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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7879#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 917 fasta sequence
[CGTGTTATTTGCTTAACCATTTATCTTCTGCTTTCGGTCTTAATGTTAACGTGCTCCTAAAATGAAACGGAATTTCGTTCTCTCTCTGTATAGTAATTCACCCGCC--TACCCCGGATACGCCAAGGATTTGCTACAAAA-CCCTTCCTGGAATGCACCCGGATGTGTAAGGTGCAATGGGCCCCCGCGTGGCTTGACGGTTTTGGTATCTATATATGAGGGGCAAAAGCAAGCAAATGAATGTTCCACTCCCGAGTGCTCACTTTAGCAGTGACCATTT-CAGTTGCTCTTTGGCCGACTGTAGAACCTGGGCAACGGTTTGCTCCCCGATCGGAATGTCATCGTTTCGCAGGTCGACCCGCTTCATCACGGACGAGGGATCTGCATCCAGGATAATGCCTCCGTCGCAGATTTCATCGAACGCCAGCATCACAATGTCGAGATTTTCCAGCACCGCCCGCTTCTCCACATTTTTCTTCAGTATCATCGTGATCGTGTCGTACAGACAGTTCAGCACCGACAGCAGTATCAGCTCGTTCTCCTGCGTGCTGCCCATCACGTAGAAGAACAGATCCACATTGCTCTTGTACACGCAGGTCAGCCCATCGAGCATGATGATTTCCGCATCCGCCCGGTGTGTTTTGCTGAACAGGTTTTTCTCGTACGCCCGCTGCTCCTTCACCGTGGGGAACACGTTCTTGTCGTAGTACTTGGCCAGTATGCGGTTCCCATCGTTGTCCAGTATGCACATGCCCTTGATGGTGTACAGCGTTGGTTCCATAAGTGAGTCCATTCTGTCTGTCGTAGAGTGGATAACTATTTTAAAGCAC-TAAATAATACTTTTTCTCC-ACAATAATCATGAAATTTACAACAAAATCTACGAAACAGTCCGCCTCCAGCAACTAACACACAGTAAACGG]
[-] EMBL BM589771 [CGTGTTATTTGCTTAACCATTTATCTTCTGCTTTCGGTCTTAATGTTAACGTGCTCCTAAAATGAAACGGAATTTCGTTCTCTCTCTGTATAGTAATTCACCCGCC TACCCCGGATACGCCAAGGATTTGCTACAAAACCCCTTCCTGGAATGCACCCGGATGTGTAAGGTGCAATGGGCCCCCGCGTGGCTTGACGGTTTTGGTATCTATATATGA GGGCAAAAGCAAGCAAATGAATGTTCCACTCCCGAGTGCTCACTTTAGCAGTGACCATTT CAGTTGCTCTTTGGCCGACTGTAGAACCTGGGCAACGGTTTGCTCCCCGATCGGAATGTCATCGTTTCGCAGGTCGACCCGCTTCATCACGGACGAGGGATCTGCATCCAGGATAATGCCTCCGTCGCAGATTTCATCGAACGCCAGCATCACAATGTCGAGATTTTCCAGCACCGCCCGCTTCcgg ]
[+] EMBL CNS09JYR [ AAACGGAAATTCGTTCTCTTTCTGTATAGTAATTCACCCGCCAGAACCCCGGATACGCCAAGGATTTGCTACAAAA CCCTTCCTGGAATGCACCCGGATGTGTAAGGTGCAGTGGGCCCCCGGGTGGCTTGACGGTTTTGGTATCTATATATGAGGGGCGAAAGCAAGCAAATGAATGTTCCACTCCCGAGTGCTCACTTTAGCAGTAACCATTT CAGTTGCTCTTTGGCCGACTGTAGAACCTGGGCAACGGTTTGCTCCCCGATCGGAATGTCATCGTTTCGCAGGTCGACCCGCTTCATCACGGACGAGGGATCTGCATCCGGGATAATGCCTCCGTCGCAGATTTCATCGAACGCCAGCATCACAATGTCGAGATTTTCCAGCACCGCCCGCTTCTCCACATTTTTCTTCAGTATCATCGTGATCGTGTCGTACAGACAGTTCAGCACCGACAGCAGTTTCAGCTCGTTCTCCTGCGTGCTGCCCATCACGTAGAAGAACAGATCCACATTGCTCTTGTACACGCAGGTCAGCCCATCGAGCATGATGATTTCCGCATCCGCCCGGTGTGTTTTGCTGAACAGGTTTTTCTCGTACGCCCGCTGCTCCTTCACCGTGGGGAACACGTTCTTGTCGTAGTACTTGGCCAGTATGCGGTTCCCATCGTTGTCCAGTATGCACATGCCCTTGATGGTGTACAGCGTTGGTTCCATAAGTGAGTCCATTCTGTCTGTCGTAGAGTGGATAACTATTTAAAAGCA ]
[-] EMBL BX605346 [ TATCTATATATGAGGGGCGAAAGCAAGCAAATGAATGTTCCACTCCCGAGTGCTCACTTTAGCAGTGACCATTT CAGTTGCTCTTTGGCCGACTGTAGAACCTGGGCAACGGTTTGCTCCCCGATCGGAATGTCATCGTTTCGCAGGTCGACCCGCTTCATCACGGACGAGGGATCTGCATCCAGGATAATGCCTCCGTCGCAGATTTCATCGAACGCCAGCATCACAATGTCGAGATTTTCCAGCACCGCCCGCTTCTCCACATTTTTCTTCAGTATCATCGTGATCGTGTCGTACAGACAGTTCAGCACCGACAGCAGTATCAGCTCGTTCTCCTGCGTGCTGCCCATCACGTAGAAGAACAGATCCACATTGCTCTTGTACACGCAGGTCAGCCCATCGAGCATGATGATTTCCGCATCCGCCCGGTGTGTTTTGCTGAACAGGTTTTTCTCGTACGCCCGCTGCTCCTTCACCGTGGGGAACACGTTCTTGTCGTAGTACTTGGCCAGTATGCGGTTCCCATCGTTGTCCAGTATGCACATGCCCTTGATGGTGTACAGCGTTGGTTCCATAAGTGAGTCCATTCTGTCTGTCGTAGAGTGGATAACTATTTTAAAGCACGTAAATAATACTTTTTCTCCTACAATAATCATGAAATTTA ]
[-] EMBL BM585278 [ aGGGCAAAAGCAAGCAAATGAATGTTCCACTCCCGAGTGCTCACTTTAGCAGTGACCATTTGCAGTTGCTCTTTGGCCGACTGTAGAACCTGGGCAACGGTTTGCTCCCCGATCGGAATGTCATCGTTTCGCAGGTCGACCCGCTTCATCACGGACGAGGGATCTGCATCCAGGATAATGCCTCCGTCGCAGATTTCATCGAACGCCAGCATCACAATGTCGAGATTTTCCAGCACCGCCCGCTTCTCCACATTTTTCTTCAGTATCATCGTGATCGTGTCGTACAGACAGTTCAGCACCGACAGCAGTATCAGCTCGTTCTCCTGCGTGCTGCCCATCACGTAGAAGAACAGATCCACATTGCTCTTGTACACACAGGTCAGCCCATCGAGCATGATGATTTCCGCATCCGCCCGGTGTGTTTTGCTGAACAGGTTCTTCTCGTAAGCCCGCTGCTCCTTCACCGTGGGGAACACGTTCTTGTCGTAGTACTTGGCCAGTATGCGGTTCCCATCGTTGTCCAGTATGCACATGCCCTTGATGGTGTACAGCGTTGGTTCCATAAGTGAATCCATTTTGTCTGTCGTAGAGTGGATTACTATTTTAAAGCAC TAAAAAATGCCTTTTCCGC ACAATAATCATGAAATTTACAACAAAATCTACGAAACAGTCTGCCTCCAGCAACTAACACACAGTAAACGG]
[-] EMBL BX605195 [ TCACAATGTCGAGATTTTCCAGCACCGCCCGCTTCTCCACATTTTTCTTCAGTATCATCGTGATCGTGTCGTACAGACAGTTCAGCACCGACAGCAGTATCAGCTCGTTCTCCTGCGTGCTGCCCATCACGTAGAAGAACAGATCCACATTGCTCTTGTACACGCAGGTCAGCCCATCGAGCATGATGATTTCCGCATCCGCCCGGTGTGTTTTGCTGAACAGGTTTTTCTCGTACGCCCGCTGCTCCTTCACCGTGGGGAACACGTTCTTGTCGTAGTACTTGGCCAGTATGCGGTTCCCATCGTTGTCCAGTATGCACATGCCCTTGATGGTGTACAGCGTTGGTTCCATAAGTGAGTCCATTCTGTCTGTCGTAGAGTGGATAACTATTTTAAAGCAC TAAATAATACTTTTTCTCC ACAATAATCATGAAATTTACAACAAAATCTACGAAACAGTCCGCCTTCAGCA ]
[-] EMBL BM612380 [ TTTTCTTCAGTATCATCGTGATCGTGTCGTACAGACAGTTCAGCACCGACAGCAGTATCAGCTCGTTCTCCTGCGTGCTACCCATCACGTAGAAGAACAGATCCACATTGCTGTTGTACACGCAGGTCAGCCCATCGAGCATGATGATTTCCGCATCCGCCCGGTGTGTTTTGCTGAACAGGTTCTTCTCGTACGCCCGCTGCTCCTTCACCGTGGGGAACACGTTCTTGTCGTAGTACTTGGCCAGTATGCGGTTCCCATCGTTGTCCAGTATGCACATGCCCTTGATGGTGTACAGCGTTGGTTCCATAAGTGAGTCCATTTAGTATATCGTAGAGTGGATTACTATTATAAAGCAC TAAATAATACTTTTTCTCC ACAATAATCATGAAATTTACAACAAAATCTACGAAACAGTCCGCCTCCAGCAACcgg ]
consensusID : consensus_7879#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[ATATATGAGGGCAAAAGCAAGCAAATGAATGTTCCACTCCCGAGTGCTCACTTTAGCAGTGACCATTTCAGTTGCTCTTTGGCCGACTGTAGAACCTGGGCAACGGTTTGCTCCCCGATCGGAATGTCATCGTTTCGCAGGTCGACCCGCTTCATCACGGACGAGGGATCTGCATCCAGGATAATGCCTCCGTCGCAGATTTCATCGAACGCCAGCATCACAATGTCGAGATTTTCCAGCACCGCCCGCTTCTCCACATTTTTCTTCAGTATCATCGTGATCGTGTCGTACAGACAGTTCAGCACCGACAGCAGTATCAGCTCGTTCTCCTGCGTGCTGCCCATCACGTAGAAGAACAGATCCACATTGCTCTTGTACACACAGGTCAGCCCATCGAGCATGATGATTTCCGCATCCGCCCGGTGTGTTTTGCTGAACAGGTTCTTCTCGTAAGCCCGCTGCTCCTTCACCGTGGGGAACACGTTCTTGTCGTAGTACTTGGCCAGTATGCGGTTCCCATCGTTGTCCAGTATGCACATGCCCTTGATGGTGTACAGCGTTGGTTCCATAAGTGAATCCATTTTGTCTGTCGTAGAGTGGATTACTATTTTAAAGCACTAAAAAATGCCTTTTCCGCACAATAATCATGAAATTTACAACAAAATCTACGAAACAGCGGACGCGTGGGCGG]
[-] EMBL BM609841 [ATATATGAGGGCAAAAGCAAGCAAATGAATGTTCCACTCCCGAGTGCTCACTTTAGCAGTGACCATTTCAGTTGCTCTTTGGCCGACTGTAGAACCTGGGCAACGGTTTGCTCCCCGATCGGAATGTCATCGTTTCGCAGGTCGACCCGCTTCATCACGGACGAGGGATCTGCATCCAGGATAATGCCTCCGTCGCAGATTTCATCGAACGCCAGCATCACAATGTCGAGATTTTCCAGCACCGCCCGCTTCTCCACATTTTTCTTCAGTATCATCGTGATCGTGTCGTACAGACAGTTCAGCACCGACAGCAGTATCAGCTCGTTCTCCTGCGTGCTGCCCATCACGTAGAAGAACAGATCCACATTGCTCTTGTACACACAGGTCAGCCCATCGAGCATGATGATTTCCGCATCCGCCCGGTGTGTTTTGCTGAACAGGTTCTTCTCGTAAGCCCGCTGCTCCTTCACCGTGGGGAACACGTTCTTGTCGTAGTACTTGGCCAGTATGCGGTTCCCATCGTTGTCCAGTATGCACATGCCCTTGATGGTGTACAGCGTTGGTTCCATAAGTGAATCCATTTTGTCTGTCGTAGAGTGGATTACTATTTTAAAGCACTAAAAAATGCCTTTTCCGCACAATAATCATGAAATTTACAACAAAATCTACGAAACAGCGGACGCGTGGGCGG]
consensusID : consensus_7879#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 415 fasta sequence
[TTTGCTCCCCGATCGGAATGTCATCGTTTCGCAGGTCGACCCGCTTCATCACGGACGAGGGATCTGCATCCAGGATAATGCCTCCGTCGCAGATTTCATCGAACGCCAGCATCACAATGTCGAGATTTTCCAGCACCGCCCGCTTCTCCACATTTTTCTTCAGTATCATCGTGATCGTGTCGTACAGACAGTTCAGCACCGACAGCAGTATCAGCTCCTTCACCGTGGGGAACACGTTCTTGTCGTAGTACTTGGCCAGTATGCGGTTCCCATCGTTGTCCAGTATGCACATGCCCTTGATGGTGTACAGCGTTGGTTCCATAAGTGAGTCCATTTTGTCTGTCGTAGAGTGGATTACTATTTTAAAGCACTAAAAAAATGCCTTTTACGCACAATAATCATGAAATTTACAACA]
[-] EMBL BX615693 [TTTGCTCCCCGATCGGAATGTCATCGTTTCGCAGGTCGACCCGCTTCATCACGGACGAGGGATCTGCATCCAGGATAATGCCTCCGTCGCAGATTTCATCGAACGCCAGCATCACAATGTCGAGATTTTCCAGCACCGCCCGCTTCTCCACATTTTTCTTCAGTATCATCGTGATCGTGTCGTACAGACAGTTCAGCACCGACAGCAGTATCAGCTCCTTCACCGTGGGGAACACGTTCTTGTCGTAGTACTTGGCCAGTATGCGGTTCCCATCGTTGTCCAGTATGCACATGCCCTTGATGGTGTACAGCGTTGGTTCCATAAGTGAGTCCATTTTGTCTGTCGTAGAGTGGATTACTATTTTAAAGCACTAAAAAAATGCCTTTTACGCACAATAATCATGAAATTTACAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7879#1 ------------------------------------------------------------
consensus_7879#2 ------------------------------------------------------------
consensus_7879#0 CGTGTTATTTGCTTAACCATTTATCTTCTGCTTTCGGTCTTAATGTTAACGTGCTCCTAA 60
consensus_7879#1 ------------------------------------------------------------
consensus_7879#2 ------------------------------------------------------------
consensus_7879#0 AATGAAACGGAATTTCGTTCTCTCTCTGTATAGTAATTCACCCGCCTACCCCGGATACGC 120
consensus_7879#1 ------------------------------------------------------------
consensus_7879#2 ------------------------------------------------------------
consensus_7879#0 CAAGGATTTGCTACAAAACCCTTCCTGGAATGCACCCGGATGTGTAAGGTGCAATGGGCC 180
consensus_7879#1 ----------------------------ATATATGAGGG-CAAAAGCAAGCAAATGAATG 31
consensus_7879#2 ------------------------------------------------------------
consensus_7879#0 CCCGCGTGGCTTGACGGTTTTGGTATCTATATATGAGGGGCAAAAGCAAGCAAATGAATG 240
consensus_7879#1 TTCCACTCCCGAGTGCTCACTTTAGCAGTGACCATTTCAGTTGCTCTTTGGCCGACTGTA 91
consensus_7879#2 ------------------------------------------------------------
consensus_7879#0 TTCCACTCCCGAGTGCTCACTTTAGCAGTGACCATTTCAGTTGCTCTTTGGCCGACTGTA 300
consensus_7879#1 GAACCTGGGCAACGGTTTGCTCCCCGATCGGAATGTCATCGTTTCGCAGGTCGACCCGCT 151
consensus_7879#2 ---------------TTTGCTCCCCGATCGGAATGTCATCGTTTCGCAGGTCGACCCGCT 45
consensus_7879#0 GAACCTGGGCAACGGTTTGCTCCCCGATCGGAATGTCATCGTTTCGCAGGTCGACCCGCT 360
*********************************************
consensus_7879#1 TCATCACGGACGAGGGATCTGCATCCAGGATAATGCCTCCGTCGCAGATTTCATCGAACG 211
consensus_7879#2 TCATCACGGACGAGGGATCTGCATCCAGGATAATGCCTCCGTCGCAGATTTCATCGAACG 105
consensus_7879#0 TCATCACGGACGAGGGATCTGCATCCAGGATAATGCCTCCGTCGCAGATTTCATCGAACG 420
************************************************************
consensus_7879#1 CCAGCATCACAATGTCGAGATTTTCCAGCACCGCCCGCTTCTCCACATTTTTCTTCAGTA 271
consensus_7879#2 CCAGCATCACAATGTCGAGATTTTCCAGCACCGCCCGCTTCTCCACATTTTTCTTCAGTA 165
consensus_7879#0 CCAGCATCACAATGTCGAGATTTTCCAGCACCGCCCGCTTCTCCACATTTTTCTTCAGTA 480
************************************************************
consensus_7879#1 TCATCGTGATCGTGTCGTACAGACAGTTCAGCACCGACAGCAGTATCAGCTCGTTCTCCT 331
consensus_7879#2 TCATCGTGATCGTGTCGTACAGACAGTTCAGCACCGACAGCAGTATCAGCTC-------- 217
consensus_7879#0 TCATCGTGATCGTGTCGTACAGACAGTTCAGCACCGACAGCAGTATCAGCTCGTTCTCCT 540
****************************************************
consensus_7879#1 GCGTGCTGCCCATCACGTAGAAGAACAGATCCACATTGCTCTTGTACACACAGGTCAGCC 391
consensus_7879#2 ------------------------------------------------------------
consensus_7879#0 GCGTGCTGCCCATCACGTAGAAGAACAGATCCACATTGCTCTTGTACACGCAGGTCAGCC 600
consensus_7879#1 CATCGAGCATGATGATTTCCGCATCCGCCCGGTGTGTTTTGCTGAACAGGTTCTTCTCGT 451
consensus_7879#2 ------------------------------------------------------------
consensus_7879#0 CATCGAGCATGATGATTTCCGCATCCGCCCGGTGTGTTTTGCTGAACAGGTTTTTCTCGT 660
consensus_7879#1 AAGCCCGCTGCTCCTTCACCGTGGGGAACACGTTCTTGTCGTAGTACTTGGCCAGTATGC 511
consensus_7879#2 -------------CTTCACCGTGGGGAACACGTTCTTGTCGTAGTACTTGGCCAGTATGC 264
consensus_7879#0 ACGCCCGCTGCTCCTTCACCGTGGGGAACACGTTCTTGTCGTAGTACTTGGCCAGTATGC 720
***********************************************
consensus_7879#1 GGTTCCCATCGTTGTCCAGTATGCACATGCCCTTGATGGTGTACAGCGTTGGTTCCATAA 571
consensus_7879#2 GGTTCCCATCGTTGTCCAGTATGCACATGCCCTTGATGGTGTACAGCGTTGGTTCCATAA 324
consensus_7879#0 GGTTCCCATCGTTGTCCAGTATGCACATGCCCTTGATGGTGTACAGCGTTGGTTCCATAA 780
************************************************************
consensus_7879#1 GTGAATCCATTTTGTCTGTCGTAGAGTGGATTACTATTTTAAAGCACTAAAAAA-TGCCT 630
consensus_7879#2 GTGAGTCCATTTTGTCTGTCGTAGAGTGGATTACTATTTTAAAGCACTAAAAAAATGCCT 384
consensus_7879#0 GTGAGTCCATTCTGTCTGTCGTAGAGTGGATAACTATTTTAAAGCACTAAATAA-TACTT 839
**** ****** ******************* ******************* ** * * *
consensus_7879#1 TTTCCGCACAATAATCATGAAATTTACAACAAAATCTACGAAACAGCGGACGCGTGGGCG 690
consensus_7879#2 TTTACGCACAATAATCATGAAATTTACAACA----------------------------- 415
consensus_7879#0 TTTCTCCACAATAATCATGAAATTTACAACAAAATCTACGAAACAGTCCGC-CTCCAGCA 898
*** *************************
consensus_7879#1 G------------------ 691
consensus_7879#2 -------------------
consensus_7879#0 ACTAACACACAGTAAACGG 917
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||