCGAATGCTGTCATATATGATCGTGCTGCGTTGCGAAACAGTGATGCAATATCAAAACAACAACACCAATATAGCAACCGTACTGAAAAGGCTTGATTGTAACTTATACGACCTATGTTTACTTTTCTACAGCGAGCATTGTTTGACGCTCCGATCGTGTGCCCNGATGGAACCGTACTGGATCACAAGGG] [+] EMBL AL933757 [ATCGCCCGAGGGGGACTTCTCCGATCGAGAGTGCTAGTTGTACTAAGCTTGGGGCTTTAGATACACGTTTATCAACGTGACACGTTTGGAATAGATGCTTGATCTAGTAGCAATGGGTACTACCCTGAGGTGGATTTGTGTGATTGGATTGGTGGTTTGCGTGAGTGCCGGTGTTGTGGTCGATTATTATGAGGATGAGGGAAGTGCAAACGGACCGCCGACAACTTCGATCGTACCACAACTGATAATTGGAATGGTACGAATGATCGTTCTCGCGAATGCTGTCATATATGATCGTGCTGCGTTGCGAAACAGTGATGCAATATCAAAACAACAACACCAATATAGCAACCGTACTGAAAAGGCTTGATTGTAACTTATACGACCTATGTTTACTTTTCTACAGCGAGCATTGTTTGACGCTCCGATCGTGTGCCCNGATGGAACCGTACTGGATCACAAGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7863#0 GGGTATTTCTGCAAGGAGTGAATCCGCGGCTGCTGGCGAATGATAAGATAAAACTGCGCC 60 consensus_7863#2 ------------------------------------------------------------ consensus_7863#3 ------------------------------------------------------------ consensus_7863#1 ---------CCGCCCACGCGTCCGCTCAACACGTACGGCAGTGTGGCTGTGCCTTGCACT 51 consensus_7863#0 ACTTGAGAGTGAGAGTTCGTGCGAGAAGGAAGTGCGCGGTTTTTGCATCTTTGCTGTGGG 120 consensus_7863#2 --------------------------------------------CCGCCCACGCGTCCG- 15 consensus_7863#3 ----------------------------------------------ATCGCCCGAGGGGG 14 consensus_7863#1 GCTCGCGATCACTACTGCACCGTCGCCCGTTTTATCCGACGAAGGTGACGAGCAGGAGCA 111 * consensus_7863#0 ACTTCTCCGATCGAGAGTGCTAGTTGTACTAGAGCTTGGGGCTTTAGATACACGTTTATC 180 consensus_7863#2 -CTTCTCCGATCGAGAGTGCTAGTTGTACTAGAGCTTGGGGCTTTAGATACACGTTTATC 74 consensus_7863#3 ACTTCTCCGATCGAGAGTGCTAGTTGTACTA-AGCTTGGGGCTTTAGATACACGTTTATC 73 consensus_7863#1 GGAAGCGCACACAACGCAGGAAGCGCAGGTGGCGCATGAAGAGCAAGCTACCGCACCAAC 171 * * * * ** * ** ** * ** *** * * consensus_7863#0 AACGTGACACGTTTGGAATAGATGCTTGATCTA----GTAGCAATGGGTACTACCCTGAG 236 consensus_7863#2 AACGTGACACGTTTGGAATAGATGCTTGATCTA----GTAGCAATGGGTACTACCCTGAG 130 consensus_7863#3 AACGTGACACGTTTGGAATAGATGCTTGATCTA----GTAGCAATGGGTACTACCCTGAG 129 consensus_7863#1 CCCGGAAGCCAATGGGGAAGAAGGTGTAGGTGAAGGTGAAGCAACCGATACGGATG-GGG 230 ** * * * ** * * * * * * ***** * *** * * consensus_7863#0 GTGGATTTGTGTGATTGGATTGGTGGTGTGCGTG---AGTGCCGGTGTTGTGGTCGATTA 293 consensus_7863#2 GTGGATTTGTGTGATTGGATTGGTGGTTTGCGTG---AGTGCCGGTGTTGTGGTCGATTA 187 consensus_7863#3 GTGGATTTGTGTGATTGGATTGGTGGTTTGCGTG---AGTGCCGGTGTTGTGGTCGATTA 186 consensus_7863#1 AAGAAGCGGCCGAAACGGACGGAGCGAACCCGGGCGGAATGTTCGTGATGCAGCCGATCA 290 * * * * *** * * ** * * ** *** ** * **** * consensus_7863#0 TTATGAGGAT-GAGGGAAGTGCAAACGGACCGC-CGACAACTTCGATCGTACCA-CAACT 350 consensus_7863#2 TTATGAGGAT-GAGGGAAGTGCAAACGGACCGC-CGACAACTTCGATCGTACCA-CAACT 244 consensus_7863#3 TTATGAGGAT-GAGGGAAGTGCAAACGGACCGC-CGACAACTTCGATCGTACCA-CAACT 243 consensus_7863#1 ACATACTGCTCGCACCGACCGCCTGCAAGCCGGGCTATCGTGTCGATCATAAGGGCAAGT 350 ** * * * * ** * *** * * ****** ** *** * consensus_7863#0 GATAATTGGAAT-----GCGAGCATTGTTTGACGCTCCGATCGTGTGCCCGGATGGAACC 405 consensus_7863#2 GATAATTGGAAT-----GCGAGCATTGTTTGACGCTCCGATCGTGTGCCCGGATGGAACC 299 consensus_7863#3 GATAATTGGAAT-----GGTACGAATGATCGTTCTCGCGA--ATGCTGTCATATATGATC 296 consensus_7863#1 GTCGGCCCACACTGTGAGCGAGCATTGTTTGACGCTCCGATCGTGTGCCCGGATGGAACC 410 * * * * * ** * * *** ** * ** * * consensus_7863#0 GTACTGGATCACAAGGGTGTATGCCGACGACCGATGGGGAGATGAAGTTCAAATTTACAG 465 consensus_7863#2 GTACTGGATCACAAGGGTGTATGCCGACGACCGATGGGGAGATGAAGTTCAAATTTACAG 359 consensus_7863#3 GTGCTGCGTTGCGAAACAGT-----GATGCAATATCAAAACAACAACACCAATATAGCAA 351 consensus_7863#1 GTACTGGATCACAAGGGTGTATGCCGACGACCGATGGGGAGATGAAGTTCAAATTTACAG 470 ** *** * * * ** ** * ** * * ** *** * ** consensus_7863#0 TTCC-CTAAATCAACCCAACAATGTATCGCAAAGTCGATCTTCACAATC--ACTATGAAT 522 consensus_7863#2 TTCC-CTAAATCAGCCCAACAATGTATCGCAAAGTCGATCTTCACAATC--ACTATGAAT 416 consensus_7863#3 CCGTACTGAAAAGGCTTGATTGTAACTTATACGACCTATGTTTACTTTTCTACAGCGAGC 411 consensus_7863#1 TTCC-CTAAATCAGCCCAACAATGTATCGCAAAGTCGATCTTCACAATC--ACTATGAAT 527 ** ** * * * * * * ** ** ** * ** ** consensus_7863#0 ATATTCTAAATGTTTGTTTAACTACAACACCTTACGCCAAAGTGATGCAATAAAGCTTAA 582 consensus_7863#2 ATATTCTAAATGTTTGTTTAACTATAACACCTTACGCCAAAGTGATGCAATAAAGCTTAA 476 consensus_7863#3 ATTGTTTGACGCTCCGATCGTGTGCC-CNGATGGAACCGTACTGGATCACAAGGG----- 465 consensus_7863#1 ATATTCTAAATGTTTGTTTAACTACAACACCTTACGCCAAAGTGATGCAATAAAGCTTAA 587 ** * * * * * * * * * ** * ** ** * * consensus_7863#0 CCTACTGTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCCGGGGG 642 consensus_7863#2 CCTACTGTCATCAATTG------------------------------------------- 493 consensus_7863#3 ------------------------------------------------------------ consensus_7863#1 CCTACTGTCATCAATTG------------------------------------------- 604 consensus_7863#0 G 643 consensus_7863#2 - consensus_7863#3 - consensus_7863#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||