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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7880#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1620 fasta sequence
[CCGATTCCAATTAGTGCTGCCGTACTCTCGACAACCCTGGAACGAACTCTATTCCCCTTTGCAGGAAAGCCATGAGTATTGTATCAGTTTGTTCATATTAGTAATACTTACCCAACACGGCAAAGTTAAAGTCCTTCAAAGCAAAACTGGTTCGCAGTAGTTTGCAAATAATCTCGCTCTAAGGGAGGGTTTGGTACAAGCAGTGTGCAGTGAGCGTACCGAACGAACCCC-AAAAAAGACAATATGAATCAATCTATTTTTAACGATATTTTTCTTTATCCGCTCGTTTATTGTGTGCACTATTTTTGGCGCGAATTTTTGAATCCAAAAACAATAGCGCTACCAGTGTATGTGTGAATTTACTTAAGGAGCCACATTTAGTGCTTAGAAAAGAAAGTCAAGAAAGAAGTTTTACTCGCTCTTGCGCATAAGGTTTGCTTTGGAAGATTTTGACTTAATTCGTTTTGAAATTTCGGGAATGTTTAAGTGTTAGAAAAATAGTGAAGAGGAGACTAATCGGAGTCGTAAAGTCGTAAATAATATTTAAATTGTATCTTTTATACGCAACTCTTAATCGAAAACGGAGGCCAGATGTGTAGTAGAATCGCCCAACAGATCATATGCANGGTTACAGTACAGTGCGGCATTTGACTAGTAAATGTCGAGTGAATGTAGATCGACATTCAATTTTAACATGTGTACGATAGTGGTTAGCGTCTCGTGGTTGAATGCCGCGGCGTGTATCGCAGCAAACTAACGTTTTAAAGCAACACGCTTGGCTGCAAGCGGAACGTAGTCTTTGTAAGTAACTAAGGAAGGCCTCGTTCTAGTTTATCACACCATTTGTTGATATCATGTAGCGCCGGGCAGTATAAATAAGCAAACGTTTGGCTAAGTAAAAAAGCAAGCAACAACGAATTCAGTCTCGAGTTGATTTAGGTTCATTTTGTGTCGAATTTGCTTAAATTTATTCACTTTATTGCAC---A-CCAAACGATTATTGAGCCCAGTAGCAAAACCACCGAAAAAAATACAATCTCCTGTTGCGCATCCTCGACGGACTTTTGGTAGCTTTTTTGTTGAAGTAATGCTACGAGGTTGTCCTACATTTTGGCAGACAATATAATAGCATGATTGAGCTTTTCCCGATCGCAACAGAATGGCGACGTTAGCAAGTTTAAATTCATAGTCAATTGTTTATGTTACTTGTTAGTAAAGCGAATTACGCGAGTGGCTTGGCACGTAACCGGGAAAGATATGCTGAATTTGCAAGCAAACGGTATTTCATTGGACATACCATTAACTATCAATTTTTTAAAATAAATCTCTCACTTGTGCTTCCCTCCTTGTCATAATTGAAATGATACTTTTTTACATATTTATTTATTATTACTGATTAATAGTAGGTGCGAATCGACTTCATACAGCAGTAGTGTAAAGTGTGAGGGATACGTGTTTTCGTTCTTTTGCGTATGTTTTTGTTGTTGTGCATCATTAACAGTAATAAAGCGTAGAAAGAGTTTGCTTTTATATCGATGTCGTCGTGAGGTTTTAGTATCGGAATGAAATAGAAAGTTTAACTGAGATGTAAATAAAACTACCAGTACTGTATCGCGGCCAATC]
[+] EMBL BM605460 [CCGATTCCAATTAGTGCTGCCGTACTCTCGACAACCCTGGAACGAACTCTATTCCCCTTTGCAGGAAAGCCATGAGTATTGTATCAGTTTGTTCATATTAGTAATACTTACCCAACACGGCAAAGTTAAAGTCCTTCAAAGCAAAACTGGTTCGCAGTAGTTTGCAAATAATCTCGCTCTAAGGGAGGGTTTGGTACAAGCAGTGTGCAGTGAGCGTACCGAACGAACCCC AAAAAAGACAATATGAATCAATCTATTTTTAACGATATTTTTCTTTATCCGCTCGTTTATTGTGTGCACTATTTTTGGCGCGAATTTTTGAATCCAAAAACAATAGCGCTACCAGTGTATGTGTGAATTTACTTAAGGAGCCACATTTAGTGCTTAGAAAAGAAAGTCAAGAAAGAAGTTTTACTCGCTCTTGCGCATAAGGTTTGCTTTGGAAGATTTTGACTTAATTCGTTTTGAAATTTCGGGAATGTTTAAGTGTTAGAAAAATAGTGAAGAGGAGACTAATCGGAGTCGTAAAGTCGTAAATAATATTTAAATTGTATCTTTTATACGCAACTCTTAATCGAAAACGGAGGCCAGATGTGTAGTAGAATCGCCCAACAGATCATATGC ]
[+] EMBL BX620915 [ TTCCAATTAGTGCTGCCGTACTCTCGACAACCCTGGAACGAACTCTATTCCCCTTTGCAGGAAAGCCATGAGTATTGTATCAGTTTGTTCATATTAGTAATACTTACCCAACACGGCAAAGTTAAAGTCCTTCAAAGCAAAACTGGTTCGCAGTAGTTTGCAAATAATCTCGCTCTAAGGGAGGGTTTGGTACAAGCAGTGTGCAGTGAGCGTACCGAACGAACCCCAAAAAAAGACAATATGAATCAATCTATTTTTAACGATATTTTTCTTTATCCGCTCGTTTATTGTGTGCACTATTTTTGGCGCGAATTTTTGAATCCAAAAACAATAGCGCTACCAGTGTATGTGTGAATTTACTTAAGGAGCCACATTTAGTGCTTAGAAAAGAAAGTCAAGAAAGAAGTTTTACTCGCTCTTGCGCATAAGGTTTGCTTTGGAAGATTTTGACTTAATTCGTTTTGAAATTTCGGGAATGTTTAAGTGTTAGAAAAATAGTGAAGAGGAGACTAATCGGAGTCGTAAAGTCGTAAATAATATTTAAATTGTATCTTTTATACGCAACTCTTAATCGAAAACNGAGGCCAGATGTGTAGTAGAATCGCCCAACAGATCATATGCANGGTTACAGTACAGTGCGGCATTTGACTAG ]
[+] EMBL BX613015 [ ACTAATCGGAGTCGTAAAGTCGTAAATAATATTTAAATTGTATCTTTTATACGCAACTCTTAATCGAAAACGGGGGCCAGATGTGTAGTAGAATCGCCCAACAGATCATATGCAGGTTTACAGTACAGTGCGGCATTTGACTAGTAAATGTCGAGTGAATGTAGATCGACATTCAATTTTAACATGTGTACGATAGTGGTTAGCGTCTCGTGGTTGAATGCCGCGGCGTGTATCGCAGCAAACTAACGTTTTAAAGCAACACGCTTGGCTGCAAGCGGAACGTAGTCTTTGTAAGTAACTAAGGAAGGCCTCGTTCTAGTTTATCACACCATTTGTTGATATCATGTAGCGCCGGGCAGTATAAATAAGCAAACGTTTGGCTAAGTAAAAAAGCAAGCAACAACGAATTCAGTCTCGAGTTGATTTAGGTTCATTTTGTGTCGAATTTGCTTAAATTTATTCACTTTATTGCAC A CCAAACGATTATTGAGCCCAGTAGCAAAACCACCGAAAAAAATACAATCTCCTGTTGCGCATCCTCGACGGACTTTTGGTAGCTTTTTTGTTGAAGTAATGCTACGAGGTTGTCCTACATTTTGGCAGACAATATAATAGCATGATTGAGCTTTTCCCGATCGCAACAGAATGGCGACGTTAGCAAGTTTAAATTCATAGTCAATTGTTTATGTTACTTGTTAGTAAAGCGAATTACGCGAGTGGCTTGGCACGTAACCGGGAAAGATATGCTGAATTTGCAAGCAAACGGTATTTCATTGGACATACCATTAACTATCAATTTTTTAAAATAAATCTCTCACTTGTGCTTC ]
[+] EMBL BX608382 [ AGCAAGCAACAACGAATTCAGTCTCGAGTTGATTTAGGTTCATTTTGTGTCGAATTTGCTTAAATTTATTCACTTTATTGCAC A CCAAACGATTATTGAGCCCAGTAGCAAAACCACCGAAAAAAATACAATCTCCTGTTGCGCATCCTCGACGGACTTTTGGTAGCTTTTTTGTTGAAGTAATGCTACGAGGTTGTCCTACATTTTGGCAGACAATATAATAGCATGATTGAGCTTTTCCCGATCGCAACAGAATGGCGACGTTAGCAAGTTTAAATTCATAGTCAATTGTTTATGTTACTTGTTAGTAAAGCGAATTACGCGAGTGGCTTGGCACGTAACCGGGAAAGATATGCTGAATTTGCAAGCAAACGGTATTTCATTGGACATACCATTAACTATCAATTTTTTAAAATAAATCTCTCACTTGTGCTTCCCTCCTTGTCATAATTGAAATGATACTTTTTTACATATTTATTTATTATTACTGATTAATAGTAGGTGCGAATCGACTTCATACAGCAGTAGTGTAAAGTGTGAGGGATACGTGTTTTCGTTCTTTTGCGTATGTTTTTGTTGTTGTGCATCATTAACAGTAATAAAGCGTAGAAAGAGTTTGCTTTTATATCGATGTCGTCGTGAGGTTTTAGTATCGGAATGAAATAGAAAGTTTAACTGAGATGTAAATAAAACTACCAGTACTGTATCGCGGCCAATC]
[+] EMBL BX609829 [ GCGAGCAACAACGAATTCAGTCTCGAGTTGATTTAGGTTCATTTTGTGTCGAATTTGCTTAAATTTACTCACTTTATTGCACTTTATGCAAACGATTATTGAGCCTAGTAGCAAAACCACCG AAAAAACAAAATCTCCTGTTGCGCATCCTCGACGGACTTTTGGTAGCTTTTTTGTTGAAGTAATGCTACGAGGTTGTCCTACATTTTGGCAGACAATATAATAGCATGATTGAGCTTTTCCCGATCGCAACAGAATGGCGACGTTAGCAAGTTTAAATTCATAGTCAATTGTTTATGTTACTTGTTAGTAAAGCGAATTACGCGAGTGGCTTGGCACGTAACCGGGAAAGATATGCTGAATTTGCAAGCAAACGGTATTTCATTGGACATACCATTAACTATCAATTTTTTAAAATAAATCTCTCACTTGTGCTTCCCTCCTTGTCATAATTGAAATGATAC TTTTTACATATTTATTTATTATTACTGATTAATAGTAGGTGCGAATCGACTTCATACAGCAGCAGTGTAAAGTGTGAGGGATACGTGTT ]
[+] EMBL BX615987 [ ATGCTACGAGGTTGTCCTACATTTTGGCAGACAATATAATAGCATGATTGAGCTTTTCCCGATCGCAACAGAATGGCGACGTTAGCAAGTTTAAATTCATAGTCAATTGTTTATGTTACTTGTTAGTAAAGCGAATTACGCGAGTGGCTTGGCACGTAACCGGGAAAGATATGCTGAATTTGCAAGCAAACGGTATTTCATTGGACATACCATTAACTATCAATTTTTTAAAATAAATCTCTCACTTGTGCTTCCCTCCTTGTCATAATTGAAATGATACTTTTTTACATATTTATTTATTATTACTGATTAATAGTAGGTGCGAATCGACTTCATACAGCAGTAGTGTAAAGTGTGAGGGATACGTGTTTTCGTTCTTTTGCGTATGTTTTTGTTGTTGTGCATCATTAACAGTAATAAAGCGTAGAAAGAGTTTGCTTTTATATCGATGTCGTCGTGAGGTTTTAGTATCGGAATGAAATAGAAAGTTTAACTGAGATGTAAATAAAACTACCAGTACTGTATCGCGG ]
[+] EMBL BX610408 [ ATGCTACGAGGTTGTCCTACATTTTGGCAGACAATATAATAGCATGATTGAGCTTTTCCCGATCGCAACAGAATGGCGACGTTAGCAAGTTTAAATTCATAGTCAATTGTTTATGTTACTTGTTAGTAAAGCGAATTACGCGAGTGGCTTGGCACGTAACCGGGAAAGATATGCTGAATTTGCAAGCAAACGGTATTTCATTGGACATACCATTAACTATCAATTTTTTAAAATAAATCTCTCACTTGTGCTTCCCTCCTTGTCATAATTGAAATGATACTTTTTTACATATTTATTTATTATTACTGATTAATAGTAGGTGCGAATCGACTTCATACAGCAGTAGTGTAAAGTGTGA ]
consensusID : consensus_7880#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence
[AGAATCCCCGAGGTNTAAAATCGCCCAACAGATCATATGCAGGTTTACAGTACAGTGCGGCATTTGACTAGTAAATGTCGAGTGAATGTAGATCGACATTCAATATTTAACATGTGTACGATAGTGGTTAGCGTCTACGTGGTTGAATGCCGCGGCGTGTATCGCAGCAACACTAACGTTTTAAAGCAACACGCTTGGCTGCAAGCGGAACGTAGTCTTTGTAAGTAACTAAGGAAGGCCTCGCTTTCTAGTTTATCACGCCATAATGTATGATATCATGTAGCGCCGGGCAGTATAAATAAGCANAACGTTTGGCTAAGTAAAAAAGCAAGCAACAACGAAGTTCAGTCTCGAGGTTGATTTAGGTTCATTTTGTGTCGAATTTGCTTAAATTTATATCACTTTACTTGCAGCTTATATGCAAACGAGTTATTGAGCCTAGGTAGGCAAAACCACCGAAACAAACAAAATCTCCTGTTGCGCATCCTCGACGGACTTNTTGGTAGCTTTTGTTGAAGTAATGCTACGAGGTTGTCCTACATTTTGGCAGACAATATATAGCATGATTGAGCTATTTC]
[+] EMBL AL933192 [AGAATCCCCGAGGTNTAAAATCGCCCAACAGATCATATGCAGGTTTACAGTACAGTGCGGCATTTGACTAGTAAATGTCGAGTGAATGTAGATCGACATTCAATATTTAACATGTGTACGATAGTGGTTAGCGTCTACGTGGTTGAATGCCGCGGCGTGTATCGCAGCAACACTAACGTTTTAAAGCAACACGCTTGGCTGCAAGCGGAACGTAGTCTTTGTAAGTAACTAAGGAAGGCCTCGCTTTCTAGTTTATCACGCCATAATGTATGATATCATGTAGCGCCGGGCAGTATAAATAAGCANAACGTTTGGCTAAGTAAAAAAGCAAGCAACAACGAAGTTCAGTCTCGAGGTTGATTTAGGTTCATTTTGTGTCGAATTTGCTTAAATTTATATCACTTTACTTGCAGCTTATATGCAAACGAGTTATTGAGCCTAGGTAGGCAAAACCACCGAAACAAACAAAATCTCCTGTTGCGCATCCTCGACGGACTTNTTGGTAGCTTTTGTTGAAGTAATGCTACGAGGTTGTCCTACATTTTGGCAGACAATATATAGCATGATTGAGCTATTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7880#0 CCGATTCCAATTAGTGCTGCCGTACTCTCGACAACCCTGGAACGAACTCTATTCCCCTTT 60
consensus_7880#1 ------------------------------------------------------------
consensus_7880#0 GCAGGAAAGCCATGAGTATTGTATCAGTTTGTTCATATTAGTAATACTTACCCAACACGG 120
consensus_7880#1 ------------------------------------------------------------
consensus_7880#0 CAAAGTTAAAGTCCTTCAAAGCAAAACTGGTTCGCAGTAGTTTGCAAATAATCTCGCTCT 180
consensus_7880#1 ------------------------------------------------------------
consensus_7880#0 AAGGGAGGGTTTGGTACAAGCAGTGTGCAGTGAGCGTACCGAACGAACCCCAAAAAAGAC 240
consensus_7880#1 ------------------------------------------------------------
consensus_7880#0 AATATGAATCAATCTATTTTTAACGATATTTTTCTTTATCCGCTCGTTTATTGTGTGCAC 300
consensus_7880#1 ------------------------------------------------------------
consensus_7880#0 TATTTTTGGCGCGAATTTTTGAATCCAAAAACAATAGCGCTACCAGTGTATGTGTGAATT 360
consensus_7880#1 ------------------------------------------------------------
consensus_7880#0 TACTTAAGGAGCCACATTTAGTGCTTAGAAAAGAAAGTCAAGAAAGAAGTTTTACTCGCT 420
consensus_7880#1 ------------------------------------------------------------
consensus_7880#0 CTTGCGCATAAGGTTTGCTTTGGAAGATTTTGACTTAATTCGTTTTGAAATTTCGGGAAT 480
consensus_7880#1 ------------------------------------------------------------
consensus_7880#0 GTTTAAGTGTTAGAAAAATAGTGAAGAGGAGACTAATCGGAGTCGTAAAGTCGTAAATAA 540
consensus_7880#1 ------------------------------------------------------------
consensus_7880#0 TATTTAAATTGTATCTTTTATACGCAACTCTTAATCGAAAACGGAGGCCAGATGTGTAGT 600
consensus_7880#1 -----------------------------------------AGAATCCCCGAGGTNT--- 16
* * ** ** ** *
consensus_7880#0 AGAATCGCCCAACAGATCATATGCANGGTTACAGTACAGTGCGGCATTTGACTAGTAAAT 660
consensus_7880#1 AAAATCGCCCAACAGATCATATGCAGGTTTACAGTACAGTGCGGCATTTGACTAGTAAAT 76
* *********************** * ********************************
consensus_7880#0 GTCGAGTGAATGTAGATCGACATTCAAT-TTTAACATGTGTACGATAGTGGTTAGCGTCT 719
consensus_7880#1 GTCGAGTGAATGTAGATCGACATTCAATATTTAACATGTGTACGATAGTGGTTAGCGTCT 136
**************************** *******************************
consensus_7880#0 -CGTGGTTGAATGCCGCGGCGTGTATCGCAGCAA-ACTAACGTTTTAAAGCAACACGCTT 777
consensus_7880#1 ACGTGGTTGAATGCCGCGGCGTGTATCGCAGCAACACTAACGTTTTAAAGCAACACGCTT 196
********************************* *************************
consensus_7880#0 GGCTGCAAGCGGAACGTAGTCTTTGTAAGTAACTAAGGAAGGCCTCG--TTCTAGTTTAT 835
consensus_7880#1 GGCTGCAAGCGGAACGTAGTCTTTGTAAGTAACTAAGGAAGGCCTCGCTTTCTAGTTTAT 256
*********************************************** ***********
consensus_7880#0 CACACCATT-TGT-TGATATCATGTAGCGCCGGGCAGTATAAATAAGCAAA-CGTTTGGC 892
consensus_7880#1 CACGCCATAATGTATGATATCATGTAGCGCCGGGCAGTATAAATAAGCANAACGTTTGGC 316
*** **** *** *********************************** * ********
consensus_7880#0 TAAGTAAAAAAGCAAGCAACAACGAA-TTCAGTCTCGAG-TTGATTTAGGTTCATTTTGT 950
consensus_7880#1 TAAGTAAAAAAGCAAGCAACAACGAAGTTCAGTCTCGAGGTTGATTTAGGTTCATTTTGT 376
************************** ************ ********************
consensus_7880#0 GTCGAATTTGCTTAAATTTAT-TCACTTTA-TTGCACAC------CAAACGA-TTATTGA 1001
consensus_7880#1 GTCGAATTTGCTTAAATTTATATCACTTTACTTGCAGCTTATATGCAAACGAGTTATTGA 436
********************* ******** ***** ******* *******
consensus_7880#0 GCCCAGT--AGCAAAACCACCGAAAAAAATACAATCTCCTGTTGCGCATCCTCGACGGAC 1059
consensus_7880#1 GCCTAGGTAGGCAAAACCACCGAAACAAACAAAATCTCCTGTTGCGCATCCTCGACGGAC 496
*** ** *************** *** * ****************************
consensus_7880#0 TTTT-GGTAGCTTTTTTGTTGAAGTAATGCTACGAGGTTGTCCTACATTTTGGCAGACAA 1118
consensus_7880#1 TTNTTGGTAGCTTT--TGTTGAAGTAATGCTACGAGGTTGTCCTACATTTTGGCAGACAA 554
** * ********* ********************************************
consensus_7880#0 TATAATAGCATGATTGAGCTTTTCCCGATCGCAACAGAATGGCGACGTTAGCAAGTTTAA 1178
consensus_7880#1 TATA-TAGCATGATTGAGCTATTTC----------------------------------- 578
**** *************** ** *
consensus_7880#0 ATTCATAGTCAATTGTTTATGTTACTTGTTAGTAAAGCGAATTACGCGAGTGGCTTGGCA 1238
consensus_7880#1 ------------------------------------------------------------
consensus_7880#0 CGTAACCGGGAAAGATATGCTGAATTTGCAAGCAAACGGTATTTCATTGGACATACCATT 1298
consensus_7880#1 ------------------------------------------------------------
consensus_7880#0 AACTATCAATTTTTTAAAATAAATCTCTCACTTGTGCTTCCCTCCTTGTCATAATTGAAA 1358
consensus_7880#1 ------------------------------------------------------------
consensus_7880#0 TGATACTTTTTTACATATTTATTTATTATTACTGATTAATAGTAGGTGCGAATCGACTTC 1418
consensus_7880#1 ------------------------------------------------------------
consensus_7880#0 ATACAGCAGTAGTGTAAAGTGTGAGGGATACGTGTTTTCGTTCTTTTGCGTATGTTTTTG 1478
consensus_7880#1 ------------------------------------------------------------
consensus_7880#0 TTGTTGTGCATCATTAACAGTAATAAAGCGTAGAAAGAGTTTGCTTTTATATCGATGTCG 1538
consensus_7880#1 ------------------------------------------------------------
consensus_7880#0 TCGTGAGGTTTTAGTATCGGAATGAAATAGAAAGTTTAACTGAGATGTAAATAAAACTAC 1598
consensus_7880#1 ------------------------------------------------------------
consensus_7880#0 CAGTACTGTATCGCGGCCAATC 1620
consensus_7880#1 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||