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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7867#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1029 fasta sequence
[AGATATAATACCGGTAGAACGGTTCGTTCTTACTGCTCGGAAAATGCAACTCCTCATAGCGATCTTCTCGCTGCTTCTGGCAGTTGGTGGTAACTTCACGCACGCCTTCGACTATTGTGCAGCATCGAAGGATCTCTGTCCCGTGCCCGGTTCGCGGCATGTCGTTTGCAATGGGAGGCAATTTGCGCCCGCTTGCAAAAGTCCCAAGCTTATCAAGATGAAACCCGAATACCGGGCACAAATACTGGAGTTTCACAATCGATTGCGGAACAATCTTGCCTGCGGATACTTTCACCGGTACGCCGAAGCGAGTTCGATGGAGGAGCTGCACTGGGACAATAAGCTGGCCCGCATAGCCGAGTACAATGCAAGGACGTGCAGCTTCGAGCACGATGAGTGCCGAAACACGCGCAGATATCGTACCGCTGGTCAGAACCTTGCCATAAATTGGTTCTACGGCATGAACGTGACGGTGGCGCAGGCGTTGGATAAGTTCCAGCGCCACTGGTTCCTGGAGTATAGGAAAGGCCGCCAGAAGATGCTCGACCGCTACACCAAACTCTCGATACAAGCCGGTATAGGACACTTCACGCAGATGATACACGCCGACACGCAGTACGTTGGCTGTGCGATGGTACGCTTTCAAGGCATCCATCAAGGTTTTCCGGTGACACAGTACTATCTGGTGTGTAACTACTCGGTGGGCAATCTGTACGAGCGACCCGTCTATCGGAAAGGTAAACGGTGCAGCAAGTGTAAGTACGGATGCTCGAACGACACGTCCTACCGATGCTTGTGCCGTTCGTCCGTGCGGAACTAGCAAAGTGTGCGGATGAATGTGTACTACTGCTTCGGGGAGATCTGTGTCTGAACAAGGAAAGGATCATCGGTATCGATAGGCTCTGGCGAGGAACTTAACGTGAAAGGGCGGTAAAGTTCAAACGATGCTATTGAACAAATGTAATCATAGTTTTTTTTGTGCGTATATAAATCAAAACTCTTCTTAAGTGTACTTCAATAAAAAAAACC]
[+] EMBL CNS08FDI [AGATATAATACCGGTAGAACGGTTCGTTCTTACTGCTCGGAAAATGCAACTCCTCATAGCGATCTTCTCGCTGCTTCTGGCAGTTGGTGGTAACTTCACGCACGCCTTCGACTATTGTGCAGCATCGAAGGATCTCTGTCCCGTGCCCGGTTCGCGGCATGTCGTTTGCAATGGGAGGCAATTTGCGCCCGCTTGCAAAAGTCCCAAGCTTATCAAGATGAAACCCGAATACCGGGCACAAATACTGGAGTTTCACAATCGATTGCGGAACAATCTTGCCTGCGGATACTTTCACCGGTACGCCGAAGCGAGTTCGATGGAGGAGCTGCACTGGGACAATAAGCTGGCCCGCATAGCCGAGTACAATGCAAGGACGTGCAGCTTCGAGCACGATGAGTGCCGAAACACGCGCAGATATCGTACCGCTGGTCAGAACCTTGCCATAAATTGGTTCTACGGCATGAACGTGACGGTGGCGCAGGCGTTGGATAAGTTCCAGCGCCACTGGTTCCTGGAGTATAGGAAAGGCCGCCAGAAGATGCTCGACCGCTACACCAAACTCTCGATACAAGCCGGTATAGGACACTTCACGCAGATGATACACGCCGACACGCAGTACGTTGGCTGTGCGATGGTACGCTTTCAAGGCATCCATCAAGGTTTTCCGGTGACACAGTACTATCTGGTGTGTAACTACTCGGTGGGCAATCTGTACGAGCGACCCGTCTATCGGAAAGGTAAACGGTGCAGCAAGTGTAAGTACGGATGCTCGAACGACACGTCCTACCGATGCTTGTGCCGTTCGTCCGTGCGGAACTAGCAAAGTGTGCGGATGAATGTGTACTACTGCTTCGGGGAGATCTGTGTCTGAACAAGGAAAGGATCATCGGTATCGATAGGCTCTGGCGAGGAACTTAACGTGAAAGGGCGGTAAAGTTCAAACGATGCTATTGAACAAATGTAATCATAGTTTTTTTTGTGCGTATATAAATCAAAACTCTTCTTAAG ]
[+] EMBL CNS08UFC [ GAACGGTTCGTTCTTACTGCTCGGAAAATGCAACTCCTCATAGCGATCTTCTCGCTGCTTCTGGCAGTTGGTGGTAACTTCACGCACGCCTTCGACTATTGTGCAGCATCGAAGGATCTCTGTCCCGTGCCCGGTTCGCGGCATGTCGTTTGCAATGGGAGGCAATTTGCGCCCGCTTGCAAAAGTCCCAAGCTTATCAAGATGAAACCCGAATACCGGGCACAAATACTGGAGTTTCACAATCGATTGCGGGACAATCTTGCCTGCGGATACTTTCACCGGTACGCCGAAGCGAGTTCGATGGAGGAGCTGCACTGGGACAATAAGCTGGCCCGCATAGCCGAGTACAATGCAAGGACGTGCAGCTTCGAGCACGATGAGTGCCGAAACACGCGCAGATATCGTACCGCTGGTCAGAACCTTGCCATAAATTGGTTCTACGGCATGAACGTGACGGTGGCGCAGGCGTTGGATAAGTTCCAGCGCCACTGGTTCCTGGAGTATAGGAAAGGCCGCCAGAAGATGCTCGACCGCTACACCAAACTCTCGATACAAGCCGGTATAGGACACTTCACGCAGATGATACACGCCGACACGCAGTACGTTGGCTGTGCGATGGTACGCTTTCAAGGCATCCATCAAGGTTTTCCGGTGACACAGTACTATCTGGTGTGTAACTACTCGGTGGGCAATCTGTACGAGCGACCCGTCTATCGGAAAGGTAAACGGTGCAGCAAGTGTAAGTACGGATGCTCGAACGACACGTCCTACCGATGCTTGTGCCGTTCGTCCGTGCGGAACTAGCAAAGTGTGCGGATGAATGTGTACTGCTGCTTCGGGGAGATCTGTGTCTGAACAAGGAAAGGATCATCGGTATCGATAGGCTCTGGCGAGGAACTTAACGTGAAAGGGCGGTAAAGTTCAAACGATGCTATTGAACAAATGTAATCATAGTTTTTTTTGTGCGTATATAAATCAAAACT ]
[+] EMBL BM640193 [ ccgACGGTTCGTTCTTACTGCTCGGAAAATGCAACTCCTCATAGCGATCTTCTCGCTGCTTCTGGCAGTTGGTGGTAACTTCACGCACGCCTTCGACTATTGTGCAGCATCGAAGGATCTCTGTCCCGTGCCCGGTTCGCGGCATGTCGTTTGCAATGGGAGGCAATTTGCGCCCGCTTGCAAAAGTCCCAAGCTTATCAAGATGAAACCCGAATACCGGGCACAAATACTGGAGTTTCACAATCGATTGCGGAACAATCTTGCCTGCGGATACTTTCACCGGTACGCCGAAGCGAGTTCGATGGAGGAGCTGCACTGGGACAATAAGCTGGCCCGCATAGCCGAGTACAATGCAAGGACGTGCAGCTTCGAGCACGATGAGTGCCGAAACACTCGCAGATATCGTACCGCTGGTCAGAACCTTGCCATAAATTGGTTCTACGGCATGAACGTGACGGTGGCGCAGGCGTTAGATAAGTTCCAGCGCCACTGGTTCCTGGAGTATAGGAAAGGCCGCCAGAAGATGCTCGACCGCTACACCAAACTCTCGTTACAAGCCGGTATAGGACACTTCACGCAGATGATACACGCCGACACGCAGTACGTTGGCTGTGCGATGGTACGCTTTCAA ]
[+] EMBL BM623064 [ cCGGTTCGTTCTTACTGCTCGGAAAATGCAACTCCTCATAGCGATCTTCTCGCTGCTTCTGGCAGTTGGTGGTAACTTCACGCACGCCTTCGACTATTGTGCAGCATCGAAGGATCTCTGTCCCGTGCCCGGTTCGCGGCATGTCGTTTGCAATGGGAGGCAATTTGCGCCCGCTTGCAAAAGTCCCAAGCTTATCAAGATGAAACCCGAATACCGGGCACAAATACTGGAGTTTCACAATCGATTGCGGAACAATCTTGCCTGCGGATACTTTCACCGGTACGCCGAAGCGAGTTCGATGGAGGAGCAGCACTGGGACAATAAGCTGGCCCGCATAGCCGAGTACAATGCAAGGACGTGCAGCTTCGAGCACGATGAGTGCCGAAACACGCGCAGATATCGTACCGCTGGTCAGAACCTTGCCATATATTGGTTCTACGGCATGAACGTGACGGTGGCGCAGGCGTTGGATAAGTTCCAGCGCCACTGGTTCCTGGAGTATAGGAAAGGCCGCCAGAAGATGCTCGACCGCTACACCAAACTCTCGATACCAGCCGG ]
[-] EMBL CNS08FDJ [ GTTCTTACTGCTCGGAAAATGCAACTCCTCATAGCGATCTTCTCGCTGCTTCTGGCAGTTGGTGGTAACTTAACGCACGCCTTCGACTATTGTGCAGCATCGAAGGATTTTTGTCCCGTGCCCGGTTCGCGGCATGTCGTTTGCAATGGGAGGCAATTTGCGCCCGCTTGCAAAAGTCCCAAGCTTATCAAGATGAAACCCGAATACCGGGCACAAAAACTGGAGTTTAACAATCGATTGCGGAACAATCTTGCCTGCGGATACTTTCACCGGTACGCCGAAGCGAGTTCGATGGAGGAGCTGCACTGGGACAATAAGCTGGCCCGCATAGCCGAGTACAATGCAAAAACGTGCAGCTTCGAGCACGATGAGTGCCGAAACACGCGCAGATATCGTACCGCTGGTCAGAACCTTGCCATAAATTGGTTCTACGGCATGAACGTGACGGTGGCGCAGGCGTTGGATAAGTTCCAGCGCCACTGGTTCCTGGAGTATAGGAAAGGCCGCCAGAAGATGCTCGACCGCTACACCAAACTCTCGATACAAGCCGGTATAGGACACTTCACGCAGATGATACACGCCGACACGCAGTACGTTGGCTGTGCGATGGTACGCTTTCAAGGCATCCATCAAGGTTTTCCGGTGACACAGTACTTTCTGGTGTGTAACTACTCGGTGGGCAATCTGTACGAGCGACCCGTCTATCGGAAAGGTAAACGGTGCAGCAAGTGTAAGTACGGATGCTCGAACGACACGTCCTACCGATGCTTGTGCCGTTCGTCCGTGCGGAACTAGCAAAGTGTGCGGATGAATGTGTACTACTGCTTCGGGGAGATCTGTGTCTGAACAAGGAAAGGATCATCGGTATCGATAGGCTCTGGCGAGGAACTTAACGTGAAAGGGCGGTAAAGTTCAAACGATGCTATTGAACAAATGTAATCATAGTTTTTTTTGTGCGTATATAAATCAAAACTCTTCTTAAGTGTACTTCAATAAAAAAAACC]
[-] EMBL CNS08UFD [ TAACTTAACGCACGCCTTCGACTATTGTGCAGCATCGAAGGATCTTTGTCCCGTGCCCGGTTCGCGGCATGTCGTTTGCAATGGGAGGCAATTTGCGCCCGCTTGCAAAAGTCCCAAGCTTATCAAGATGAAACCCGAATACCGGGCACAAATACTGGAGTTTCACAATCGATTGCGGGACAATCTTGCCTGCGGATACTTTCACCGGTACGCCGAAGCGAGTTCGATGGAGGAGCTGTACTGGGACAATAAGCTGGCCCGCATAGCCGAGTACAATGCAAGGACGTGCAGCTTCGAGCACGATAAGTGCCGAAACACGCGCAGATATCGTACCGCTGGTCAGAACCTTGCCATAAATTGGTTCTACGGCATGAACGTGACGGTGGCGCAGGCGTTGGATAAGTTCCAGCGCCACTGGTTCCTGGAGTATAGGAAAGGCCGCCAGAAGATGCTCGACCGCTACACCAAACTCTCGATACAAGCCGGTATAGGACACTTCACGCAGATGATACACGCCGACACGCAGTACGTTGGCTGTGCGATGGTACGCTTTCAAGGCATCCATCAAGGTTTTCCGGTGACACAGTACTTTCTGGTGTGTAACTACTCGGTGGGCAATCTGTACGAGCGACCCGTCTATCGGAAAGGTAAACGGTGCAGCAAGTGTAAGTACGGATGCTCGAACGACACGTCCTACCGATGCTTGTGCCGTTCGTCCGTGCGGAACTAGCAAAGTGTGCGGATGAATGTGTACTGCTGCTTCGGGGAGATCTGTGTCTGAACAAGGAAAGGATCATCGGTATCGATAGGCTCTGGCGAGGAACTTAACGTGAAAGGGCGGTAAAGTTCAAACGATGCTATTGAACAAATGTAATCATAGTTTTTTTTGTGCGTATATAAATCAAAACTCTTCTTAAGTGT ]
[+] EMBL BM596039 [ ccgATAGGAAAGGCCGCCAGAAGATGCTCGACCGCTACACCAAACTCTCGATACAAGCCGGTATAGGACACTTCACGCAGATGATACACGCCGACACGCAGTACGTTGGCTGTGCGATGGTACGCTTTCAAGGCATCCATCAAGGTTTTCCGGTGACACAGTACTATCTGGTGTGTAACTACTCGGTGGGCAATCTGTACGAGCGACCCGTCTATCGGAAAGGTAAACGGTGCAGCAAGTGTAAATACGGATGCTCGAACGACACGTCCTACCGATGCTTGTGCCGTTCGTCCGTGCGGAACTAGCAAAGTGTGCGGATGAATGTGTACTACTGCTTCGGGGAGATCTGTGTCTGAACAAGGAAAGGATCATCGGTATCGATAGGCTCTGGCGAGGAACTTAACGTGAAAGGGCGGTAAAGTTCAAACGATGCTATTGAACAAATTTAATCATAGTTTTTTTTGTGCGTATATAAATCAAAACTCTTCTT ]
consensusID : consensus_7867#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence
[ACCGGGCACAAATACTGGAGTTTCACAATCGATTGCGGAACAATCTTGCCTGTGGATACTTTCACCGGTACGCCGAAGCGAGTTCGATGGAGGAGCTGCACTGGGACAATAAGCTGGCCCGCATAGCCGAGTACAATGCAAGGACGTGTAGCTTCGAGCACGATGAGTGCCGAAACACGCGCAGATATCGTACCGCTGGTCAGAACCTTGCCATAAATTGGTTCTACGGCATGAACGTGACGGTGGCGCAGGCGTTGGATAAGTTCCAGCGCCACTGGTTCCTGGAGTATAGGAAAGGCCGCCAGAAGATGCTCGACCGCTACACCAAACTCTCGATACAAGCCGGTATAGGACACTTCACGCAGATGATACACGCCGACACGCAGTACGTTGGCTGTGCGATGGTACGCAGCAAGTGTAAGTACGGATGCTCGAACGACACGTCCTACCGATGCTTGTGCCGTTCGTCCGTGCGGAACTAGCATAGTGTGCGGATGAATGTGTATTACTGCTTCGGGGAGATCTGTGTCTGAACAAGGAAAGGATCATCGGTATCGATAGGCTCTGGCGAGGAACTTGACGTGAAAGGGCGGTAAAGTTCAAACGATGCTATTGAACAAATTTAATCATAGTTTTTTTTGTGCGTATATAAATCAAAACTCTT]
[+] EMBL BX627934 [ACCGGGCACAAATACTGGAGTTTCACAATCGATTGCGGAACAATCTTGCCTGTGGATACTTTCACCGGTACGCCGAAGCGAGTTCGATGGAGGAGCTGCACTGGGACAATAAGCTGGCCCGCATAGCCGAGTACAATGCAAGGACGTGTAGCTTCGAGCACGATGAGTGCCGAAACACGCGCAGATATCGTACCGCTGGTCAGAACCTTGCCATAAATTGGTTCTACGGCATGAACGTGACGGTGGCGCAGGCGTTGGATAAGTTCCAGCGCCACTGGTTCCTGGAGTATAGGAAAGGCCGCCAGAAGATGCTCGACCGCTACACCAAACTCTCGATACAAGCCGGTATAGGACACTTCACGCAGATGATACACGCCGACACGCAGTACGTTGGCTGTGCGATGGTACGCAGCAAGTGTAAGTACGGATGCTCGAACGACACGTCCTACCGATGCTTGTGCCGTTCGTCCGTGCGGAACTAGCATAGTGTGCGGATGAATGTGTATTACTGCTTCGGGGAGATCTGTGTCTGAACAAGGAAAGGATCATCGGTATCGATAGGCTCTGGCGAGGAACTTGACGTGAAAGGGCGGTAAAGTTCAAACGATGCTATTGAACAAATTTAATCATAGTTTTTTTTGTGCGTATATAAATCAAAACTCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7867#0 AGATATAATACCGGTAGAACGGTTCGTTCTTACTGCTCGGAAAATGCAACTCCTCATAGC 60
consensus_7867#1 ------------------------------------------------------------
consensus_7867#0 GATCTTCTCGCTGCTTCTGGCAGTTGGTGGTAACTTCACGCACGCCTTCGACTATTGTGC 120
consensus_7867#1 ------------------------------------------------------------
consensus_7867#0 AGCATCGAAGGATCTCTGTCCCGTGCCCGGTTCGCGGCATGTCGTTTGCAATGGGAGGCA 180
consensus_7867#1 ------------------------------------------------------------
consensus_7867#0 ATTTGCGCCCGCTTGCAAAAGTCCCAAGCTTATCAAGATGAAACCCGAATACCGGGCACA 240
consensus_7867#1 --------------------------------------------------ACCGGGCACA 10
**********
consensus_7867#0 AATACTGGAGTTTCACAATCGATTGCGGAACAATCTTGCCTGCGGATACTTTCACCGGTA 300
consensus_7867#1 AATACTGGAGTTTCACAATCGATTGCGGAACAATCTTGCCTGTGGATACTTTCACCGGTA 70
****************************************** *****************
consensus_7867#0 CGCCGAAGCGAGTTCGATGGAGGAGCTGCACTGGGACAATAAGCTGGCCCGCATAGCCGA 360
consensus_7867#1 CGCCGAAGCGAGTTCGATGGAGGAGCTGCACTGGGACAATAAGCTGGCCCGCATAGCCGA 130
************************************************************
consensus_7867#0 GTACAATGCAAGGACGTGCAGCTTCGAGCACGATGAGTGCCGAAACACGCGCAGATATCG 420
consensus_7867#1 GTACAATGCAAGGACGTGTAGCTTCGAGCACGATGAGTGCCGAAACACGCGCAGATATCG 190
****************** *****************************************
consensus_7867#0 TACCGCTGGTCAGAACCTTGCCATAAATTGGTTCTACGGCATGAACGTGACGGTGGCGCA 480
consensus_7867#1 TACCGCTGGTCAGAACCTTGCCATAAATTGGTTCTACGGCATGAACGTGACGGTGGCGCA 250
************************************************************
consensus_7867#0 GGCGTTGGATAAGTTCCAGCGCCACTGGTTCCTGGAGTATAGGAAAGGCCGCCAGAAGAT 540
consensus_7867#1 GGCGTTGGATAAGTTCCAGCGCCACTGGTTCCTGGAGTATAGGAAAGGCCGCCAGAAGAT 310
************************************************************
consensus_7867#0 GCTCGACCGCTACACCAAACTCTCGATACAAGCCGGTATAGGACACTTCACGCAGATGAT 600
consensus_7867#1 GCTCGACCGCTACACCAAACTCTCGATACAAGCCGGTATAGGACACTTCACGCAGATGAT 370
************************************************************
consensus_7867#0 ACACGCCGACACGCAGTACGTTGGCTGTGCGATGGTACGCTTTCAAGGCATCCATCAAGG 660
consensus_7867#1 ACACGCCGACACGCAGTACGTTGGCTGTGCGATGGTACGC-------------------- 410
****************************************
consensus_7867#0 TTTTCCGGTGACACAGTACTATCTGGTGTGTAACTACTCGGTGGGCAATCTGTACGAGCG 720
consensus_7867#1 ------------------------------------------------------------
consensus_7867#0 ACCCGTCTATCGGAAAGGTAAACGGTGCAGCAAGTGTAAGTACGGATGCTCGAACGACAC 780
consensus_7867#1 ----------------------------AGCAAGTGTAAGTACGGATGCTCGAACGACAC 442
********************************
consensus_7867#0 GTCCTACCGATGCTTGTGCCGTTCGTCCGTGCGGAACTAGCAAAGTGTGCGGATGAATGT 840
consensus_7867#1 GTCCTACCGATGCTTGTGCCGTTCGTCCGTGCGGAACTAGCATAGTGTGCGGATGAATGT 502
****************************************** *****************
consensus_7867#0 GTACTACTGCTTCGGGGAGATCTGTGTCTGAACAAGGAAAGGATCATCGGTATCGATAGG 900
consensus_7867#1 GTATTACTGCTTCGGGGAGATCTGTGTCTGAACAAGGAAAGGATCATCGGTATCGATAGG 562
*** ********************************************************
consensus_7867#0 CTCTGGCGAGGAACTTAACGTGAAAGGGCGGTAAAGTTCAAACGATGCTATTGAACAAAT 960
consensus_7867#1 CTCTGGCGAGGAACTTGACGTGAAAGGGCGGTAAAGTTCAAACGATGCTATTGAACAAAT 622
**************** *******************************************
consensus_7867#0 GTAATCATAGTTTTTTTTGTGCGTATATAAATCAAAACTCTTCTTAAGTGTACTTCAATA 1020
consensus_7867#1 TTAATCATAGTTTTTTTTGTGCGTATATAAATCAAAACTCTT------------------ 664
*****************************************
consensus_7867#0 AAAAAAACC 1029
consensus_7867#1 ---------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||